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Publications

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Scally, A., Dutheil, J. Y., Hillier, L. W., Jordan, G. E., Goodhead, I., Herrero, J., Hobolth, A., Lappalainen, T., Mailund, T., Marques-Bonet, T., McCarthy, S., Montgomery, S. H., Schwalie, P. C., Tang, Y. A., Ward, M. C., Xue, Y., Yngvadottir, B., Alkan, C., Andersen, L. N. ... Durbin, R. (2012). Insights into hominid evolution from the gorilla genome sequence. Nature, 483(7388), 169-75. https://doi.org/10.1038/nature10842
Lan, T., Leppälä, K., Tomlin, C., Talbot, S. L., Sage, G. K., Farley, S. D., Shideler, R. T., Bachmann, L., Wiig, Ø., Albert, V. A., Salojärvi, J., Mailund, T., Drautz-Moses, D. I., Schuster, S. C., Herrera-Estrella, L. & Lindqvist, C. (2022). Insights into bear evolution from a Pleistocene polar bear genome. Proceedings of the National Academy of Sciences (PNAS), 119(24), Article e2200016119. https://doi.org/10.1073/pnas.2200016119
Mailund, Pedersen, C. N. S., Bardino, J., Vinter, B. & Karlsen, H. H. (2005). Initial experiences with GeneRecon on MiG. In Proceedings of The 2005 International Conference on Grid Computing and Applications (GCA)
Boni, M. F., Gog, J. R., Andreasen, V. & Christiansen, F. B. (2004). Influenza drift and epidemic size: the race between generating and escaping immunity. Theoretical Population Biology, 65, 179-191.
Ravn, P., Forsberg, R. & Christiansen, F. (2007). Influenza: - menneskets uforudsigelige følgesvend. Aktuel Naturvidenskab, 2007(2), 16-20.
Cheng, Z., Little, M. W., Ferris, C., Takeda, H., Ingvartsen, K. L., Crowe, M. A., Wathes, D. C. & GplusE Consortium (2023). Influence of the concentrate inclusion level in a grass silage-based diet on hepatic transcriptomic profiles in Holstein-Friesian dairy cows in early lactation. Journal of Dairy Science, 106(8), 5805-5824. https://doi.org/10.3168/jds.2022-22860
Winters, J. F. M., Foldager, L., Krogh, U., Nørskov, N. & Sørensen, M. T. (2022). Influence of glyphosate residues in sow diets on piglet diarrhoea, kinky tails and stillbirth. In Book of Abstracts of the 73rd Annual Meeting of the European Federation of Animal Science (pp. 284-284). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-937-4
Andersen, L. N. (2011). Inferring Population Histories In The IM-model Using Site Pattern Analysis. Poster session presented at SMBE 2011, Kyoto, Japan.
Nielsen, S., Simonsen, S. & Hobolth, A. (2016). Inferring Population Genetic Parameters: Particle Filtering, HMM, Ripley’s K-Function or Runs of Homozygosity? In M. Frith & C. Nørgaard Storm Pedersen (Eds.), Algorithms in Bioinformatics - 16th International Workshop, WABI 2016, Proceedings (Vol. 9838, pp. 234-245). Springer. https://doi.org/10.1007/978-3-319-43681-4_19
Tataru, P. (2015). Inference of population history and patterns from molecular data. Department of Computer Science, Aarhus University.
Dam, M., Centanni, M., Friberg, L. E., Centanni, D., Karlsson, M. O., Stensig Lynggaard, L., Johannsdottir, I. M., Wik, H. S., Malmros, J., Vaitkeviciene, G. E., Griskevicius, L., Hallböök, H., Jónsson, Ó. G., Overgaard, U., Schmiegelow, K., Hansen, S. N., Heyman, M. & Albertsen, B. K. (2024). Increase in peg-asparaginase clearance as a predictor for inactivation in patients with acute lymphoblastic leukemia. Leukemia, 38(4), 712-719. https://doi.org/10.1038/s41375-024-02153-6
Nielsen, J., Foldager, L. & Meyer, J. M. (2009). Increased use of antibiotics in patients treated with clozapine. European Neuropsychopharmacology, 19(7), 483-486.
Holmstrup, M., Sørensen, J. G., Maraldo, K., Schmidt, I. K., Mason, S., Tietema, A., Smith, A. R., Emmett, B., Schmelz, R., Bataillon, T., Beier, C. & Ehlers, B. K. (2012). Increased frequency of drought reduces species richness of enchytraeid communities in both wet and dry heathland soils. Soil Biology & Biochemistry, 53, 43-49. https://doi.org/10.1016/j.soilbio.2012.05.001
Feng, S., Bai, M., Rivas-González, I., Li, C., Liu, S., Tong, Y., Yang, H., Chen, G., Xie, D., Sears, K. E., Franco, L. M., Gaitan-Espitia, J. D., Nespolo, R. F., Johnson, W. E., Yang, H., Brandies, P. A., Hogg, C. J., Belov, K., Renfree, M. B. ... Zhang, G. (2022). Incomplete lineage sorting and phenotypic evolution in marsupials. Cell, 185(10), 1646-1660.e18. https://doi.org/10.1016/j.cell.2022.03.034
Wiuf, C. H. & Stumpf, M. (2010). Incomplete and noisy network data as a percolation process. Journal of the Royal Society. Interface, 7(51), 1411-1419.
Glémin, S., Bataillon, T., Ronfort, J., Mignot, A. & Olivieri, I. (2001). Inbreeding depression in small populations of self-incompatible plants. Genetics, 159(3), 1217-29.
Maier, R. M., Zhu, Z., Lee, S. H., Trzaskowski, M., Ruderfer, D. M., Stahl, E. A., Ripke, S., Wray, N. R., Yang, J., Visscher, P. M., Robinson, M. R., Forstner, A. J., Mcquillin, A., Trubetskoy, V., Wang, W., Wang, Y., Coleman, J. R. I., Gaspar, H. A., De Leeuw, C. A. ... Zammit, S. (2018). Improving genetic prediction by leveraging genetic correlations among human diseases and traits. Nature Communications, 9(1), Article 989. https://doi.org/10.1038/s41467-017-02769-6
Thomsen, A. H., Villesen, P., Brink, O., Leth, P. M. & Hougen, H. P. (2020). Improved medical treatment could explain a decrease in homicides with a single stab wound. Forensic Science, Medicine, and Pathology, 16(3), 415-422. https://doi.org/10.1007/s12024-020-00246-z
Hobolth, A., Uyenoyama, M. K. & Wiuf, C. (2008). Importance sampling for the infinite sites model. Statistical Applications in Genetics and Molecular Biology, 7(1). https://doi.org/10.2202/1544-6115.1400