Publications

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Ge, F., Wang, Y., Liu, X., Munk-Olsen, T., Madsen, K. B., Pedersen, E. M., Albiñana, C., Agerbo, E., Bulik, C. M., Petersen, L. V., Valdimarsdottir, U. A. & Vilhjálmsson, B. J. (2026). Association Between Maternal Genome-Wide Polygenic Scores for Psychiatric and Neurodevelopmental Disorders and Adverse Perinatal Events: A Danish Population-Based Study. Biological Psychiatry Global Open Science, 6(1), Article 100613. https://doi.org/10.1016/j.bpsgos.2025.100613

Rast, J. E., Rosso, A. L., James, B. D., Underwood, J. F. G., Bergstedt, J., Ahlqvist, V. H., Grove, J., Fang, F., Goldstein, N. D., Vivanti, G., Levine, S. Z., Nordström, A., Schendel, D., Lyall, K., Nordström, P., Ballin, M., Stafford, J., Naj, A. C., Lee, B. K. & LEGENNDS Consortium (2026). Association of neurodevelopmental conditions with Alzheimer's disease and related dementias and Parkinson's disease. The Journals of Gerontology. Series A: Biological Sciences & Medical Sciences, 81(4), Article glaf281. https://doi.org/10.1093/gerona/glaf281

Rasmussen, A. M., Bouchard-Côté, A. & Pedersen, J. S. (2026). bayesReact: expression-coupled regulatory motif analysis detects microRNA activity across cancers, tissues, and at the single-cell level. Nucleic Acids Research, 54(4), Article gkag072. https://doi.org/10.1093/nar/gkag072

Andersen, L., Lindskrog, S. V., Nordentoft, I., Frydendahl, A., Nors, J., Henriksen, T. V., Rasmussen, M. H., Iversen, L. H., Gotschalck, K. A., Jensen, J. B., Dyrskjøt, L., Andersen, C. L. & Birkbak, N. J. (2026). Cell-Free DNA-Derived Immune Cell Ratios Uncover Cancer-Associated Systemic Changes. Cancer Research Communications, 6(4), 811-820. https://doi.org/10.1158/2767-9764.CRC-25-0747

AlZaim, I., Hassan, M. N., Schröter, M., Mannino, L., Dragicevic, K., Sjogaard, M. B., Festa, J., Dokshokova, L., Weinbrenner, S., Tardajos Ayllon, B., Hansen, B., Rasmussen, R. K., Christensen, J. N., Wagman, O., Schipper, R., Cai, M., Dheedene, W., Bohn, A. B., Farup, J. ... Kalucka, J. (2026). Defining the vascular niche of human adipose tissue across metabolic states. Nature Metabolism, 8(3), 722-740. https://doi.org/10.1038/s42255-026-01475-2

Natividad Avila, M., Jung, S., Satterstrom, F. K., Fu, J. M., Levy, T., Sloofman, L. G., Klei, L., Pichardo, T., Marquez, D., Stevens, C. R., Cusick, C. M., Ames, J. L., Campos, G. S., Cerros, H., Chaskel, R., Costa, C. I. S., Cuccaro, M. L., Lopez, A. D. P., Fernandez, M. ... The Autism Sequencing Consortium (ASC) (2026). Deleterious coding variation associated with autism is shared across ancestries. Nature Medicine. Advance online publication. https://doi.org/10.1038/s41591-026-04228-6

Westbury, M. V., Brown, S. C., Cabrera, A. A., Morales, H. E., Parreira, B., Ma, J., Coll Macià, M., Rey-Iglesia, A., Dyke, A., Scharff-Olsen, C. H., Scott, M. B., Wiig, Ø., Bachmann, L., Kovacs, K. M., Lydersen, C., Ferguson, S. H., Szpak, P., Fordham, D. A. & Lorenzen, E. D. (2026). Four centuries of commercial whaling eroded 11,000 years of population stability in bowhead whales. Cell, 189(7), 2040-2053.e19. https://doi.org/10.1016/j.cell.2026.02.022

Foldager, L., Lindgren, S. D., Gebreyesus, G. & Thodberg, K. (2026). Halevækst for ukuperede og kuperede svin fra fødsel til slagt: var den kuperet kortere end lovgivningen tillader? In P. Linde (Ed.), Symposium i Anvendt Statistik 2026 (pp. 184-193). Fødevare- og Ressourceøkonomisk Institut, Københavns Universitet & Symposium i Anvendt Statistik.

Georgaki, D., Canibe, N., van der Heide, M. E., Foldager, L., Poulsen, C. H., Mejldal, R., Velayudhan, D., Nørgaard, J. V. & Højberg, O. (2026). Impact of 1,2-α-L-fucosidase on pig enteric methane production and growth performance. Animal Microbiome, 8(1), Article 30. https://doi.org/10.1186/s42523-025-00487-9

Sørensen, M. T., Dalgaard, T. S., Kjærup, R. B., Mandrioli, D. & Foldager, L. (2026). Influence of glyphosate in feed on egg hatchability and health of chicks and breeder hens. British Poultry Science. Advance online publication. https://doi.org/10.1080/00071668.2026.2615732

Thodberg, K., Gebreyesus, G. & Foldager, L. (2026). Måling af halelængde hos grise med kuperede haler i deres vækstperiode. DCA - Nationalt Center for Fødevarer og Jordbrug. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Bergman, J., Bakarić, R. & Brčić-Kostić, K. (2026). Measures of gene indispensability reveal the parallelism between phylogeny and ontogeny. BioSystems, 261, Article 105710. https://doi.org/10.1016/j.biosystems.2026.105710

Goleva, S. B., Leu, C., Anne Feng, Y. C., Burstein, D., Venkatesh, S., Birnbaum, R., Rajagopal, V. M., Straub, P., Christensen, J., Bautista, J. F., Busch, R. M., Najm, I. M., Grove, J., Børglum, A. D., Voloudakis, G., Roussos, P., Smoller, J., Lal, D. & Davis, L. K. (2026). Multisite, Multiancestry Genome-Wide Association Study Meta-Analysis of Functional Seizure Disorder in a Hospital Sample of 675,680 Patients. Biological Psychiatry Global Open Science, 6(1), Article 100604. https://doi.org/10.1016/j.bpsgos.2025.100604

Kofod Petersen, A., Bindslev, D. A., Forgie, A., Villesen, P. & Staun Larsen, L. (2026). Objective comparison of 3D dental scans in forensic odontology identification. Forensic Imaging, 44, Article 200672. https://doi.org/10.1016/j.fri.2026.200672

Sendrowski, J. & Hobolth, A. (2026). PhaseGen: exact solutions for time-inhomogeneous multivariate coalescent distributions under diverse demographies. Genetics, 232(1), Article iyaf135. https://doi.org/10.1093/genetics/iyaf135

Wang, X., Aninta, S. G., Garcia-Erill, G., Li, Z., Khan, A., Liu, X., Bertola, L. D., Dharmayanthi, A. B., Yulianto, Yonathan, Rossi, C., Cauble-Sims, R., Rosen, B. D., Hagen, D. E., Heaton, M. P., Smith, T. P. L., Lenstra, J. A., Martins, N. F. G., Sinding, M. H. S. ... Heller, R. (2026). Population structure and domestication history of the Javan banteng. Current Biology, 36(2), 458-473.e8. https://doi.org/10.1016/j.cub.2025.11.076

Nocchi, G., Sendrowski, J., Shi, A., Boufford, B., Lamothe, M., Isabel, N. & Yeaman, S. (2026). Replicated hybrid zones reveal genomic patterns of local adaptation and introgression in spruce. Molecular Biology and Evolution, 43(4), Article msag074. https://doi.org/10.1093/molbev/msag074

Czyżewski, S., Søndergaard, S. A., Molnár, Á. P., Kerr, M. R., Kristensen, J. A., Atkinson, J., Trepel, J., Sykut, M., Radzikowski, P., Termansen, S. S., Wałach, K., Pearce, E. A., Pang, S. E. H., Zając, B., Bergman, J., Thomassen, E. S., Mungi, N., Fløjgaard, C., Ejrnæs, R. ... Svenning, J. C. (2026). Revisiting Europe's temperate forests: Palaeoecological evidence for an herbivory-driven woodland-grassland mosaic biome. Biological Conservation, 316, Article 111749. https://doi.org/10.1016/j.biocon.2026.111749

Sendrowski, J. S.-O. (2026). Robust Inference Software in Population Genetics. [PhD dissertation, Aarhus University].

Pečnerová, P., Ishida, Y., Garcia-Erill, G., Bertola, L. D., Santander, C. G., Liu, X., Brüniche-Olsen, A., Khan, A., Hennelly, L. M., Balboa, R. F., Lin, L., Rasmussen, M. S., Wang, X., Schubert, M., Al-Chaer, A., Urbaniak, S., Nobuta, K., Treadup, S., Viaud-Martinez, K. A. ... Roca, A. L. (2026). The genomic impact of population connectivity and decline in Africa’s elephants. Nature Communications, 17(1), Article 3223. https://doi.org/10.1038/s41467-026-71262-w

Bernatz, S., Prudente, V., Pai, S., Attermann, A. K., Di Federico, A., Rowan, A., Veeriah, S., Dyrskjøt, L., Nürnberg, L., Alessi, J. V., Ott, P. A., Sharon, E., Hackshaw, A., McGranahan, N., Abbosh, C., Mak, R. H., Bitterman, D., Awad, M., Ricciuti, B. ... Aerts, H. J. W. L. (2026). Thymic health and immunotherapy outcomes in patients with cancer. Nature. Advance online publication. https://doi.org/10.1038/s41586-026-10243-x

Bernatz, S., Prudente, V., Pai, S., Attermann, A. K., Cao, Y., Chen, J., Lyass, A., Foldyna, B., Nürnberg, L., Bressem, K., Abbosh, C., Swanton, C., Jamal-Hanjani, M., Lu, M. T., Murabito, J. M., Lunetta, K. L., Birkbak, N. J. & Aerts, H. J. W. L. (2026). Thymic health consequences in adults. Nature. Advance online publication. https://doi.org/10.1038/s41586-026-10242-y

Kobek-Kjeldager, C., Leishman, E. M., Verlaat, J. A., Wehrs, A., Thodberg, K., Foldager, L. & Herskin, M. S. (2026). Velfærd hos smågrise under lange transporter – Del B: Adgang til vand på lange transporter. DCA - Nationalt Center for Fødevarer og Jordbrug. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Kofod Petersen, A., Forgie, A., Villesen, P. & Staun Larsen, L. (2025). 3D dental similarity quantification in forensic odontology identification. Forensic Science International, 370, Article 112462. https://doi.org/10.1016/j.forsciint.2025.112462

Lassen, J. K. (2025). Addressing sources of variance in large-scale metabolomics. [PhD dissertation, Aarhus University]. Aarhus Universitet, Institut for Molekylærbiologi og genetik.

Andersen, L. & Birkbak, N. J. (2025). Advancing circulating tumor DNA detection: Using whole-genome sequencing to power minimal residual disease monitoring in breast cancer. Annals of Oncology, 36(6), 609-611. https://doi.org/10.1016/j.annonc.2025.03.008

Castenschiold, C. D. F., Mignani, C., Christiansen, S., Alsved, M., Ickes, L., Tesson, S. V. M., Löndahl, J., Bilde, M., Bataillon, T., Finster, K. & Šantl-Temkiv, T. (2025). Atmospheric Biogenic Ice-Nucleating Particles Link to Microbial Communities in the Arctic Marine Environment in Western Greenland. Environmental Science and Technology, 59(42), 22518-22532. https://doi.org/10.1021/acs.est.5c03650

Pedersen, E. M., Steinbach, J., Pedersen, C. B., Schork, A. J., Krebs, M. D., Vilhjálmsson, B. J. & Privé, F. (2025). Automatic detection of n-degree family members. Frontiers in Genetics, 16, Article 1708315. https://doi.org/10.3389/fgene.2025.1708315

Sørensen, E. F. (2025). Autosomal and X-chromosomal analysis of admixture and diversity patterns show extensive selection against admixture, as well as depletion of diversity on chromosome X. [PhD dissertation, Aarhus University].

Lousdal, M. L., LaBianca, S., Agerbo, E., Albiñana, C., Vilhjálmsson, B. J., McGrath, J. J., Schork, A. J. & Plana-Ripoll, O. (2025). Changes in polygenic burden for psychiatric disorders across two decades of birth cohorts. Nature Mental Health, 3(9), 1037-1045. https://doi.org/10.1038/s44220-025-00478-4

Sigurdsson, A. I., Gräf, J. F., Yang, Z., Ravn, K., Meisner, J., Thielemann, R., Webel, H., Smit, R. A. J., Niu, L., Mann, M., Vilhjalmsson, B., Neale, B. M., Holm, J.-C., Ganna, A., Hansen, T., Loos, R. J. F., Rasmussen, S. & FinnGen (2026). Complex genetic effects linked to plasma protein abundance in the UK Biobank. Nature Communications, 17(1), Article 533. Advance online publication. https://doi.org/10.1038/s41467-025-67235-0

Horsdal, H. T., Albiñana, C., Zhu, Z., Boelt, S. G., Borbye-Lorenzen, N., Cohen, A. S., Skogstrand, K., Melgaard, L., MacSween, N. J., Thorbek, M. J., Plana-Ripoll, O., Petersen, L. V., Bulik, C. M., Børglum, A. D., Mors, O., Nordentoft, M., Werge, T., Moen, G.-H., D'Urso, S. ... McGrath, J. J. (2025). Convergent evidence linking neonatal vitamin D status and risk of neurodevelopmental disorders: a Danish case-cohort study. The Lancet Psychiatry, 12(6), 410-420. https://doi.org/10.1016/S2215-0366(25)00099-9

Kobek-Kjeldager, C., Jensen, L. D., Foldager, L., Kaiser, M., Thodberg, K. & Herskin, M. S. (2025). Corrigendum to:“Deck height did not affect behavioural measures of ‘natural movements’ and ‘adequate ventilation’ during 8 h and 23 h transport of weaner pigs” (Applied Animal Behaviour Science, (2025), 290, C, (106714), (S0168159125002126), 10.1016/j.applanim.2025.106714). Applied Animal Behaviour Science, 292, Article 106793. https://doi.org/10.1016/j.applanim.2025.106793

Kobek-Kjeldager, C., Jensen, L. D., Foldager, L., Kaiser, M., Thodberg, K. & Herskin, M. S. (2025). Deck height did not affect behavioural measures of ‘natural movements’ and ‘adequate ventilation’ during 8 h and 23 h transport of weaner pigs. Applied Animal Behaviour Science, 290, Article 106714. https://doi.org/10.1016/j.applanim.2025.106714

AlZaim, I., Hassan, M. N., Schröter, M., Mannino, L., Dragicevic, K., Sjogaard, M. B., Festa, J., Dokshokova, L., Weinbrenner, S., Tardajos Ayllon, B., Hansen, B., Rasmussen, R. K., Christensen, J. N., Wagman, O., Schipper, R., Cai, M., Dheedene, W., Bohn, A. B., Farup, J. ... Kalucka, J. (2025). Defining the vascular niche of human adipose tissue across metabolic states. bioRxiv. https://doi.org/10.1101/2024.09.22.610444

Zhang, S., Ma, J., Riera Belles, M., Besenbacher, S., Niskanen, J. E., Salokorpi, N., Hundi, S., Hytönen, M. K., Zhou, T., Li, G.-M., Ostrander, E. A., Schierup, M. H., Lohi, H. & Wang, G.-D. (2025). Determinants of de novo mutations in extended pedigrees of 43 dog breeds. Genome Biology, 26(1), Article 305. https://doi.org/10.1186/s13059-025-03804-2

Giagnoni, G., Foldager, L., Stephansen, R. B., Liu, H., Lassen, J. & Weisbjerg, M. R. (2025). Do feed conversion efficiency and its inverse, feed conversion ratio, differ in their distributions for dairy cows?. 200. Abstract from 76th Annual Meeting of The European Federation of Animal Science, Innsbruck, Austria.

Lassen, J. K. & Villesen, P. (2025). End-To-End Deep Learning Explains Antimicrobial Resistance in Peak-Picking-Free MALDI-MS Data. Analytical Chemistry, 97(5), 2795-2800. https://doi.org/10.1021/acs.analchem.4c05113

Charmouh, A. P., Porsborg, P. S., Hansen, L. T., Besenbacher, S., Boeg Winge, S., Almstrup, K., Hobolth, A., Bataillon, T. & Schierup, M. H. (2025). Estimating Gene Conversion Tract Length and Rate From PacBio HiFi Data. Molecular Biology and Evolution, 42(2), Article msaf019. https://doi.org/10.1093/molbev/msaf019

Foldager, L. (2025). FAIR data and Open Science: some insights from a work package in the PIGWEB project. In P. Linde (Ed.), Symposium i Anvendt Statistik 2025 (pp. 49-54). Økonomisk Institut og Klinisk Institut, Syddansk Universitet & Symposium i Anvendt Statistik. http://www.statistiksymposium.dk/Symposium%202025%20hele%20bogen%20(10%20MB).pdf

Cabrejas-Olalla, A., Jørgensen, F. G., Cheng, J. Y., Kjærgaard, P. C., Schierup, M. H., Mailund, T. & Athanasiadis, G. (2025). Genetic predictions of eye and hair colour in the Danish population. Forensic Science International: Genetics, 78, Article 103267. https://doi.org/10.1016/j.fsigen.2025.103267

Garcia-Erill, G., Liu, S., Le, M. D., Hurley, M. M., Nguyen, H. D., Nguyen, D. Q., Nguyen, D. H., Santander, C. G., Sánchez Barreiro, F., Gomes Martins, N. F., Hanghøj, K., Salleh, F. M., Ramos-Madrigal, J., Wang, X., Sinding, M. H. S., Morales, H. E., Stæger, F. F., Wilkinson, N., Meng, G. ... Heller, R. (2025). Genomes of critically endangered saola are shaped by population structure and purging. Cell, 188(12), 3102-3116.e22. https://doi.org/10.1016/j.cell.2025.03.040

Strom, N. I., Gerring, Z. F., Galimberti, M., Yu, D., Halvorsen, M. W., Abdellaoui, A., Rodriguez-Fontenla, C., Sealock, J. M., Bigdeli, T., Coleman, J. R., Mahjani, B., Thorp, J. G., Bey, K., Burton, C. L., Luykx, J. J., Zai, G., Alemany, S., Andre, C., Askland, K. D. ... 23andMe Inc (2025). Genome-wide analyses identify 30 loci associated with obsessive–compulsive disorder. Nature Genetics, 57(6), 1389-1401. Article 230. https://doi.org/10.1038/s41588-025-02189-z

Strom, N. I., Halvorsen, M. W., Grove, J., Ásbjörnsdóttir, B., Luðvígsson, P., Thorarensen, Ó., de Schipper, E., Bäckmann, J., Andrén, P., Tian, C., Als, T. D., Nissen, J. B., Meier, S. M., Mattheisen, M., PGC TS Working Group & 23andMe Research Team (2025). Genome-Wide Association Study Meta-Analysis of 9619 Cases With Tic Disorders. Biological Psychiatry, 97(7), 743-752. https://doi.org/10.1016/j.biopsych.2024.07.025

TRACERx Consortium & Genomics England Consortium (2025). ImmuneLENS characterizes systemic immune dysregulation in aging and cancer. Nature Genetics, 57(3), 694-705. Article 305. https://doi.org/10.1038/s41588-025-02086-5

Dardani, C., Robinson, J. W., Jones, H. J., Rai, D., Stergiakouli, E., Grove, J., Gardner, R., McIntosh, A. M., Havdahl, A., Hemani, G., Davey Smith, G., Richardson, T. G., Gaunt, T. R. & Khandaker, G. M. (2025). Immunological drivers and potential novel drug targets for major psychiatric, neurodevelopmental, and neurodegenerative conditions. Molecular Psychiatry, 30(10), 4487-4496. Article e1004092. https://doi.org/10.1038/s41380-025-03032-x

Sendrowski, J., Bataillon, T. & Ramstein, G. P. (2025). In silico prediction of variant effects: promises and limitations for precision plant breeding. Theoretical and Applied Genetics, 138(8), Article 193. https://doi.org/10.1007/s00122-025-04973-1

Kofod Petersen, A., Spin-Neto, R., Villesen, P. & Staun Larsen, L. (2025). Late mandibular fracture after third molar extraction: a malpractice case or not? Journal of Forensic Odonto-Stomatology, 43(3), 49-58. https://doi.org/10.5281/zenodo.17990322

Porsborg, P. S., Charmouh, A. P., Singh, V. K., Winge, S. B., Hvilsom, C., Oroperv, C., Hansen, L. T., Berner, J. A., Pelizzola, M., Laurentino, S., Neuhaus, N., Hobolth, A., Bataillon, T., Besenbacher, S., Almstrup, K. & Schierup, M. H. (2025). Long-read sequencing of primate testis and human sperm allows identification of recombination events in individuals. Nature Communications, 16(1), Article 10337. https://doi.org/10.1038/s41467-025-65248-3

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Palle Villesen