Publications

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Lassen, J. K., Wang, T., Nielsen, K. L., Hasselstrøm, J. B., Johannsen, M. & Villesen, P. (2023). Large-Scale metabolomics: Predicting biological age using 10,133 routine untargeted LC–MS measurements. Aging Cell, 22(5), Article e13813. https://doi.org/10.1111/acel.13813

Pedersen, B. P., Ifrim, G., Liboriussen, P., Axelsen, K. B., Palmgren, M. G., Nissen, P., Wiuf, C. H. & Pedersen, C. N. S. (2014). Large Scale Identification and Categorization of Protein Sequences Using Structured Logistic Regression. P L o S One, 9(1), Article e85139. https://doi.org/10.1371/journal.pone.0085139

Satterstrom, F. K., Kosmicki, J. A., Wang, J., Breen, M. S., De Rubeis, S., An, J. Y., Peng, M., Collins, R., Grove, J., Klei, L., Stevens, C., Reichert, J., Mulhern, M. S., Artomov, M., Gerges, S., Sheppard, B., Xu, X., Bhaduri, A., Norman, U. ... Børglum, A. D. (2020). Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism. Cell, 180(3), 568-584.e23. https://doi.org/10.1016/j.cell.2019.12.036

Fonseca, B., Zakaria, C., Jia, J. J., Graber, T. E., Svitkin, Y., Tahmasebi, S., Healy, D., Hoang, HD., Jensen, J. M., Diao, I. T., Lussier, A., Dajadian, C., Padmanabhan , N., Wang, W., Matta-Camacho, E., Hearnden, J., Smith, EM., Tsukumo , Y., Yanagiya, A. ... Damgaard, C. K. (2015). La-related protein 1 (LARP1) represses terminal oligopyrimidine (TOP) mRNA translation downstream of mTOR complex 1 (mTORC1). Journal of Biological Chemistry, 290, 15996-16020. https://doi.org/10.1074/jbc.M114.621730

Wiuf, C., Pallesen, J., Foldager, L. & Grove, J. (2016). LandScape: a simple method to aggregate p--Values and other stochastic variables without a priori grouping. Statistical Applications in Genetics and Molecular Biology, 15(4), 349-361. https://doi.org/10.1515/sagmb-2015-0085

Dahl-Pedersen, K., Foldager, L., Herskin, M. S., Houe, H. & Thomsen, P. T. (2018). Lameness scoring and assessment of fitness for transport in dairy cows: Agreement among and between farmers, veterinarians and livestock drivers. Research in Veterinary Science, 119, 162-166. https://doi.org/10.1016/j.rvsc.2018.06.017

Devantier, T. A., Nørgaard, B. L., Sand, N. P., Mols, R. E., Foldager, L., Diederichsen, A. C. P., Thomsen, K. K., Jensen, J. M. & Videbech, P. (2013). Lack of Correlation Between Depression and Coronary Artery Calcification in a Non-Selected Danish Population. Psychosomatics, 54(5), 458-65. https://doi.org/10.1016/j.psym.2013.01.005

Bache, C., Christiansen, F., Harder, P., Rørdam, M., Smith, N. & Sneppen, K. (2011). Kvalitet i universitetsuddannelserne - forskningsbaseret undervisning: Forskningspolitisk årsmøde 2011. Det Kongelige Danske Videnskabernes Selskab.

Herskin, M. S., Kobek-Kjeldager, C., Kaiser, M. Ø., Thodberg, K., Jensen, L. D., Chen, G., Zhang, G., Rong, L. & Foldager, L., (2022). Krav til indvendig højde ved transport af smågrise, No. 2020-0096886, 15 p., Jul 05, 2022.

Kongsted, H., Foldager, L. & Sørensen, J. T. (2020). Kødkontrollen fanger ikke forekomst af halebid på hele haler. Dansk Veterinærtidsskrift, 2020(7), 18-19. https://dvt.ddd.dk/bladarkiv/2020/nr-07/koedkontrollen-fanger-ikke-forekomst-af-halebid-paa-hele-haler/

Villesen, P., Gosmer, K. & Lindholst, C. (2011). Kemiske fingeraftryk fælder narkoforbryderne. Aktuel Naturvidenskab, (3).

Tahamtani, F., Herskin, M. S., Foldager, L., Murrell, J., Sandercock, D. & Riber, A. B., (2019). Karakterisering af konventionelle slagtekyllinger med gait score 2 i forhold til mobilitet, adfærd, smerte, morfologi og patologi, No. 2019-760-001056, 7 p., Nov 20, 2019.

Ehlers, B., Holmstrup, M., Schmidt, I. K., Sørensen, J. G. & Bataillon, T. (2018). Joint impact of competition, summer precipitation, and maternal effects on survival and reproduction in the perennial Hieracium umbellatum. Evolutionary Ecology, 32(5), 529-545. https://doi.org/10.1007/s10682-018-9953-4

Hollegaard, M. V., Skogstrand, K., Thorsen, P., Nørgaard-Petersen, B., Hougaard, D. & Grove, J. (2013). Joint analysis of SNPs and proteins identifies regulatory IL18 gene variations decreasing the chance of spastic cerebral palsy. Human Mutation, 34(1).

Leroy, T., Rousselle, M., Tilak, M. K., Caizergues, A. E., Scornavacca, C., Recuerda, M., Fuchs, J., Illera, J. C., De Swardt, D. H., Blanco, G., Thébaud, C., Milá, B. & Nabholz, B. (2021). Island songbirds as windows into evolution in small populations. Current Biology, 31(6), 1303-1310.e4. https://doi.org/10.1016/j.cub.2020.12.040

Fredslund, J. & Cañamero, L. D. (2001). I Show You How I Like You: Emotional Human-Robot Interaction through Facial Expression and Tactile Stimulation. I E E E Transactions on Systems, Man and Cybernetics, Part A: Systems & Humans, 31(5), 454-459.

Wright, M., Smed, M. K., Nelson, J. L., Olsen, J., Hetland, M. L., Zoffmann, V. & Jawaheer, D. (2021). Is gene expression among women with rheumatoid arthritis dysregulated during a postpartum flare? Arthritis Research and Therapy, 23, Article 30. https://doi.org/10.1186/s13075-021-02418-w

Hancl, J. & Leppälä, K. (2016). IRRATIONALITY MEASURES FOR CONTINUED FRACTIONS WITH ASYMPTOTIC CONDITIONS. Kyushu journal of mathematics, 70(2), 205-216. https://doi.org/10.2206/kyushujm.70.205

Nexø, B. A., Nissen, K. K., Hansen, B., Laska, M. J., Villesen, P., Christensen, T., Oturai, A. B., Møller-Larsen, A., Petersen, T. & Pedersen, F. S. (2010). Involvement of the endogenous HERV-F(c)1 retroviral locus on the human X chromosome in the etiology of multiple sclerosis. Journal of NeuroVirology, (S1), 61.

Foldager, L., Liu, Y., Pedersen, H. S., Larsen, K. E., Kristensen, K., Callesen, H. & Sørensen, M. T. (2018). In-vitro fertilization and in-vitro embryo culture in mouse as a reprotoxicity model for xenobiotics: some considerations on how to analyse data and present results. In P. Linde (Ed.), Symposium i anvendt statistik 2018 (pp. 188-199)

De Mita, S., Ronfort, J., McKhann, H. I., Poncet, C., El Malki, R. & Bataillon, T. (2007). Investigation of the demographic and selective forces shaping the nucleotide diversity of genes involved in nod factor signaling in Medicago truncatula. Genetics, 177(4), 2123-33. https://doi.org/10.1534/genetics.107.076943

Dieter, Strutwolf, J. & Thøgersen, L. (2001). Investigation of some starting protocols for BDF (FIRM) in electrochemical digital simulation. Journal of Electroanalytical Chemistry, 512, 119-123.

Nielsen, J., Pedersen, C. S. & Hein, J. (2009). Investigation of a simple heuristic improving the speed of statistical alignments. Poster session presented at 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden.

Speed, D., Hemani, G., Speed, M. S., Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium & Børglum, A. D. (2019). Investigating the causal relationship between neuroticism and depression via Mendelian Randomization. Acta Psychiatrica Scandinavica, 139(4), 395-397. https://doi.org/10.1111/acps.13009

Speed, M. S., Jefsen, O. H., Børglum, A. D., Speed, D. & Østergaard, S. D. (2019). Investigating the association between body fat and depression via Mendelian randomization. Translational Psychiatry, 9(1), Article 184. https://doi.org/10.1038/s41398-019-0516-4

de Groot, S., Mailund, T., Lunter, G. & Hein, J. (2008). Investigating Selection on Viruses: A Statistical Alignment Approach. B M C Bioinformatics, 9(308).

Salavati, M. & GplusE Consortium (2017). Investigating metabolic phenotypes in multiparous dairy cows by component analysis and clustering. In Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science (pp. 404-404). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-859-9

Debost, J.-C., Petersen, L., Grove, J., Khashan, A., Henriksen, T., Mors, O., Hollegaard, M., Hougaard, D., Nyegaard, M., Børglum, A. & Mortensen, P. B. (2015). Investigating interactions between early life stress and two single nucleotide polymorphisms in HSD11B2 on the risk of schizophrenia. Psychoneuroendocrinology, 60, 18-27. https://doi.org/10.1016/j.psyneuen.2015.05.013

Fredsted, T., Wincentz, T. & Villesen, P. (2006). Introgression of mountain hare (Lepus timidus) mitochondrial DNA into wild brown hares (Lepus europaeus) in Denmark. B M C Ecology, 6(17).

Christiansen, F. (1988). Intraspecific competition and evolution: Contributions to Theoretical Ecology. Paper presented at Intraspecific competition and evolution, Julich, Germany.

Christiansen, F. & Loeschcke, V. (1980). Intraspecific competition and evolution. In C. Barigozzi (Ed.), Vito Volterra Symposium on Mathematical Models in Biology (pp. 151-170). Springer.

Miege, C., Ruffio-Chable, V., Schierup, M. H., Cabrillac, D., Dumas, C., Gaude, T. & Cock, J. M. (2001). Intrahaplotype Polymorphism at the Brassica S Locus. Genetics, 159, 811-822.

Thomsen, A. H., Leth, P. M., Hougen, H. P. & Villesen, P. (2023). Intimate partner homicides in Denmark 1992-2016. Forensic Science International: Synergy, 6, Article 100337. https://doi.org/10.1016/j.fsisyn.2023.100337

Pearce, B. D., Grove, J., Bonney, E. A., Bliwise, N., Dudley, D. J., Schendel, D. & Thorsen, P. (2010). Interrelationship of cytokines, hypothalamic-pituitary-adrenal axis hormones, and psychosocial variables in the prediction of preterm birth. Gynecologic and Obstetric Investigation, 70(1), 40-46. https://doi.org/10.1159/000284949

Papini, N. M., Presseller, E., Bulik, C. M., Holde, K., Larsen, J. T., Thornton, L. M., Albiñana, C., Vilhjálmsson, B. J., Mortensen, P. B., Yilmaz, Z. & Petersen, L. V. (2024). Interplay of polygenic liability with birth-related, somatic, and psychosocial factors in anorexia nervosa risk: a nationwide study. Psychological Medicine, 54(9), 2073-2086. https://doi.org/10.1017/S0033291724000175

Brikell, I., Wimberley, T., Albiñana, C., Vilhjálmsson, B. J., Agerbo, E., Børglum, A. D., Demontis, D., Schork, A. J., LaBianca, S., Werge, T., Hougaard, D. M., Nordentoft, M., Mors, O., Mortensen, P. B., Petersen, L. V. & Dalsgaard, S. (2023). Interplay of ADHD Polygenic Liability With Birth-Related, Somatic, and Psychosocial Factors in ADHD: A Nationwide Study. The American Journal of Psychiatry (Spanish Edition), 180(1), 73-88. https://doi.org/10.1176/appi.ajp.21111105

Grove, J., Foldager, L., Demontis, D., Hollegaard, M. V., Pedersen, C. B., Yolken, R. H., Hougaard, D. M., Mors, O., Mortensen, P. B., The Psychiatric Genomics Consortium – Schizophrenia & Børglum, A. (2013). Interaction between polygenic scores for schizophrenia and infection by herpes simples virus 1 and 2. Poster session presented at XXIst World Congress of Psychiatric Genetics, Boston, United States.

Foldager, L., Thorup, V. M., Pastell, M., Frandsen, M., Jensen, B. B. & Krogh, M. A. (2024). IntelliRAS - some results from a project on precision fish farming in recirculation aquaculture systems. In Book of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (pp. 284-284). Article Session 14; Theatre 11 Wageningen Academic Publishers.

Paczkowska, M., Barenboim, J., Sintupisut, N., Fox, N. S., Zhu, H., Abd-Rabbo, D., Mee, M. W., Boutros, P. C., PCAWG Drivers and Functional Interpretation Working Group, Reimand, J. & PCAWG Consortium (2020). Integrative pathway enrichment analysis of multivariate omics data. Nature Communications, 11(1), Article 735. https://doi.org/10.1038/s41467-019-13983-9

Winge, S. B., Soraggi, S., Schierup, M. H., Rajpert-De Meyts, E. & Almstrup, K. (2020). Integration and reanalysis of transcriptomics and methylomics data derived from blood and testis tissue of men with 47,XXY Klinefelter syndrome indicates the primary involvement of Sertoli cells in the testicular pathogenesis. American Journal of Medical Genetics. Part C: Seminars in Medical Genetics, 184(2), 239-255. https://doi.org/10.1002/ajmg.c.31793

GROUP Investigators & iPSYCH-GEMS SCZ (Jakob Grove, member of -) (2014). Integrated Pathway-Based Approach Identifies Association between Genomic Regions at CTCF and CACNB2 and Schizophrenia. P L o S Genetics, 10(6), e1004345. https://doi.org/10.1371/journal.pgen.1004345

Scally, A., Dutheil, J. Y., Hillier, L. W., Jordan, G. E., Goodhead, I., Herrero, J., Hobolth, A., Lappalainen, T., Mailund, T., Marques-Bonet, T., McCarthy, S., Montgomery, S. H., Schwalie, P. C., Tang, Y. A., Ward, M. C., Xue, Y., Yngvadottir, B., Alkan, C., Andersen, L. N. ... Durbin, R. (2012). Insights into hominid evolution from the gorilla genome sequence. Nature, 483(7388), 169-75. https://doi.org/10.1038/nature10842

Lan, T., Leppälä, K., Tomlin, C., Talbot, S. L., Sage, G. K., Farley, S. D., Shideler, R. T., Bachmann, L., Wiig, Ø., Albert, V. A., Salojärvi, J., Mailund, T., Drautz-Moses, D. I., Schuster, S. C., Herrera-Estrella, L. & Lindqvist, C. (2022). Insights into bear evolution from a Pleistocene polar bear genome. Proceedings of the National Academy of Sciences (PNAS), 119(24), Article e2200016119. https://doi.org/10.1073/pnas.2200016119

Sjödin, P., Bataillon, T. & Schierup, M. H. (2010). Insertion and deletion processes in recent human history. P L o S One, 5(1), e8650. https://doi.org/10.1371/journal.pone.0008650

Mailund , Pedersen, C. N. S., Bardino, J., Vinter, B. & Karlsen, H. H. (2005). Initial experiences with GeneRecon on MiG. In Proceedings of The 2005 International Conference on Grid Computing and Applications (GCA)

Boni, M. F., Gog, J. R., Andreasen, V. & Christiansen, F. B. (2004). Influenza drift and epidemic size: the race between generating and escaping immunity. Theoretical Population Biology, 65, 179-191.

Ravn, P., Forsberg, R. & Christiansen, F. (2007). Influenza: - menneskets uforudsigelige følgesvend. Aktuel Naturvidenskab, 2007(2), 16-20.

Cheng, Z., Little, M. W., Ferris, C., Takeda, H., Ingvartsen, K. L., Crowe, M. A., Wathes, D. C. & GplusE Consortium (2023). Influence of the concentrate inclusion level in a grass silage-based diet on hepatic transcriptomic profiles in Holstein-Friesian dairy cows in early lactation. Journal of Dairy Science, 106(8), 5805-5824. https://doi.org/10.3168/jds.2022-22860

Winters, J. F. M., Foldager, L., Krogh, U., Nørskov, N. & Sørensen, M. T. (2022). Influence of glyphosate residues in sow diets on piglet diarrhoea, kinky tails and stillbirth. In Book of Abstracts of the 73rd Annual Meeting of the European Federation of Animal Science (pp. 284-284). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-937-4

Mailund, T., Munch, K. & Schierup, M. H. (2014). Inferring the Process of Human–Chimpanzee Speciation. In Encyclopedia of Life Sciences Wiley. https://doi.org/10.1002/9780470015902.a0020833.pub2

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Palle Villesen