Publications

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Pedersen, C. S. & Kristensen, T. G. (2009). Optimal Overlay of Ligands with Flexible Bonds Using Differential Evolution. Poster session presented at 17th Annual International Conference on Intelligent Systems for Molecular Bioligy (ISMB) & 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden. http://www.iscb.org/ismbeccb2009/poster_list.php?cat=C

Aagaard, J., Skadhede, S. C., Andersen, M. B., Kølbæk, P., Hastrup, L. H., Foldager, L. & Nielsen, J. A. (2014). Opsøgende Psykoseteams i Region Nordjylland: En monitoreringsundersøgelse med to års opfølgning af de Opsøgende Psykoseteams i Region Nordjylland og en registerbaseret undersøgelse af udviklingen i voksenpsykiatrien i Region Nordjylland. Aalborg Universitetsforlag.

Fredsted, T. & Villesen, P. (2006). Operation "Red aben". Jyllands-Posten.

Fredsted, T. & Villesen, P. (2006). Operation "Red Aben". Jyllands-Posten, 8-8.

Dinér, P., Laursen, A. K. K., Lie, M. A. & Jørgensen, K. A. (2007). On the Origin of the Stereoselectivity in Organocatalysed Reactions with Trimethylsilyl-Protected Diarylprolinol. Chemistry: A European Journal, 14(1), 122-127.

Hartfield, M. (2016). On the origin of asexual species by means of hybridization and drift. Molecular Ecology, 25(14), 3264-3265. https://doi.org/10.1111/mec.13713

Wiuf, C. (2002). On the minimum number of topologies explaining a sample of DNA sequences. Theor Pop Biol, 62, 357-363.

Wiuf, C. (2000). On the genealogy of a sample of neutral rare alleles. Theor Pop Biol, 58(1), 61-75. https://doi.org/10.1006/tpbi.2000.1469

Goldringer, I. & Bataillon, T. (2004). On the distribution of temporal variations in allele frequency: consequences for the estimation of effective population size and the detection of loci undergoing selection. Genetics, 168(1), 563-8. https://doi.org/10.1534/genetics.103.025908

Feldman, M. W., Christiansen, F. & Liberman, U. (1983). On some models of fertility selection. Genetics, 105, 1003-1010.

Davies, J., Simancik, F., Lyngsø, R., Mailund, T. & Hein, J. (2007). On Recombination-Induced Multiple and Simultaneous Coalescent Events. Genetics, 177, 2151-2160.

Østergaard, S., Krogh, M. A., Oliveira, V. H. S. D., Larsen, T., GplusE Consortium & Otten, N. D. (2020). Only few benefits from propylene glycol drench in early lactation for cows identified as physiologically imbalanced based on milk spectra analyses. Journal of Dairy Science, 103(2), 1831-1842. https://doi.org/10.3168/jds.2019-17205

Ehlers, B., Bataillon, T. & Damgaard, C. (2021). Ongoing decline in insect-pollinated plants across Danish grasslands. Biology Letters, 17(11), Article 0210493. https://doi.org/0.1098/rsbl.2021.0493

Coutant, M. P., Malmkvist, J., Kaiser, M., Foldager, L. & Herskin, M. S. (2022). On-farm administration of local anaesthetic and surgical castration of piglets: acute behavioural and physiological consequences. In M. Kjosevski, S. Waiblinger & V. Ilieski (Eds.), Proceedings of the 55th Congress of the ISAE: Animal Behaviour and Beyond (pp. 19-19). https://www.applied-ethology.org/res/ISAE_2022_PROCEEDINGS_e-version.pdf

Jimenez Mena, B., Tataru, P., Brøndum, R. F., Sahana, G., Guldbrandtsen, B. & Bataillon, T. (2016). One size fits all? Direct evidence for the heterogeneity of genetic drift throughout the genome. Biology Letters, 12(7), Article 20160426. https://doi.org/10.1098/rsbl.2016.0426

Hobolth, A., Andersen, L. N. & Mailund, T. (2011). On computing the coalescence time density in an isolation-with-migration model with few samples. Genetics, 187, 1242-1243. https://doi.org/10.1534/genetics.110.124164

Li, J., Gromov, P., Gromova, I., Moreira, J. M., Timmermans-Wielenga, V., Rank, F., Wang, K., Li, S., Li, H., Wiuf, C., Yang, H., Zhang, X., Bolund, L. & Celis, J. E. (2008). Omics-based profiling of carcinoma of the breast and matched regional lymph node metastasis. Proteomics, 8(23-24), 5038-52. https://doi.org/10.1002/pmic.200800303

Lund, H. H., Arendt, J. A., Fredslund, J. & Pagliarini, L. (1999). Ola: What Goes Up, Must Fall Down. In Proceedings of Artificial Life and Robotics 1999 (AROB'99) (pp. I-9 - I-15)

Mailund, T. & Westergaard, M. (2004). Obtaining Memory-Efficient Reachability Graph Representations Using the Sweep-Line Method. In Proceedings of Tools and Algorithms for the Construction and Analysis of Systems (TACAS 2004) (pp. 177-191)

Besenbacher, S., Liu, S., Izarzugaza, J. M. G., Grove, J., Belling, K., Bork-Jensen, J., Huang, S., Als, T. D., Li, S., Yadav, R., Rubio-García, A., Lescai, F., Demontis, D., Rao, J., Ye, W., Mailund, T., Møllegaard Friborg, R., Pedersen, C. N. S., Xu, R. ... Rasmussen, S. (2015). Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios. Nature Communications, 6, Article 5969. https://doi.org/10.1038/ncomms6969

Hansen, M. C., Nederby, L., Roug, A., Villesen, P., Kjeldsen, E., Nyvold, C. G. & Hokland, P. (2015). Novel scripts for improved annotation and selection of variants from whole exome sequencing in cancer research. MethodsX, 2, 145-53. https://doi.org/10.1016/j.mex.2015.03.003

Børsting, C. F., Lashkari, S., Weisbjerg, M. R. & Foldager, L., (2022). Notat vedr. tildeling af fedt til malkekøer i tidlig laktation belyst ved en meta-analyse af resultater fra litteraturen samt gennemgang af andre forhold vedr. fodring af malkekøer med tilskudsfedt, No. 2021-0244527, 11 p., Mar 04, 2022. Rådgivningsnotat fra DCA – National Center for Fødevarer og Jordbrug

Waltoft, B. L. & Hobolth, A. (2018). Non-parametric estimation of population size changes from the site frequency spectrum. Statistical Applications in Genetics and Molecular Biology, 17(3), Article 20170061. https://doi.org/10.1515/sagmb-2017-0061

Jeppesen, L. D., Lildballe, D. L., Hatt, L., Hedegaard, J., Singh, R., Toft, C. L. F., Schelde, P., Pedersen, A. S., Knudsen, M. & Vogel, I. (2023). Noninvasive Prenatal Screening for Cystic Fibrosis Using Circulating Trophoblasts: Detection of the 50 Most Common Disease-Causing Variants. Obstetrical and Gynecological Survey, 78(7), 393-395. https://doi.org/10.1097/01.ogx.0000947140.57660.b6

Dutheil, J. & Boussau, B. (2008). Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs. B M C Evolutionary Biology, 8, 255. https://doi.org/10.1186/1471-2148-8-255

Rasmussen, M. J., Bertl, J., Guo, Q., Nielsen, M. M., Świtnicki, M., Hornshøj, H., Madsen, T., Hobolth, A. & Pedersen, J. S. (2017). Non-coding cancer driver candidates identified with a sample- and position-specific model of the somatic mutation rate. eLife, 6, Article e21778. https://doi.org/10.7554/eLife.21778

Dominguez-Valentin, M., Plazzer, J. P., Sampson, J. R., Engel, C., Aretz, S., Jenkins, M. A., Sunde, L., Bernstein, I., Capella, G., Balaguer, F., Macrae, F., Winship, I. M., Thomas, H., Evans, D. G., Burn, J., Greenblatt, M., de Vos tot Nederveen Cappel, W. H., Sijmons, R. H., Nielsen, M. ... Møller, P. (2021). No difference in penetrance between truncating and missense/aberrant splicing pathogenic variants in mlh1 and msh2: A prospective lynch syndrome database study. Journal of Clinical Medicine, 10(13), Article 2856. https://doi.org/10.3390/jcm10132856

Poulsen, I., Balle, M. & Givard, K. L. (2019). Nociception Coma Scale–Revised: Nurses’ Experience in Clinical Practice. Pain Management Nursing, 20(6), 592-598. https://doi.org/10.1016/j.pmn.2019.02.003

Hedegaard, J., Thorsen, K., Lund, M. K., Hein, A.-M. K., Hamilton-Dutoit, S. J., Vang, S., Nordentoft, I., Birkenkamp-Demtröder, K., Kruhøffer, M., Hager, H., Knudsen, B., Andersen, C. L., Sørensen, K. D., Pedersen, J. S., Orntoft, T. F. & Dyrskjøt, L. (2014). Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffin-embedded samples of human cancer and normal tissue. PLOS ONE, 9(5), e98187. https://doi.org/10.1371/journal.pone.0098187

Lindgren, L. H., Thomsen, T., de Thurah, A., Aadahl, M., Hetland, M. L., Kristensen, S. D. & Esbensen, B. A. (2023). Newly diagnosed with inflammatory arthritis (NISMA)–development of a complex self-management intervention. BMC Health Services Research, 23(1), Article 123. https://doi.org/10.1186/s12913-022-09007-w

Bataillon, T., David, J. L. & Schoen, D. J. (1996). Neutral genetic markers and conservation genetics: simulated germplasm collections. Genetics, 144(1), 409-17.

Buttenschøn, H. N., Foldager, L., Elfving, B., Plougmann, P. H., Uher, R. & Mors, O. (2015). Neurotrophic factors in depression in response to treatment. Journal of Affective Disorders, 183, 287-94.

Buttenschøn, H. N., Foldager, L., Elfving, B., Poulsen, P. H. P., Uher, R. & Mors, O. (2014). Neurotrophic factors in depression in response to treatment.

McKhann, H. I., Camilleri, C., Bérard, A., Bataillon, T., David, J. L., Reboud, X., Le Corre, V., Caloustian, C., Gut, I. G. & Brunel, D. (2004). Nested core collections maximizing genetic diversity in Arabidopsis thaliana. Plant Journal, 38(1), 193-202. https://doi.org/10.1111/j.1365-313X.2004.02034.x

W. Abdallah, M., L. Mortensen, E., Greaves-Lord, K., Larsen, N., Bonefeld-Jørgensen, E. C., Nørgaard-Pedersen, B., M. Hougaard, D. & Grove, J. (2013). Neonatal Levels of Neurotrophic Factors and Risk of Autism Spectrum Disorders. Acta Psychiatrica Scandinavica, 128(1). https://doi.org/10.1111/acps.12020

Abdallah, M., Larsen, N., Mortensen, E. L., Atladóttir, H. Ó., Nørgaard-Pedersen, B., Bonefeld-Jørgensen, E. C., Grove, J. & Hougaard, D. M. (2012). Neonatal levels of cytokines and risk of autism spectrum disorders: An exploratory register-based historic birth cohort study utilizing the Danish Newborn Screening Biobank. Journal of Neuroimmunology, 252, 75-82. https://doi.org/10.1016/j.jneuroim.2012.07.013

W. Abdallah, M., Larsen, N., Grove, J., Bonefeld-Jørgensen, E. C., Nørgaard-Pedersen, B., M. Hougaard , D. & L. Mortensen, E. (2013). Neonatal chemokine levels and risk of autism spectrum disorders: Findings from a Danish historic birth cohort follow-up study. Cytokine, 61(2), 370–376. https://doi.org/10.1016/j.cyto.2012.11.015

Castellano, D., James, J. & Eyre-Walker, A. (2018). Nearly Neutral Evolution across the Drosophila melanogaster Genome. Molecular Biology and Evolution, 35(11), 2685-2694. https://doi.org/10.1093/molbev/msy164

Juul, M., Madsen, T., Guo, Q., Bertl, J., Hobolth, A., Kellis, M. & Pedersen, J. S. (2019). ncdDetect2: Improved models of the site-specific mutation rate in cancer and driver detection with robust significance evaluation. Bioinformatics, 35(2), 189-199. https://doi.org/10.1093/bioinformatics/bty511

Christiansen, F. B. (2016). Naturlig selektion. In K. Finster, T. Wang, F. Borchsenius & F. B. Christiansen (Eds.), Evolutionsbiologiske milepæle (pp. 20-39). Aarhus Universitetsforlag.

Hansen, M. C., Nyvold, C. G., Roug, A. S., Kjeldsen, E., Villesen, P., Nederby, L. & Hokland, P. (2015). Nature and nurture: a case of transcending haematological pre-malignancies in a pair of monozygotic twins adding possible clues on the pathogenesis of B-cell proliferations. British Journal of Haematology, 169(3), 391–400. https://doi.org/10.1111/bjh.13305

Christiansen, F. (1990). Natural selection: Measures and modes. In Population Biology (pp. 27-74). Springer.

Christiansen, F. (1984). Natural selection related to the biotic environment. In S. D. Jayakar & L. Zonta (Eds.), Evolution and the Genetics of Populations (Vol. XXIX, pp. 85–102).

Schumer, M., Xu, C., Powell, D. L., Durvasula, A., Skov, L., Holland, C., Blazier, J. C., Sankararaman, S., Andolfatto, P., Rosenthal, G. G. & Przeworski, M. (2018). Natural selection interacts with recombination to shape the evolution of hybrid genomes. Science, 360(6389), 656-660. https://doi.org/10.1126/science.aar3684

Athanasiadis, G., Cheng, J. Y., Vilhjálmsson, B. J., Jørgensen, F. G., Als, T. D., Le Hellard, S., Espeseth, T., Sullivan, P. F., Hultman, C. M., Kjærgaard, P. C., Schierup, M. H. & Mailund, T. (2016). Nationwide Genomic Study in Denmark Reveals Remarkable Population Homogeneity. Genetics, 204(2), 711-722. https://doi.org/10.1534/genetics.116.189241

Sonntag, Y., Musgaard, M., Olesen, C., Schiøtt, B., Møller, J. V., Nissen, P. & Thøgersen, L. (2011). Mutual adaptation of a membrane protein and its lipid bilayer during conformational changes. Nature Communications, 2, 304. https://doi.org/10.1038/ncomms1307

Rafnar, T., Gudbjartsson, D. F., Sulem, P., Jonasdottir, A., Sigurdsson, A., Jonasdottir, A., Besenbacher, S., Lundin, P., Stacey, S. N., Gudmundsson, J., Magnusson, O. T., le Roux, L., Orlygsdottir, G., Helgadottir, H. T., Johannsdottir, H., Gylfason, A., Tryggvadottir, L., Jonasson, J. G., de Juan, A. ... Stefansson, K. (2011). Mutations in BRIP1 confer high risk of ovarian cancer. Nature Genetics, 43(11), 1104-7. https://doi.org/10.1038/ng.955

Nordentoft, I. K., Lamy, P., Birkenkamp-Demtröder, K., Shumansky, K., Vang, S., Hornshøj, H., Juul, M., Villesen, P., Hedegaard, J., Roth, A., Thorsen, K., Høyer, S., Borre, M., Reinert, T., Fristrup, N., Dyrskjøt, L., Shah, S., Pedersen, J. S. & Ørntoft, T. F. (2014). Mutational context and diverse clonal development in early and late bladder cancer: Genomic changes in bladder cancer. Cell Reports, 7(5), 1649–1663. https://doi.org/10.1016/j.celrep.2014.04.038

Julienne, H., Laville, V., McCaw, Z. R., He, Z., Guillemot, V., Lasry, C., Ziyatdinov, A., Nerin, C., Vaysse, A., Lechat, P., Ménager, H., Le Goff, W., Dube, M.-P., Kraft, P., Ionita-Laza, I., Vilhjálmsson, B. J. & Aschard, H. (2021). Multitrait GWAS to connect disease variants and biological mechanisms. PLOS Genetics, 17(8), Article e1009713. https://doi.org/10.1371/journal.pgen.1009713

Albiñana, C., Zhu, Z., Schork, A. J., Ingason, A., Aschard, H., Brikell, I., Bulik, C. M., Petersen, L. V., Agerbo, E., Grove, J., Nordentoft, M., Hougaard, D. M., Werge, T., Børglum, A. D., Mortensen, P. B., McGrath, J. J., Neale, B. M., Privé, F. & Vilhjálmsson, B. J. (2023). Multi-PGS enhances polygenic prediction by combining 937 polygenic scores. Nature Communications, 14(1), Article 4702. https://doi.org/10.1038/s41467-023-40330-w

Displaying results 451 to 500 out of 1317

Revised 21.08.2024

Palle Villesen