Publications

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Li, C. H., Prokopec, S. D., Sun, R. X., Yousif, F., Schmitz, N., PCAWG Tumour Subtypes and Clinical Translation, Boutros, P. C. & PCAWG Consortium (2020). Sex differences in oncogenic mutational processes. Nature Communications, 11, Article 4330. https://doi.org/10.1038/s41467-020-17359-2

Blokland, G. A. M., Grove, J., Chen, C. Y., Cotsapas, C., Tobet, S., Handa, R., Schizophrenia Working Group of the Psychiatric Genomics Consortium, Bipolar Disorder Working Group of the Psychiatric Genomics Consortium, Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, Sex Differences Cross-Disorder Analysis Group of the Psychiatric Genomics Consortium & iPSYCH (2022). Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders. Biological Psychiatry, 91(1), 102-117. https://doi.org/10.1016/j.biopsych.2021.02.972

Maretty, L., Jensen, J. M., Petersen, B., Sibbesen, J. A., Liu, S., Villesen, P., Skov, L., Belling, K. C., Theil Have, C., Izarzugaza, J. M. G., Grosjean, M., Bork-Jensen, J., Grove, J., Als, T. D., Huang, S., Chang, Y., Xu, R., Ye, W., Rao, J. ... Schierup, M. H. (2017). Sequencing and de novo assembly of 150 genomes from Denmark as a population reference. Nature, 548(7665), 87-91. https://doi.org/10.1038/nature23264

Poulsgaard, G. A., Sørensen, S. G., Juul, R. I., Nielsen, M. M. & Pedersen, J. S. (2023). Sequence dependencies and mutation rates of localized mutational processes in cancer. Genome Medicine, 15(1), Article 63. https://doi.org/10.1186/s13073-023-01217-z

Christensen, S., Schöller, S., Schierup, M. H., Vestergaard, B. F. & Mordhorst, C. H. (2002). Sequence analysis of measles virus strains collected during the pre- and early-vaccination era in Denmark reveals a considerable diversity of ancient strains. Acta Pathologica Microbiologica et Immunologica Scandinavica, 110, 113-122.

Dam, M., Lynggaard, L. S., Jónsson, Ó. G., Saulyte Trakymiene, S., Palk, K., Jarvis, K., Andrés-Jensen, L., Tuckuviene, R. & Albertsen, B. K. (2024). Sequelae and post-thrombotic syndrome after venous thromboembolism in acute lymphoblastic leukemia survivors treated on the NOPHO ALL2008 protocol. Pediatric Blood & Cancer, 71(6), Article e30937. https://doi.org/10.1002/pbc.30937

Mailund (2000). Separation of style and content with XML in an interchange format for high-level Petri nets. In Proceedings on the XML/SGML based interchange formats for Petri nets (pp. 7-12)

Østergaard, S. D., Dinesen, P. T. & Foldager, L. (2011). Sensitivity x PPV is a recognized test called the clinical utility index (CUI+). The Authors Reply. European Journal of Epidemiology, 26, 252-252. https://doi.org/10.1007/s10654-011-9561-x

Jakobsen, H. J., Brorson, M., Bildsøe, H. K., Skibsted, J. & Hansen, M. R. (2008). Sensitivity Enhancement in Natural-Abundance Solid-State ³³S MAS NMR Spectroscopy Employing Adiabatic Inversion Pulses to the Satellite Transitions. Poster session presented at 49th Experimental NMR Conference (ENC), Asilomar, California, United States.

Jakobsen, H. J., Brorson, M., Bildsøe, H. K., Skibsted, J. & Hansen, M. R. (2008). Sensitivity Enhancement in Natural Abundance Solid-State ³³S MAS NMR Spectroscopy Employing Adiabatic Inversion Pulses to the Satellite Transitions. Abstract from 49^th Experimental NMR Conference, Asilomar, Pacific Grove, California, United States.

Hartfield, M. & Bataillon, T. (2020). Selective Sweeps Under Dominance and Inbreeding. G3 (Bethesda, Md.), 10(3), 1063-1075. https://doi.org/10.1534/g3.119.400919

Munch, K., Nam, K., Schierup, M. H. & Mailund, T. (2016). Selective sweeps across twenty millions years of primate evolution. Molecular Biology and Evolution, 33(12), 3065-3074. https://doi.org/10.1093/molbev/msw199

Kuderna, L. F. K., Lizano, E., Julia, E., Gomez-Garrido, J., Serres-Armero, A., Kuhlwilm, M., Alandes, R. A., Alvarez-Estape, M., Juan, D., Simon, H., Alioto, T., Gut, M., Gut, I., Schierup, M. H., Fornas, O. & Marques-Bonet, T. (2019). Selective single molecule sequencing and assembly of a human Y chromosome of African origin. Nature Communications, 10(1), Article 4. https://doi.org/10.1038/s41467-018-07885-5

Christiansen, F. (1990). Selection in natural populations. In S. Lessard (Ed.), Mathematical and Statistical Developments of Evolutionary Theory (pp. 121-176). Kluwer Academic Publishers.

Christiansen, F. & Feldman, M. W. (1983). Selection in complex genetic systems V. Some properties of mixed selfing and random mating with two loci. Theoretical Population Biology, 23, 257-272.

Paape, T., Bataillon, T., Zhou, P., J Y Kono, T., Briskine, R., Young, N. D. & Tiffin, P. (2013). Selection, genome-wide fitness effects and evolutionary rates in the model legume Medicago truncatula. Molecular Ecology, 22(13), 3525-3538. https://doi.org/10.1111/mec.12329

Siegismund, H. & Christiansen, F. (1985). Selection component analysis of natural polymorphisms using population samples including mother-offspring combinations, III. Theoretical Population Biology, 27, 268–297.

Østergaard, H. & Christiansen, F. (1981). Selection component analysis of natural polymorphisms using population samples including mother-offspring combinations, II. Theoretical Population Biology, 19, 378-419.

Schierup, M. H., Bechsgaard, J. S., Nielsen, L. H. & Christiansen, F. B. (2006). Selection at work in self-incompatible Arabidopsis lyrata: Mating patterns in a natural population. Genetics, 172, 477-484.

Schierup, M. H., Bechsgaard, J. S. & Christiansen, F. B. (2008). Selection at work in self-incompatible Arabidopsis lyrata. II. Spatial distribution of S haplotypes in Iceland. Genetics, 180(2), 1051-9. https://doi.org/10.1534/genetics.108.088799

Christiansen, F. (1985). Selection and population regulation with habitat variation. American Naturalist, 126.

Christiansen, F. (1985). Selection and population regulation with habitat variation. American Naturalist, 126, 418-429.

Hauberg, M. E., Holm-Nielsen, M. H., Mattheisen, M., Askou, A. L., Grove, J., Børglum, A. D. & Corydon, T. J. (2016). Schizophrenia risk variants affecting microRNA function and site-specific regulation of NT5C2 by miR-206. European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology, 26(9), 1522-6. https://doi.org/10.1016/j.euroneuro.2016.06.014

Foldager, L., Steffensen, R. N., Thiel, S., Als, T. D., Kristensen, A. S., Straarup, S., Nielsen, H. J., Nordentoft, M., Mortensen, P. B., Rosenberg, R., Mors, O. & Jensenius, J. C. (2008). Schizophrenia and innate immune defense: association study of mannan-bindinglectin (MBL) and MBL-associated serine proteases-2 (MASP-2) deficiency. In WCPG 2008 Abstract Book (pp. 225)

Sükösd, Z., Andersen, E. S. & Lyngsø, R. (2014). SCFGs in RNA secondary structure prediction: a hands-on approach. Methods in Molecular Biology, 1097, 143-62. https://doi.org/10.1007/978-1-62703-709-9__8, https://doi.org/10.1007/978-1-62703-709-9_8

Møllegaard Friborg, R., Bjørndalen, J. M. & Vinter, B. (2013). Scaling PyCSP. Paper presented at Communicating Process Architectures 2013, Edinburgh, United Kingdom.

Christensen, O. F., Roberts, G. & Rosenthal, J. (2005). Scaling limits for the transient phase of local Metropolis-Hastings algorithms. Journal of the Royal Statistical Society, Series B, 67, 253-268.

Stumpf, MPH. & Wiuf, C. (2005). Sampling properties of random graphs: The degree distribution. Physical Review E, 72(036118), 1-7.

Hobolth, A. & Jeff, T. (2014). Sampling and summary statistics of endpoint-conditioned paths in DNA sequence evolution. In M.-H. Chen, L. Kuo & P. O. Lewis (Eds.), Bayesian Phylogenetics: Methods, Algorithms, and Applications (1 ed., Vol. 1). CRC Press.

Bolvig, A. K., Nørskov, N., van Vliet, S., Foldager, L., Curtasu, M. V., Hedemann, M. S., Sørensen, J. F., Lærke, H. N. & Knudsen, K. E. B. (2017). Rye bran modified with cell wall-degrading enzymes influences the kinetics of plant lignans but not of enterolignans in multicatheterized pigs. Journal of Nutrition, 147(12), 2220-2227 . https://doi.org/10.3945/jn.117.258483

Lamy, P., Wiuf, C., Ørntoft, T. F. & Andersen, C. L. (2010). Rseg - an R package to optimize segmentation of SNP array data. Bioinformatics. https://doi.org/10.1093/bioinformatics/btq668

Zieger, K., Andersen, L. D., Wiuf, C., Jensen, J. L., Andersen, C. L., Jensen, K. M.-E. & Ørntoft, T. F. (2005). Role of activating fibroblast growth factor receptor 3 mutations in the development of bladder tumors. Clinical Cancer Research, 11(21), 7709-7719.

Madsen, T. (2017). Robust statistical methods for significance evaluation and applications in cancer driver detection and biomarker discovery.

Hollegaard, M. V., Grove, J., Grauholm, J., Kreiner-Moller, E., Bonnelykke, K., Nørgaard, M., Benfield, T. L., Norgaard-Pedersen, B., Mortensen, P. B., Mors, O., Sørensen, H. T., Harboe, Z. B., Børglum, A., Demontis, D., Ørntoft, T. F., Bisgaard, H. & Hougaard, D. M. (2011). Robustness of genome-wide scanning using archived dried blood spot samples as a DNA source. B M C Genetics, 12(1), 58. https://doi.org/10.1186/1471-2156-12-58

Christensen, O. F., Roberts, G. & Sköld, M. (2006). Robust Markov chain Monte Carlo methods for spatial generalised linear mixed models. Journal of Computational and Graphical Statistics, 15, 1-17.

Fredslund, J. & Matarić, M. J. (2002). Robots in Formation Using Local Information. In Proceedings of the 7th International Conference on Intelligent Autonomous Systems (IAS-7)

Fredslund, J. & Matarić, M. J. (2001). Robot Formations.

Preker, P., Nielsen, J., Schierup, M. H. & Jensen, T. H. (2009). RNA polymerase plays both sides: Vivid and bidirectional transcription around and upstream of active promoters. Cell Cycle, 8(8), 1106-1107.

Preker, P., Nielsen, J., Kammler, S., Lykke-Andersen, S., Christensen, M. S., Mapendano, C. K., Schierup, M. H. & Jensen, T. H. (2008). RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters. Science, 322(5909), 1851-1854. https://doi.org/10.1126/science.1164096

Demontis, D., Walters, R. K., Rajagopal, V. M., Waldman, I. D., Grove, J., Als, T. D., Dalsgaard, S., Ribasas, M., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Werge, T., Nordentoft, M., Mors, O., Mortensen, P. B., ADHD Working Group of the Psychiatric Genomics Consortium (PGC), Cormand, B., Hougaard, D. M., Neale, B. M., Franke, B. ... Børglum, A. D. (2021). Risk variants and polygenic architecture of disruptive behavior disorders in the context of attention-deficit/hyperactivity disorder. Nature Communications, 12(1), Article 576. https://doi.org/10.1038/s41467-020-20443-2

Agerbo, E., Trabjerg, B. B., Børglum, A. D., Schork, A. J., Vilhjálmsson, B. J., Pedersen, C. B., Hakulinen, C., Albiñana, C., Hougaard, D. M., Grove, J., McGrath, J. J., Bybjerg-Grauholm, J., Mors, O., Plana-Ripoll, O., Werge, T., Wray, N. R., Mortensen, P. B. & Musliner, K. L. (2021). Risk of Early-Onset Depression Associated With Polygenic Liability, Parental Psychiatric History, and Socioeconomic Status. JAMA Psychiatry, 78(4), 387-397. https://doi.org/10.1001/jamapsychiatry.2020.4172

Hvidtjørn, D., Grove, J., Schendel, D., Schieve, L., Sværke, C., Ernst, E. & Thorsen, P. (2011). Risk of Autism Spectrum Disorders in children born after assisted conception. A population based follow-up study. Journal of Epidemiology & Community Health, 65(6), 497-502. https://doi.org/10.1136/jech.2009.093823

Chatwin, H., Holde, K., Yilmaz, Z., Larsen, J. T., Albiñana, C., Vilhjálmsson, B. J., Mortensen, P. B., Thornton, L. M., Bulik, C. M. & Petersen, L. V. (2023). Risk factors for anorexia nervosa: A population-based investigation of sex differences in polygenic risk and early life exposures. International Journal of Eating Disorders, 56(9), 1703-1716. https://doi.org/10.1002/eat.23997

Ørbæk, M., Thorsteinsson, K., Moseholm Larsen, E., Katzenstein, T. L., Storgaard, M., Johansen, I. S., Pedersen, G., Bach, D., Helleberg, M., Weis, N. & Lebech, A. M. (2020). Risk factors during pregnancy and birth-related complications in HIV-positive versus HIV-negative women in Denmark, 2002–2014. HIV Medicine, 21(2), 84-95. https://doi.org/10.1111/hiv.12798

Nathan, N. O., Mørch, L. S., Wu, C. S., Olsen, J., Hetland, M. L., Li, J. & Rom, A. L. (2020). Rheumatoid arthritis and risk of spontaneous abortion: a Danish nationwide cohort study. Rheumatology (Oxford, England), 59(8), 1984-1991. https://doi.org/10.1093/rheumatology/kez565

Hein, J. & Wiuf, C. (2002). Review of GR Grant and WJ Ewens, `Statistical Methods in Bioinformatics: An Introduction' In Briefings in Bioinformatics (Vol. 3, pp. 318-319). Springer.

Bailey, M. H., Meyerson, W. U., Dursi, L. J., Wang, L. B., Dong, G., Liang, W. W., Weerasinghe, A., Li, S., Kelso, S., Akbani, R., Anur, P., Bailey, M. H., Buchanan, A., Chiotti, K., Covington, K., Creason, A., Ding, L., MC3 Working Group, PCAWG novel somatic mutation calling methods working group & PCAWG Consortium (2020). Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nature Communications, 11(1), Article 4748. https://doi.org/10.1038/s41467-020-18151-y

Nexø, B. A., Hansen, B., Nissen, K. K., Gundestrup, L., Terkelsen, T., Villesen, P., Bahrami, S., Petersen, T., Pedersen, F. S. & Laska, M. J. (2013). Restriction genes for retroviruses influence the risk of multiple sclerosis. PLOS ONE, 8(9), e74063. https://doi.org/10.1371/journal.pone.0074063

Aschard, H., Vilhjálmsson, B. J., Joshi, A. D., Price, A. L. & Kraft, P. (2016). Response to Day et al. American Journal of Human Genetics, 98(2), 394-5. https://doi.org/10.1016/j.ajhg.2015.12.020

Vosegaard, T., Bertelsen, K., Pedersen, J. M., Thøgersen, L., Schiøtt, B., Tajkhorshid, E., Skrydstrup, T. & Nielsen, N. C. (2008). Resolution Enhancement in Solid-State NMR of Oriented Membrane Proteins by Anisotropic Differential Linebroadening. Journal of the American Chemical Society, 130, 5028-5029.

Displaying results 251 to 300 out of 1317

Revised 21.08.2024

Palle Villesen