Publications

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Ehlers, B. K., Grøndahl, E., Ronfort, J. & Bataillon, T. (2012). "Ménage à trois": the presence/absence of thyme shapes the mutualistic interaction between the host plant Medicago truncatula (Fabaceae) and its symbiotic bacterium Sinorhizobium meliloti. Ecology and Evolution, 2(7), 1676-81. https://doi.org/10.1002/ece3.270

Damgaard, C., Pedersen, M. H., Bendsen, N. B., Mikkelsen, D. L., Ehlers, B. & Bataillon, T. (2022). Measuring plant diversity in a two-stage sampling design by Bayesian updated relative abundances. bioRxiv. https://doi.org/10.1101/2022.03.23.485475

Pebesma, E., Mailund, T. & Hiebert, J. (2016). Measurement units in R. The R Journal, 8(2), 486-494.

Foldager, L., Steffensen, R. N., Thiel, S., Als, T. D., Nielsen, H. J., Nordentoft, M., Mortensen, P. B., Mors, O. & Jensenius, J. C. (2012). MBL and MASP-2 concentrations in serum and MBL2 promoter polymorphisms are associated to schizophrenia. Acta Neuropsychiatrica, 24(4), 199-207. https://doi.org/10.1111/j.1601-5215.2011.00618.x

Villesen, P. (2001). Mating System Evolution, Worker Reproduction and Symbiont Diversity in Attine Ants.

Knudsen, M. (2010). Mathematical Models of Protein Interaction Networks and Protein Domain Structures. Det Naturvidenskabelige Fakultet, Aarhus Universitet.

Knudsen, M., Feliu, E. & Wiuf, C. H. (2011). Mathematical Modeling of Phosphorelay Dynamics. Poster session presented at The XII International Congress on Molecular Systems Biology, Lleida, Spain.

Kodesh, A., Levine, S. Z., Khachadourian, V., Rahman, R., Schlessinger, A., O'Reilly, P. F., Grove, J., Schendel, D., Buxbaum, J. D., Croen, L., Reichenberg, A., Sandin, S. & Janecka, M. (2022). Maternal health around pregnancy and autism risk: a diagnosis-wide, population-based study. Psychological Medicine, 52(16), 4076-4084. https://doi.org/10.1017/S0033291721001021

Sengpiel, V., Elind, E., Bacelis, J., Nilsson, S., Grove, J., Myhre, R., Haugen, M., Margrete Meltzer, H., Alexander, J., Jacobsson, B. & Brantsæter, A.-L. (2013). Maternal caffeine intake during pregnancy is associated with birth weight but not with gestational length: results from a large prospective observational cohort study. B M C Medicine, 11(42). https://doi.org/10.1186/1741-7015-11-42

Hobolth, A. & Jensen, J. L. (2014). Markovian approximation to the finite loci coalescent with recombination along multiple sequences. Theoretical Population Biology, 98, 48-58. https://doi.org/10.1016/j.tpb.2014.01.002

Asmussen, S. & Hobolth, A. (2011). Markov bridges, bisection and variance reduction. Thiele Centre, Institut for Matematiske Fag, Aarhus Universitet.

Asmussen, S. & Hobolth, A. (2012). Markov bridges, bisection and variance reduction. In L. Plaskota & H. Wozniakowski (Eds.), Monte Carlo and Quasi-Monte Carlo Methods 2010 (pp. 3-22). Springer. https://doi.org/10.1007/978-3-642-27440-4_1

Gregersen, N., Buttenschøn, H. N., Atli Dahl, H., Foldager, L., Kristensen, A. S., Woldby, D., Koefoed, P., Wang, AG., Joensen, S., Kruse, TA., Børglum, A. & Mors, O. (2010). Markers on chromosome 19p13 associated with panic disorder. XVIIIth World Congress on Psychiatric Genetics. Book of abstracts., 288-289.

Gregersen, N., Buttenschøn, H. N., Dahl, HA., Foldager, L., Kristensen, A. S., Woldbye, D. P. D., Kofoed, P., Joensen, S., Kruse, T. A., Wang, A. G., Børglum, A. & Mors, O. (2011). Markers on chromosome 19p13 are associated with panic disorder. Poster session presented at PhD Day 2011, Aarhus University, Faculty of Health Sciences, Aarhus, Denmark.

Salvador-Martínez, I., Coronado-Zamora, M., Castellano, D., Barbadilla, A. & Salazar-Ciudad, I. (2018). Mapping selection within Drosophila melanogaster embryo's anatomy. Molecular Biology and Evolution, 35(1), 66-79. https://doi.org/10.1093/molbev/msx266

Nielsen, S. B., Lyhne, N. M., Andersen, M., Plaschke, C. C., Gothelf, A. B., Johansen, J., Maare, C., Farhadi, M., Godballe, C., Primdahl, H., Holm, A. I. S., Alsner, J., Kjærgaard, T. & Overgaard, J. (2025). Management of head and neck cancer of unknown primary: A phase IV study by DAHANCA. European Journal of Cancer, 216, Article 115211. https://doi.org/10.1016/j.ejca.2024.115211

Moeskjær, S., Skovbjerg, C. K., Tausen, M., Wind, R., Roulund, N., Janss, L. & Andersen, S. U. (2022). Major effect loci for plant size before onset of nitrogen fixation allow accurate prediction of yield in white clover. Theoretical and Applied Genetics, 135(1), 125-143. https://doi.org/10.1007/s00122-021-03955-3

Nyborg, J., Nissen, P., Kjeldgaard, M., Thirup, S., Polekhina, G., Clark, B. F. & Reshetnikova, L. (1997). Macromolecular mimicry in protein biosynthesis. Structure, 2(3), S7-11.

Søndergaard, D., Knudsen, M. & Pedersen, C. N. S. (2014). Machine learning approaches to functional prediction of P-Type ATPases.

Kilburn, T. R., Eriksen, H.-L. F., Underbjerg, M., Thorsen, P., Mortensen, E. L., Landrø, N. I., Bakketeig, L. S., Grove, J., Sværke, C. & Kesmodel, U. S. (2015). Low to Moderate Average Alcohol Consumption and Binge Drinking in Early Pregnancy: Effects on Choice Reaction Time and Information Processing Time in Five-Year-Old Children. PLOS ONE, 10(9), e0138611. https://doi.org/10.1371/journal.pone.0138611

Buchholtz, P. E., Ashkanian, M., Hjerrild, S., Hauptmann, L. K., Devantier, T. A., Jensen, P., Wissing, S., Thorgaard, M., Bjerager, L., Saugberg, J. L., Alrø, A., Speed, M., Brund, R. B. K. & Videbech, P. (2020). Low frequency rTMS inhibits the anti-depressive effect of ECT: A pilot study. Acta Neuropsychiatrica, 32(6), 328-338. https://doi.org/10.1017/neu.2020.28

Thomsen, P. T., Foldager, L., Raundal, P. & Capion, N. (2019). Lower odds of sole ulcers in the following lactation in dairy cows that received hoof trimming around drying off. Veterinary Journal, 254, Article 105408. https://doi.org/10.1016/j.tvjl.2019.105408

Madsen, L. H., Fukai, E., Radutoiu, E. S., Yost, C. K., Sandal, N. N., Schauser, L. & Stougaard, J. (2005). LORE1, an active low-copy-number TY3-gypsy retrotransposon family in the model legume Lotus japonicus. Plant. J., 44, 372-381.

Omland, L. H., Holm-Hansen, C., Lebech, A. M., Dessau, R. B., Bodilsen, J., Andersen, N. S., Roed, C., Christiansen, C. B., Ellermann-Eriksen, S., Midgley, S., Nielsen, L., Benfield, T., Hansen, A. B. E., Andersen, C., Rothman, K. J., Sørensen, H. T., Fischer, T. K. & Obel, N. (2020). Long-Term Survival, Health, Social Functioning, and Education in Patients With an Enterovirus Central Nervous System Infection, Denmark, 1997-2016. The Journal of Infectious Diseases, 222(4), 619-627. https://doi.org/10.1093/infdis/jiaa151

Castagnini, A., Foldager, L. & Bertelsen, A. (2013). Long-term stability of acute and transient psychotic disorders. The Australian & New Zealand Journal of Psychiatry, 47(1), 59-64. https://doi.org/10.1177/0004867412461692

Poulsen, N. A., Nielsen, E. E., Schierup, M. H., Loeschcke, V. & Grønkjær, P. (2006). Long-term stability and effective population size in North Sea and Baltic Sea cod (Gadus morhua). Molecular Ecology, 15, 321-331.

Willerslev, E., Hansen, A., Rønn, R., Brand, T. B., Barnes, I., Wiuf, C., Gilichinsky, D., Mitchell, D. & Cooper, A. (2004). Long-term persistence of bacterial DNA. Curr. Biol., 14, 9-10.

Bjerg, J. T., Boschker, H. T. S., Larsen, S., Berry, D., Schmid, M., Millo, D., Tataru, P., Meysman, F. J. R., Wagner, M., Nielsen, L. P. & Schramm, A. (2018). Long-distance electron transport in individual, living cable bacteria. Proceedings of the National Academy of Sciences (PNAS), 115(22), 5786-5791. https://doi.org/10.1073/pnas.1800367115

Mortensen, L. M., Lundbye-Christensen, S., Schmidt, E. B., Calder, P. C., Schierup, M. H., Tjønneland, A., Parner, E. T. & Overvad, K. (2017). Long-chain n-3 and n-6 polyunsaturated fatty acids and risk of atrial fibrillation: Results from a Danish cohort study. P L o S One, 12(12), e0190262. Article e0190262. https://doi.org/10.1371/journal.pone.0190262

Andersen, L. N. & Asmussen, S. (2011). Local time asymptotics for centered Lévy processes with two-sided reflection. Stochastic Models, 27(2), 202-219. https://doi.org/10.1080/15326349.2011.567928

Besenbacher, S., Mailund, T. & Schierup, M. H. (2008). Local Phylogeny Mapping of Quantitative Traits: Higher Accuracy and Better Ranking Than Single Marker Association in Genomewide Scans. Genetics. https://doi.org/10.1534/genetics.108.092643

Besenbacher, S., Mailund, T. & Schierup, M. H. (2009). Local phylogeny mapping of quantitative traits: Higher accuracy and better ranking than single marker association in genomewide scans. Genetics, 181, 747-753.

Sahana, G., Mailund, T., Lund, M. S. & Guldbrandtsen, B. (2011). Local Genealogies in a Linear Mixed Model for Genome-wide Association Mapping in Complex Pedigreed Populations. P L o S One, 6(11).

Birkenkamp-Demtröder, K., Christensen, E., Nordentoft, I. K., Knudsen, M., Taber, A., Høyer, S., Lamy, P., Agerbæk, M., Jensen, J. B. & Dyrskjøt, L. (2017). Liquid Biopsies for monitoring treatment response and metastatic relapse in bladder cancer patients. Poster session presented at 1st Annual Research Meeting at the Department of Clinical Medicine, Aarhus, Denmark.

Hansen, S. K., Vestergaard, M., Thøgersen, L., Schiøtt, B., Nielsen, N. C. & Vosegaard, T. (2014). Lipid Dynamics Studied by Calculation of 31P Solid-State NMR Spectra Using Ensembles from Molecular Dynamics Simulations. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 118(19), 5119-5129. https://doi.org/10.1021/jp5000304

Christiansen, F. (1989). Linkage equilibrium in multi-locus genotypic frequencies with mixed selfing and random mating. Theoretical Population Biology, 35, 307-336.

Coriani, S., Høst, S., Jansik, B., Thøgersen, L., Olsen, J., Jørgensen, P., Reine, S., Pawlowski, F., Helgaker, T. & Salek, P. (2007). Linear-scaling implementation of molecular response theory in self-consistent field electronic-structure theory. Journal of Chemical Physics, 126(15), 154108-1 - 154108-11.

Salek, P., Høst, S., Thøgersen, L., Jørgensen, P., Manninen, P., Olsen, J., Jansik, B., Reine, S., Pawlowski, F., Tellgren, E., Helgaker, T. & Coriani, S. (2007). Linear-scaling implementation of molecular electronic self-consistent field theory. Journal of Chemical Physics, 126, 114110-1 - 114110-16.

Brameier, M. & Banzhaf, W. (2007). Linear Genetic Programming. Springer.

Mailund, T., Munch, K. & Schierup, M. H. (2014). Lineage sorting in apes. Annual Review of Genetics, 48, 519-535. https://doi.org/10.1146/annurev-genet-120213-092532

Hartfield, M. & Glemin, S. (2016). Limits to Adaptation in Partially Selfing Species. Genetics, 203(2), 959-+. https://doi.org/10.1534/genetics.116.188821

Albiñana, C., Grove, J., McGrath, J. J., Agerbo, E., Wray, N. R., Bulik, C. M., Nordentoft, M., Hougaard, D. M., Werge, T., Børglum, A. D., Mortensen, P. B., Privé, F. & Vilhjálmsson, B. J. (2021). Leveraging both individual-level genetic data and GWAS summary statistics increases polygenic prediction. American Journal of Human Genetics, 108(6), 1001-1011. https://doi.org/10.1016/j.ajhg.2021.04.014

Hougaard, B. K., Madsen, L. H., Sandal, N., de Carvalho Moretzsohn, M., Fredslund, J., Schauser, L., Nielsen, A. M., Rohde, T., Sato, S., Tabata, S., Bertioli, D. J. & Stougaard, J. (2008). Legume anchor markers link syntenic regions between Phaseolus vulgaris, Lotus japonicus, Medicago truncatula and Arachis. Genetics, 179(4), 2299-312. https://doi.org/10.1534/genetics.108.090084

Christiansen, F. (2008). Leder. Matilde, (34), 2.

Christiansen, F. B. (2004). Lecture Notes in Population Genetics. Eget.

Christiansen, F. B. (2003). Lecture Notes in Population Genetics. Eget.

Christiansen, F. B. (2001). Lecture Notes in Population Genetics. Eget.

Cheng, J. Y. (2016). Learning with Admixture: Modeling, Optimization, and Applications in Population Genetics. http://www.jade-cheng.com/au/tmp/thesis/thesis.pdf

Privé, F., Arbel, J. & Vilhjálmsson, B. J. (2020). LDpred2: better, faster, stronger. Bioinformatics, 36(22-23), 5424-5431. https://doi.org/10.1093/bioinformatics/btaa1029

Kristensen, T. G., Pedersen, C. S., Thomsen, R. & Christensen, M. H. (2009). Largest Common Chemical Feature Subtree as a Virtual Screening Method. Poster session presented at 17th Annual International Conference on Intelligent Systems for Molecular Bioligy (ISMB) & 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden. http://www.iscb.org/ismbeccb2009/poster_list.php?cat=C

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Revised 21.08.2024

Palle Villesen