Publications

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Bæk, Z. E. D., Macià, M. C., Skov, L. & Hobolth, A. (2026). Advanced Posterior Analyses of Hidden Markov Models: Finite Markov Chain Imbedding and Hybrid Decoding. Scandinavian journal of statistics. Advance online publication. https://doi.org/10.1111/sjos.70088

Oroperv, C., Frydendahl, A., Henriksen, T. V., Santacatterina, G., Antonello, A., Calonaci, N., Rasmussen, M. H., Caravagna, G., Andersen, C. L., Besenbacher, S. & IMPROVE-consortia (2026). An alignment-free strategy for circulating tumor DNA detection and tumor fraction estimation from whole-genome sequencing data. PLoS Computational Biology, 22(8), Article e1013356. https://doi.org/10.1371/journal.pcbi.1013356

Bundgaard, J. S., Ahlberg, G., Rand, S. A., Lundegaard, P. R., Stender, S., Vilhjálmsson, B. J., Kaspersen, K. A., Larsen, O. H., Schmidt, R. F., Bundgaard, H., Erikstrup, C. & Ghouse, J. (2026). Association between IL-6 and hs-CRP and Cardiovascular Risk in Clinically Relevant Subgroups. European Journal of Preventive Cardiology. Advance online publication. https://doi.org/10.1093/eurjpc/zwag139

Ge, F., Wang, Y., Liu, X., Munk-Olsen, T., Madsen, K. B., Pedersen, E. M., Albiñana, C., Agerbo, E., Bulik, C. M., Petersen, L. V., Valdimarsdottir, U. A. & Vilhjálmsson, B. J. (2026). Association Between Maternal Genome-Wide Polygenic Scores for Psychiatric and Neurodevelopmental Disorders and Adverse Perinatal Events: A Danish Population-Based Study. Biological Psychiatry Global Open Science, 6(1), Article 100613. https://doi.org/10.1016/j.bpsgos.2025.100613

Rast, J. E., Rosso, A. L., James, B. D., Underwood, J. F. G., Bergstedt, J., Ahlqvist, V. H., Grove, J., Fang, F., Goldstein, N. D., Vivanti, G., Levine, S. Z., Nordström, A., Schendel, D., Lyall, K., Nordström, P., Ballin, M., Stafford, J., Naj, A. C., Lee, B. K. & LEGENNDS Consortium (2026). Association of neurodevelopmental conditions with Alzheimer's disease and related dementias and Parkinson's disease. The Journals of Gerontology. Series A: Biological Sciences & Medical Sciences, 81(4), Article glaf281. https://doi.org/10.1093/gerona/glaf281

Villesen, P., Nielsen, K. L. & Frisch, K. (2026). Automated separation of overlapping fingermarks by non-negative matrix factorization of DESI mass spectrometry imaging data. Analytical and Bioanalytical Chemistry, 418(14), 4321-4332. https://doi.org/10.1007/s00216-026-06574-3

Rasmussen, A. M., Bouchard-Côté, A. & Pedersen, J. S. (2026). bayesReact: expression-coupled regulatory motif analysis detects microRNA activity across cancers, tissues, and at the single-cell level. Nucleic Acids Research, 54(4), Article gkag072. https://doi.org/10.1093/nar/gkag072

Hall, A. S. M., Musliner, K., Debost, J.-C. P. G., Vilhjálmsson, B. J., Chang, Z., D’Onofrio, B. M., Lichtenstein, P., Kuja-Halkola, R. & Brikell, I. (2026). Borderline personality disorder and other psychiatric, somatic, and behavioral conditions: a nationwide family study. Translational Psychiatry, 16(1), Article 257. https://doi.org/10.1038/s41398-026-04001-w

Andersen, L., Lindskrog, S. V., Nordentoft, I., Frydendahl, A., Nors, J., Henriksen, T. V., Rasmussen, M. H., Iversen, L. H., Gotschalck, K. A., Jensen, J. B., Dyrskjøt, L., Andersen, C. L. & Birkbak, N. J. (2026). Cell-Free DNA-Derived Immune Cell Ratios Uncover Cancer-Associated Systemic Changes. Cancer Research Communications, 6(4), 811-820. https://doi.org/10.1158/2767-9764.CRC-25-0747

Labianca, S., Lousdal, M. L., Krebs, M. D., Hansen, O. S., Hellberg, K. L. G., Lundberg, M., Sørensen, J. Ø., Gådin, J. R., Ohlsson, H., Grove, J., Børglum, A., Agerbo, E., Werge, T., Albiñana, C., Vilhjálmsson, B. J., Kendler, K. S., Plana-Ripoll, O. & Schork, A. J. (2026). Changes in Genetic Contributions to ASD and ADHD by Year of Diagnosis. JAMA Psychiatry, 83(9), 921-929. https://doi.org/10.1001/jamapsychiatry.2026.1450

Faber, A. H., Bataillon, T. & Ehlers, B. K. (2026). Climate-Driven Convergence of Chemical Ecotypes in Mediterranean Lamiaceae. Journal of Biogeography, 53(5), Article e70247. https://doi.org/10.1111/jbi.70247

Okewole, A., Bourque, V. R., Koko, M., Huguet, G., Borglum, A. D., Grove, J., Jacquemont, S., Baron-Cohen, S. & Warrier, V. (2026). Common genetic variants are associated with increased likelihood of latent co-occurring neurodevelopmental and mental health factors among autistic individuals. Molecular Psychiatry. Advance online publication. https://doi.org/10.1038/s41380-026-03880-1

Sigurdsson, A. I., Gräf, J. F., Yang, Z., Ravn, K., Meisner, J., Thielemann, R., Webel, H., Smit, R. A. J., Niu, L., Mann, M., Vilhjalmsson, B., Neale, B. M., Holm, J.-C., Ganna, A., Hansen, T., Loos, R. J. F., Rasmussen, S. & FinnGen (2026). Complex genetic effects linked to plasma protein abundance in the UK Biobank. Nature Communications, 17(1), Article 533. https://doi.org/10.1038/s41467-025-67235-0

Lee, H., Ko, K., Kim, S., Lee, G., Kim, S., Lee, J., Song, D. Y., Bong, G., Han, J. H., Lee, J., Kim, Y. R., Lee, Y., Kim, E., Børglum, A. D., Grove, J., Kim, S. H., Sun, W., Yoo, H. J. & An, J. Y. (2026). Co-occurrence of rare variants implicates gene pairs in cytoskeletal pathways and is associated with increased severity in autism spectrum disorder. Genome Biology, 27(1), Article 147. https://doi.org/10.1186/s13059-026-04041-x

AlZaim, I., Hassan, M. N., Schröter, M., Mannino, L., Dragicevic, K., Sjogaard, M. B., Festa, J., Dokshokova, L., Weinbrenner, S., Tardajos Ayllon, B., Hansen, B., Rasmussen, R. K., Christensen, J. N., Wagman, O., Schipper, R., Cai, M., Dheedene, W., Bohn, A. B., Farup, J. ... Kalucka, J. (2026). Defining the vascular niche of human adipose tissue across metabolic states. Nature Metabolism, 8(3), 722-740. https://doi.org/10.1038/s42255-026-01475-2

Natividad Avila, M., Jung, S., Satterstrom, F. K., Fu, J. M., Levy, T., Sloofman, L. G., Klei, L., Pichardo, T., Marquez, D., Stevens, C. R., Cusick, C. M., Ames, J. L., Campos, G. S., Cerros, H., Chaskel, R., Costa, C. I. S., Cuccaro, M. L., Lopez, A. D. P., Fernandez, M. ... The Autism Sequencing Consortium (ASC) (2026). Deleterious coding variation associated with autism is shared across ancestries. Nature Medicine, 32(4), 1519-1529. https://doi.org/10.1038/s41591-026-04228-6

Peyrot, W. J., Panagiotaropoulou, G., Olde Loohuis, L. M., Adams, M. J., Andreassen, O. A., Awasthi, S., Forstner, A. J., Ge, T., McIntosh, A. M., Mitchell, B. L., Mullins, N., O’Connell, K. S., Penninx, B. W. J. H., Posthuma, D., Ripke, S., Ruderfer, D. M., Uffelmann, E., Vilhjalmsson, B. J., Zhu, Z. ... Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium (2026). Distinguishing different psychiatric disorders using DDx-PRS. Nature Genetics, 58(9), 2371–2380. https://doi.org/10.1038/s41588-026-02684-x

Nielsen, K. L., Lassen, J. K., Løber, I. M. M. M., Skovbo, F., Frisch, K., Czaja, T. P., Khakimov, B., Engelsen, S. B., Johannsen, M. & Villesen, P. (2026). Donor-Independent Metabolomics Enables Bloodstain Age Determination at Crime Scenes. Journal of Proteome Research, 25(7), 3671-3680. https://doi.org/10.1021/acs.jproteome.6c00199

Coll Macià, M., Skov, L., Bæk, Z. E. D. & Hobolth, A. (2026). Enhancement of hidden Markov model analyses for improved inference of archaic introgression in modern humans. Molecular Biology and Evolution, 43(6), Article msag134. https://doi.org/10.1093/molbev/msag134

Birkbak, N. J., TRACERx Consortium, TRACERx EVO Consortium & PEACE Consortium (2026). Evolutionary characterization of lung cancer metastasis. Nature, 653(8115), 911-922. https://doi.org/10.1038/s41586-026-10428-4

Xue, Y., Foldager, L., Thodberg, K. & Gebreyesus, G. (2026). Found in translation: building explainable model for transparent decision making and interdisciplinary communication in precision livestock farming. Abstract from Artificial Intelligence 4 Animal Science - EAAP conference, Ghent, Belgium.

Westbury, M. V., Brown, S. C., Cabrera, A. A., Morales, H. E., Parreira, B., Ma, J., Coll Macià, M., Rey-Iglesia, A., Dyke, A., Scharff-Olsen, C. H., Scott, M. B., Wiig, Ø., Bachmann, L., Kovacs, K. M., Lydersen, C., Ferguson, S. H., Szpak, P., Fordham, D. A. & Lorenzen, E. D. (2026). Four centuries of commercial whaling eroded 11,000 years of population stability in bowhead whales. Cell, 189(7), 2040-2053.e19. https://doi.org/10.1016/j.cell.2026.02.022

Maseras, G. T., Chen, D., Albiñana, C., Petersen, L. V., Arias, B., Agerbo, E., Musliner, K. L., Vilhjálmsson, B. J. & Plana-Ripoll, O. (2026). Gender-specific associations between polygenic scores and age-specific risk of psychiatric disorders. British Journal of Psychiatry, 1-8. Advance online publication. https://doi.org/10.1192/bjp.2026.10759

Hollowell, A., Gui, A., Wigdor, E., Morgan, M. J., Hannigan, L. J., Corfield, E. C., Pool, R., Bruins, S., Ask, H., Middeldorp, C. M., Pourcain, B. S., Bartels, M., Boomsma, D. I., Hartman, C. A., Noda, A., Takahashi, I., Ishikuro, M., Obara, T., Kuriyama, S. ... Autism Spectrum Disorder Working Group of the Psychiatric Genomics Consortium (2026). Genome-wide association studies of infant and toddler temperament in European and multi-ancestry populations. Nature Human Behaviour, 10, 1821–1840. https://doi.org/10.1038/s41562-026-02486-5

Hübel, C., Yilmaz, Z., Grove, J., Larsen, J. T., Børglum, A. D., Disorders Working Group of the Psychiatric Genomics Consortium & Estonian Biobank (EstBB) (2026). Genomic meta-analyses of binge-eating behavior and anorexia nervosa yield insights into the unique and shared biology of eating disorder phenotypes. Nature Mental Health, 4, 1361–1377. https://doi.org/10.1038/s44220-026-00698-2

Foldager, L., Lindgren, S. D., Gebreyesus, G. & Thodberg, K. (2026). Halevækst for ukuperede og kuperede svin fra fødsel til slagt: var den kuperet kortere end lovgivningen tillader? In P. Linde (Ed.), Symposium i Anvendt Statistik 2026 (pp. 184-193). Fødevare- og Ressourceøkonomisk Institut, Københavns Universitet & Symposium i Anvendt Statistik.

Marquart Løber, I. M., Ward, L. J., Elmsjö, A., Söderberg, C., Villesen, P., Nielsen, K. L. & Green, H. (2026). Human-to-Rat Validation of PMI Biomarkers: A Bidirectional Cross-Species Metabolomics Study Reveals Asymmetric Translation. Analytical Chemistry, 98(20), 14883-14890. https://doi.org/10.1021/acs.analchem.6c00202

Georgaki, D., Canibe, N., van der Heide, M. E., Foldager, L., Poulsen, C. H., Mejldal, R., Velayudhan, D., Nørgaard, J. V. & Højberg, O. (2026). Impact of 1,2-α-L-fucosidase on pig enteric methane production and growth performance. Animal Microbiome, 8(1), Article 30. https://doi.org/10.1186/s42523-025-00487-9

Sørensen, M. T., Krogh, U., Højberg, O., Nørskov, N. P. & Foldager, L. (2026). Influence of diet glyphosate residues on performance and mineral status in group-housed weaning pigs. Livestock Science, 311, 1-7. Article 106001. https://doi.org/10.1016/j.livsci.2026.106001

Sørensen, M. T., Dalgaard, T. S., Kjærup, R. B., Mandrioli, D. & Foldager, L. (2026). Influence of glyphosate in feed on egg hatchability and health of chicks and breeder hens. British Poultry Science. Advance online publication. https://doi.org/10.1080/00071668.2026.2615732

Pedersen, C. N., Sandholt, B. V., Carstensen, M. H., Hansen, M. L., Jørgensen, T. M., Londero, L. S., Hansen, R. L., Nicolajsen, C. W. & Ingeman, A. (2026). Landsregistret Karbase: Det nytter at sætte fokus på kvalitetsbrist I 2022 var regional variation i amputationer på den sundhedspolitiske dagsorden. Siden har alle regioner arbejdet intenst på at identificere og organisere amputationsforebyggende tiltag. Nu ses effekten. Ugeskrift for Laeger, 2025(1).

Pedersen, E. M., Steinbach, J., Valstad, M., Ohlsson, H., Rasmussen, L. A., Eilertsen, E. M., Kendler, K. S., Vilhjálmsson, B. J., Schork, A. J. & Krebs, M. D. (2026). Lt-fgrs: a unifying R-package for the estimation of family-based genetic liabilities at population-scale. bioRxiv. https://doi.org/10.64898/2026.06.15.731517

Thodberg, K., Gebreyesus, G. & Foldager, L. (2026). Måling af halelængde hos grise med kuperede haler i deres vækstperiode. DCA - Nationalt Center for Fødevarer og Jordbrug. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Auning, J., Trabjerg, B. B., Dreier, J. W., Vilhjálmsson, B. J. & Christensen, J. (2026). Mapping the heritability of disease: a nationwide study. Nature Communications, 17(1), Article 4080. https://doi.org/10.1038/s41467-026-69991-z

Bergman, J., Bakarić, R. & Brčić-Kostić, K. (2026). Measures of gene indispensability reveal the parallelism between phylogeny and ontogeny. BioSystems, 261, Article 105710. https://doi.org/10.1016/j.biosystems.2026.105710

Goleva, S. B., Leu, C., Anne Feng, Y. C., Burstein, D., Venkatesh, S., Birnbaum, R., Rajagopal, V. M., Straub, P., Christensen, J., Bautista, J. F., Busch, R. M., Najm, I. M., Grove, J., Børglum, A. D., Voloudakis, G., Roussos, P., Smoller, J., Lal, D. & Davis, L. K. (2026). Multisite, Multiancestry Genome-Wide Association Study Meta-Analysis of Functional Seizure Disorder in a Hospital Sample of 675,680 Patients. Biological Psychiatry Global Open Science, 6(1), Article 100604. https://doi.org/10.1016/j.bpsgos.2025.100604

Kofod Petersen, A., Bindslev, D. A., Forgie, A., Villesen, P. & Staun Larsen, L. (2026). Objective comparison of 3D dental scans in forensic odontology identification. Forensic Imaging, 44, Article 200672. https://doi.org/10.1016/j.fri.2026.200672

Sendrowski, J. & Hobolth, A. (2026). PhaseGen: exact solutions for time-inhomogeneous multivariate coalescent distributions under diverse demographies. Genetics, 232(1), Article iyaf135. https://doi.org/10.1093/genetics/iyaf135

Wang, X., Aninta, S. G., Garcia-Erill, G., Li, Z., Khan, A., Liu, X., Bertola, L. D., Dharmayanthi, A. B., Yulianto, Yonathan, Rossi, C., Cauble-Sims, R., Rosen, B. D., Hagen, D. E., Heaton, M. P., Smith, T. P. L., Lenstra, J. A., Martins, N. F. G., Sinding, M. H. S. ... Heller, R. (2026). Population structure and domestication history of the Javan banteng. Current Biology, 36(2), 458-473.e8. https://doi.org/10.1016/j.cub.2025.11.076

Coutant, M. P., Foldager, L., Pedersen, L. J., Larsen, M. L. V. & Kaiser, M. (2026). Prepartum postural patterns and farrowing outcomes in sows with and without postpartum dysgalactia syndrome in crated and loose housing systems. Applied Animal Behaviour Science, 304, 1-7. Article 107123. https://doi.org/10.1016/j.applanim.2026.107123

Nocchi, G., Sendrowski, J., Shi, A., Boufford, B., Lamothe, M., Isabel, N. & Yeaman, S. (2026). Replicated hybrid zones reveal genomic patterns of local adaptation and introgression in spruce. Molecular Biology and Evolution, 43(4), Article msag074. https://doi.org/10.1093/molbev/msag074

Czyżewski, S., Søndergaard, S. A., Molnár, Á. P., Kerr, M. R., Kristensen, J. A., Atkinson, J., Trepel, J., Sykut, M., Radzikowski, P., Termansen, S. S., Wałach, K., Pearce, E. A., Pang, S. E. H., Zając, B., Bergman, J., Thomassen, E. S., Mungi, N., Fløjgaard, C., Ejrnæs, R. ... Svenning, J. C. (2026). Revisiting Europe's temperate forests: Palaeoecological evidence for an herbivory-driven woodland-grassland mosaic biome. Biological Conservation, 316, Article 111749. https://doi.org/10.1016/j.biocon.2026.111749

Sendrowski, J. S.-O. (2026). Robust Inference Software in Population Genetics. [PhD dissertation, Aarhus University].

Pečnerová, P., Ishida, Y., Garcia-Erill, G., Bertola, L. D., Santander, C. G., Liu, X., Brüniche-Olsen, A., Khan, A., Hennelly, L. M., Balboa, R. F., Lin, L., Rasmussen, M. S., Wang, X., Schubert, M., Al-Chaer, A., Urbaniak, S., Nobuta, K., Treadup, S., Viaud-Martinez, K. A. ... Roca, A. L. (2026). The genomic impact of population connectivity and decline in Africa’s elephants. Nature Communications, 17(1), Article 3223. https://doi.org/10.1038/s41467-026-71262-w

Bernatz, S., Prudente, V., Pai, S., Attermann, A. K., Di Federico, A., Rowan, A., Veeriah, S., Dyrskjøt, L., Nürnberg, L., Alessi, J. V., Ott, P. A., Sharon, E., Hackshaw, A., McGranahan, N., Abbosh, C., Mak, R. H., Bitterman, D., Awad, M., Ricciuti, B. ... Aerts, H. J. W. L. (2026). Thymic health and immunotherapy outcomes in patients with cancer. Nature, 652(8111), 995-1003. https://doi.org/10.1038/s41586-026-10243-x

Bernatz, S., Prudente, V., Pai, S., Attermann, A. K., Cao, Y., Chen, J., Lyass, A., Foldyna, B., Nürnberg, L., Bressem, K., Abbosh, C., Swanton, C., Jamal-Hanjani, M., Lu, M. T., Murabito, J. M., Lunetta, K. L., Birkbak, N. J. & Aerts, H. J. W. L. (2026). Thymic health consequences in adults. Nature, 652(8111), 986-994. https://doi.org/10.1038/s41586-026-10242-y

Prudente, V., Bernatz, S., Pai, S., Atkins, K. M., Pecci, F., Garbo, E., Bressem, K., Guthier, C. V., Warrington, A., Tonneau, M., Ciausu, C., Yu, S., Thompson, L., Mannarino, E., Attermann, A. K., Nürnberg, L., Kehayias, C. E., Abbosh, C., Swanton, C. ... Aerts, H. J. W. L. (2026). Thymic radiation is associated with worse outcomes in patients with NSCLC. Annals of Oncology, 37(10), 1345-1357. https://doi.org/10.1016/j.annonc.2026.07.001

Lunde, S. J., Emborg, C., Kothari, S. F., Foldager, L., Geers, A. L. & Vase, L. (2026). To Ask or Not to Ask: Does Inquiring About Participants' Expectations Influence the Placebo Effect? A Placebo Mechanism Study in Healthy Volunteers. European Journal of Pain, 30(8), Article e70384. https://doi.org/10.1002/ejp.70384

Pedersen, B. M., Bergman, J., Pankratov, V. & Schierup, M. H. (2026). Ubiquitous impact of natural selection on nucleotide diversity in 178 species of primates. Genome Biology, 27(1), Article 203. https://doi.org/10.1186/s13059-026-04093-z

Brindle, J. E., Foldager, L., Tahamtani, F. M., Krogh, M. & Riber, A. B. (2026). Validity and reliability of the Organic method used for assessment of plumage damage in laying hens. Poultry Science, 105(12), Article 107687. https://doi.org/10.1016/j.psj.2026.107687

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Palle Villesen