Publications

Sort by: Date | Author | Title

Christiansen, F. B. (2004). Lecture Notes in Population Genetics. Eget.

Christiansen, F. B. (2003). Lecture Notes in Population Genetics. Eget.

Christiansen, F. B. (2001). Lecture Notes in Population Genetics. Eget.

Cheng, J. Y. (2016). Learning with Admixture: Modeling, Optimization, and Applications in Population Genetics. http://www.jade-cheng.com/au/tmp/thesis/thesis.pdf

Kristensen, T. G., Pedersen, C. S., Thomsen, R. & Christensen, M. H. (2009). Largest Common Chemical Feature Subtree as a Virtual Screening Method. Poster session presented at 17th Annual International Conference on Intelligent Systems for Molecular Bioligy (ISMB) & 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden. http://www.iscb.org/ismbeccb2009/poster_list.php?cat=C

Satterstrom, F. K., Kosmicki, J. A., Wang, J., Breen, M. S., De Rubeis, S., An, J. Y., Peng, M., Collins, R., Grove, J., Klei, L., Stevens, C., Reichert, J., Mulhern, M. S., Artomov, M., Gerges, S., Sheppard, B., Xu, X., Bhaduri, A., Norman, U. ... Børglum, A. D. (2020). Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism. Cell, 180(3), 568-584.e23. https://doi.org/10.1016/j.cell.2019.12.036

Pedersen, B. P., Ifrim, G., Liboriussen, P., Axelsen, K. B., Palmgren, M. G., Nissen, P., Wiuf, C. H. & Pedersen, C. N. S. (2014). Large Scale Identification and Categorization of Protein Sequences Using Structured Logistic Regression. P L o S One, 9(1), [e85139]. https://doi.org/10.1371/journal.pone.0085139

Wiuf, C., Pallesen, J., Foldager, L. & Grove, J. (2016). LandScape: a simple method to aggregate p--Values and other stochastic variables without a priori grouping. Statistical Applications in Genetics and Molecular Biology, 15(4), 349-361. https://doi.org/10.1515/sagmb-2015-0085

Dahl-Pedersen, K., Foldager, L., Herskin, M. S., Houe, H. & Thomsen, P. T. (2018). Lameness scoring and assessment of fitness for transport in dairy cows: Agreement among and between farmers, veterinarians and livestock drivers. Research in Veterinary Science, 119, 162-166. https://doi.org/10.1016/j.rvsc.2018.06.017

Devantier, T. A., Nørgaard, B. L., Sand, N. P., Mols, R. E., Foldager, L., Diederichsen, A. C. P., Thomsen, K. K., Jensen, J. M. & Videbech, P. (2013). Lack of Correlation Between Depression and Coronary Artery Calcification in a Non-Selected Danish Population. Psychosomatics, 54(5), 458-65. https://doi.org/10.1016/j.psym.2013.01.005

Fonseca, B., Zakaria, C., Jia, J. J., Graber, T. E., Svitkin, Y., Tahmasebi, S., Healy, D., Hoang, HD., Jensen, J. M., Diao, I. T., Lussier, A., Dajadian, C., Padmanabhan , N., Wang, W., Matta-Camacho, E., Hearnden, J., Smith, EM., Tsukumo , Y., Yanagiya, A. ... Damgaard, C. K. (2015). La-related protein 1 (LARP1) represses terminal oligopyrimidine (TOP) mRNA translation downstream of mTOR complex 1 (mTORC1). Journal of Biological Chemistry, 290, 15996-16020. https://doi.org/10.1074/jbc.M114.621730

Madsen, L. H., Fukai, E., Radutoiu, E. S., Yost, C. K., Sandal, N. N., Schauser, L. & Stougaard, J. (2005). LORE1, an active low-copy-number TY3-gypsy retrotransposon family in the model legume Lotus japonicus. Plant. J., 44, 372-381.

Privé, F., Arbel, J. & Vilhjálmsson, B. J. (2020). LDpred2: better, faster, stronger. Bioinformatics, 36(22-23), 5424-5431. https://doi.org/10.1093/bioinformatics/btaa1029

Kongsted, H., Foldager, L. & Sørensen, J. T. (2020). Kødkontrollen fanger ikke forekomst af halebid på hele haler. Dansk Veterinærtidsskrift, 2020(7), 18-19. https://dvt.ddd.dk/bladarkiv/2020/nr-07/koedkontrollen-fanger-ikke-forekomst-af-halebid-paa-hele-haler/

Bache, C., Christiansen, F., Harder, P., Rørdam, M., Smith, N. & Sneppen, K. (2011). Kvalitet i universitetsuddannelserne - forskningsbaseret undervisning: Forskningspolitisk årsmøde 2011. Det Kongelige Danske Videnskabernes Selskab.

Villesen, P., Gosmer, K. & Lindholst, C. (2011). Kemiske fingeraftryk fælder narkoforbryderne. Aktuel Naturvidenskab, (3).

Tahamtani, F., Herskin, M. S., Foldager, L., Murrell, J., Sandercock, D. & Riber, A. B., (2019). Karakterisering af konventionelle slagtekyllinger med gait score 2 i forhold til mobilitet, adfærd, smerte, morfologi og patologi, No. 2019-760-001056, 7 p., Nov 20, 2019.

Ehlers, B., Holmstrup, M., Schmidt, I. K., Sørensen, J. G. & Bataillon, T. (2018). Joint impact of competition, summer precipitation, and maternal effects on survival and reproduction in the perennial Hieracium umbellatum. Evolutionary Ecology, 32(5), 529-545. https://doi.org/10.1007/s10682-018-9953-4

Hollegaard, M. V., Skogstrand, K., Thorsen, P., Nørgaard-Petersen, B., Hougaard, D. & Grove, J. (2013). Joint analysis of SNPs and proteins identifies regulatory IL18 gene variations decreasing the chance of spastic cerebral palsy. Human Mutation, 34(1).

Leroy, T., Rousselle, M., Tilak, M. K., Caizergues, A. E., Scornavacca, C., Recuerda, M., Fuchs, J., Illera, J. C., De Swardt, D. H., Blanco, G., Thébaud, C., Milá, B. & Nabholz, B. (2021). Island songbirds as windows into evolution in small populations. Current Biology, 31(6), 1303-1310.e4. https://doi.org/10.1016/j.cub.2020.12.040

Wright, M., Smed, M. K., Nelson, J. L., Olsen, J., Hetland, M. L., Zoffmann, V. & Jawaheer, D. (2021). Is gene expression among women with rheumatoid arthritis dysregulated during a postpartum flare? Arthritis Research and Therapy, 23, [30]. https://doi.org/10.1186/s13075-021-02418-w

Nexø, B. A., Nissen, K. K., Hansen, B., Laska, M. J., Villesen, P., Christensen, T., Oturai, A. B., Møller-Larsen, A., Petersen, T. & Pedersen, F. S. (2010). Involvement of the endogenous HERV-F(c)1 retroviral locus on the human X chromosome in the etiology of multiple sclerosis. Journal of NeuroVirology, (S1), 61.

De Mita, S., Ronfort, J., McKhann, H. I., Poncet, C., El Malki, R. & Bataillon, T. (2007). Investigation of the demographic and selective forces shaping the nucleotide diversity of genes involved in nod factor signaling in Medicago truncatula. Genetics, 177(4), 2123-33. https://doi.org/10.1534/genetics.107.076943

Dieter, Strutwolf, J. & Thøgersen, L. (2001). Investigation of some starting protocols for BDF (FIRM) in electrochemical digital simulation. Journal of Electroanalytical Chemistry, 512, 119-123.

Nielsen, J., Pedersen, C. S. & Hein, J. (2009). Investigation of a simple heuristic improving the speed of statistical alignments. Poster session presented at 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden.

Speed, D., Hemani, G., Speed, M. S., Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium & Børglum, A. D. (2019). Investigating the causal relationship between neuroticism and depression via Mendelian Randomization. Acta Psychiatrica Scandinavica, 139(4), 395-397. https://doi.org/10.1111/acps.13009

Speed, M. S., Jefsen, O. H., Børglum, A. D., Speed, D. & Østergaard, S. D. (2019). Investigating the association between body fat and depression via Mendelian randomization. Translational Psychiatry, 9, [184]. https://doi.org/10.1038/s41398-019-0516-4

Debost, J-C., Petersen, L., Grove, J., Khashan, A., Henriksen, T., Mors, O., Hollegaard, M., Hougaard, D., Nyegaard, M., Børglum, A. & Mortensen, P. B. (2015). Investigating interactions between early life stress and two single nucleotide polymorphisms in HSD11B2 on the risk of schizophrenia. Psychoneuroendocrinology, 60, 18-27. https://doi.org/10.1016/j.psyneuen.2015.05.013

de Groot, S., Mailund, T., Lunter, G. & Hein, J. (2008). Investigating Selection on Viruses: A Statistical Alignment Approach. B M C Bioinformatics, 9(308).

Fredsted, T., Wincentz, T. & Villesen, P. (2006). Introgression of mountain hare (Lepus timidus) mitochondrial DNA into wild brown hares (Lepus europaeus) in Denmark. B M C Ecology, 6(17).

Christiansen, F. (1988). Intraspecific competition and evolution: Contributions to Theoretical Ecology. Paper presented at Intraspecific competition and evolution, Julich, Germany.

Christiansen, F. & Loeschcke, V. (1980). Intraspecific competition and evolution. In C. Barigozzi (Ed.), Vito Volterra Symposium on Mathematical Models in Biology (pp. 151-170). Springer.

Miege, C., Ruffio-Chable, V., Schierup, M. H., Cabrillac, D., Dumas, C., Gaude, T. & Cock, J. M. (2001). Intrahaplotype Polymorphism at the Brassica S Locus. Genetics, 159, 811-822.

Pearce, B. D., Grove, J., Bonney, E. A., Bliwise, N., Dudley, D. J., Schendel, D. & Thorsen, P. (2010). Interrelationship of cytokines, hypothalamic-pituitary-adrenal axis hormones, and psychosocial variables in the prediction of preterm birth. Gynecologic and Obstetric Investigation, 70(1), 40-46. https://doi.org/10.1159/000284949

Grove, J., Foldager, L., Demontis, D., Hollegaard, M. V., Pedersen, C. B., Yolken, R. H., Hougaard, D. M., Mors, O., Mortensen, P. B., The Psychiatric Genomics Consortium – Schizophrenia & Børglum, A. (2013). Interaction between polygenic scores for schizophrenia and infection by herpes simples virus 1 and 2. Poster session presented at XXIst World Congress of Psychiatric Genetics, Boston, United States.

Paczkowska, M., Barenboim, J., Sintupisut, N., Fox, N. S., Zhu, H., Abd-Rabbo, D., Mee, M. W., Boutros, P. C., PCAWG Drivers and Functional Interpretation Working Group, Reimand, J. & PCAWG Consortium (2020). Integrative pathway enrichment analysis of multivariate omics data. Nature Communications, 11(1), [735]. https://doi.org/10.1038/s41467-019-13983-9

Winge, S. B., Soraggi, S., Schierup, M. H., Rajpert-De Meyts, E. & Almstrup, K. (2020). Integration and reanalysis of transcriptomics and methylomics data derived from blood and testis tissue of men with 47,XXY Klinefelter syndrome indicates the primary involvement of Sertoli cells in the testicular pathogenesis. American Journal of Medical Genetics. Part C: Seminars in Medical Genetics, 184(2), 239-255. https://doi.org/10.1002/ajmg.c.31793

GROUP Investigators & iPSYCH-GEMS SCZ (Jakob Grove, member of -) (2014). Integrated Pathway-Based Approach Identifies Association between Genomic Regions at CTCF and CACNB2 and Schizophrenia. P L o S Genetics, 10(6), e1004345. https://doi.org/10.1371/journal.pgen.1004345

Scally, A., Dutheil, J. Y., Hillier, L. W., Jordan, G. E., Goodhead, I., Herrero, J., Hobolth, A., Lappalainen, T., Mailund, T., Marques-Bonet, T., McCarthy, S., Montgomery, S. H., Schwalie, P. C., Tang, Y. A., Ward, M. C., Xue, Y., Yngvadottir, B., Alkan, C., Andersen, L. N. ... Durbin, R. (2012). Insights into hominid evolution from the gorilla genome sequence. Nature, 483(7388), 169-75. https://doi.org/10.1038/nature10842

Sjödin, P., Bataillon, T. & Schierup, M. H. (2010). Insertion and deletion processes in recent human history. P L o S One, 5(1), e8650. https://doi.org/10.1371/journal.pone.0008650

Mailund , Pedersen, C. N. S., Bardino, J., Vinter, B. & Karlsen, H. H. (2005). Initial experiences with GeneRecon on MiG. In Proceedings of The 2005 International Conference on Grid Computing and Applications (GCA)

Boni, M. F., Gog, J. R., Andreasen, V. & Christiansen, F. B. (2004). Influenza drift and epidemic size: the race between generating and escaping immunity. Theoretical Population Biology, 65, 179-191.

Ravn, P., Forsberg, R. & Christiansen, F. (2007). Influenza: - menneskets uforudsigelige følgesvend. Aktuel Naturvidenskab, 2007(2), 16-20.

Mailund, T., Munch, K. & Schierup, M. H. (2014). Inferring the Process of Human–Chimpanzee Speciation. In Encyclopedia of Life Sciences Wiley. https://doi.org/10.1002/9780470015902.a0020833.pub2

Wiuf, C. (2003). Inferring population history from geneaological trees. J Math Biol, 46, 241-264. https://doi.org/10.1007/s00285-002-0180-8

Andersen, L. N. (2011). Inferring Population Histories In The IM-model Using Site Pattern Analysis. Poster session presented at SMBE 2011, Kyoto, Japan.

Nielsen, S., Simonsen, S. & Hobolth, A. (2016). Inferring Population Genetic Parameters: Particle Filtering, HMM, Ripley’s K-Function or Runs of Homozygosity? In M. Frith & C. Nørgaard Storm Pedersen (Eds.), WABI 2016: 16th International Workshop (Vol. 9838, pp. 234-245). Springer. Lecture Notes in Computer Science http://link.springer.com/chapter/10.1007/978-3-319-43681-4_19/fulltext.html

Wiuf, C. (2004). Inference on recombination and block structure using unphased data. Genetics, 166, 537-545.

Mollion, M. (2018). Inference on adaptation from population genomics data.

Bataillon, T., Duan, J., Hvilsom, C., Jin, X., Li, Y., Skov, L., Glemin, S., Munch, K., Jiang, T., Qian, Y., Hobolth, A., Wang, J., Mailund, T., Siegismund, H. R. & Schierup, M. H. (2015). Inference of purifying and positive selection in three subspecies of chimpanzees (Pan troglodytes) from exome sequencing. Genome Biology and Evolution, 7(4), 1122-32. https://doi.org/10.1093/gbe/evv058

Displaying results 501 to 550 out of 1111

Revised 05.04.2022 -

Palle Villesen