Publications

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Hobolth, A., Dutheil, J., Hawks, J., Schierup, M. H. & Mailund, T. (2011). Incomplete lineage sorting patterns among human, chimpanzee and orangutan suggest recent orangutan speciation and widespread selection. Genome Research, 21(3), 349-356. https://doi.org/10.1101/gr.114751.110

Feng, S., Bai, M., Rivas-González, I., Li, C., Liu, S., Tong, Y., Yang, H., Chen, G., Xie, D., Sears, K. E., Franco, L. M., Gaitan-Espitia, J. D., Nespolo, R. F., Johnson, W. E., Yang, H., Brandies, P. A., Hogg, C. J., Belov, K., Renfree, M. B. ... Zhang, G. (2022). Incomplete lineage sorting and phenotypic evolution in marsupials. Cell, 185(10), 1646-1660.e18. https://doi.org/10.1016/j.cell.2022.03.034

Wiuf, C. H. & Stumpf, M. (2010). Incomplete and noisy network data as a percolation process. Journal of the Royal Society. Interface, 7(51), 1411-1419.

Zhang, Q., Cai, Z., Lhomme, M., Sahana, G., Lesnik, P., Guerin, M., Fredholm, M. & Karlskov-Mortensen, P. (2020). Inclusion of endophenotypes in a standard GWAS facilitate a detailed mechanistic understanding of genetic elements that control blood lipid levels. Scientific Reports, 10(1), Article 18434. https://doi.org/10.1038/s41598-020-75612-6

Glémin, S., Bataillon, T., Ronfort, J., Mignot, A. & Olivieri, I. (2001). Inbreeding depression in small populations of self-incompatible plants. Genetics, 159(3), 1217-29.

Bataillon, T. & Kirkpatrick, M. (2000). Inbreeding depression due to mildly deleterious mutations in finite populations: size does matter. Genetics Research, 75(1), 75-81.

Maier, R. M., Zhu, Z., Lee, S. H., Trzaskowski, M., Ruderfer, D. M., Stahl, E. A., Ripke, S., Wray, N. R., Yang, J., Visscher, P. M., Robinson, M. R., Forstner, A. J., Mcquillin, A., Trubetskoy, V., Wang, W., Wang, Y., Coleman, J. R. I., Gaspar, H. A., De Leeuw, C. A. ... Zammit, S. (2018). Improving genetic prediction by leveraging genetic correlations among human diseases and traits. Nature Communications, 9(1), Article 989. https://doi.org/10.1038/s41467-017-02769-6

Thomsen, A. H., Villesen, P., Brink, O., Leth, P. M. & Hougen, H. P. (2020). Improved medical treatment could explain a decrease in homicides with a single stab wound. Forensic Science, Medicine, and Pathology, 16(3), 415-422. https://doi.org/10.1007/s12024-020-00246-z

Martins, H. & Villesen, P. (2011). Improved integration time estimation of endogenous retroviruses with phylogenetic data. PLoS One, 6(3), e14745. https://doi.org/10.1371/journal.pone.0014745

Zhang, Q., Privé, F., Vilhjálmsson, B. & Speed, D. (2021). Improved genetic prediction of complex traits from individual-level data or summary statistics. Nature Communications, 12(1), Article 4192. https://doi.org/10.1038/s41467-021-24485-y

Hobolth, A., Uyenoyama, M. K. & Wiuf, C. (2008). Importance sampling for the infinite sites model. Statistical Applications in Genetics and Molecular Biology, 7(1). https://doi.org/10.2202/1544-6115.1400

Feyera, T., Pedersen, T. F., Larsen, U. K., Foldager, L. & Theil, P. K. (2018). Impact of sow energy status during farrowing on farrowing kinetics, frequency of stillborn piglets, and farrowing assistance: Sow energy status and farrowing kinetics. Journal of Animal Science, 96(6), 2320–2331. Article 96. https://doi.org/10.1093/jas/sky141

Castellano, D., Eyre-Walker, A. & Munch, K. (2019). Impact of mutation rate and selection at linked sites on DNA variation across the genomes of humans and other homininae. Genome Biology and Evolution, 12(1), 3550-3561. https://doi.org/10.1093/gbe/evz215

Winters, J. F. M., Foldager, L., Krogh, U., Nørskov, N. & Sørensen, M. T. (2023). Impact of glyphosate residues in sow diets on neonatal piglets: tail kinks, stillborn and diarrhoea. Livestock Science, 269, Article 105172. https://doi.org/10.1016/j.livsci.2023.105172

Liu, X., Trinh, N. T., Wray, N. R., Lupattelli, A., Albiñana, C., Agerbo, E., Vilhjálmsson, B. J., Bergink, V. & Munk-Olsen, T. (2024). Impact of genetic, sociodemographic, and clinical features on antidepressant treatment trajectories in the perinatal period. European Neuropsychopharmacology, 81, 20-27. https://doi.org/10.1016/j.euroneuro.2024.01.010

Foldager, L., Winters, J., Nørskov, N. & Sørensen, M. T. (2021). Impact of feed glyphosate residues on broiler breeder egg production and egg hatchability. Scientific Reports, 11, Article 19290. https://doi.org/10.1038/s41598-021-98962-1

Georgaki, D., Canibe, N., van der Heide, M. E., Foldager, L., Poulsen, C. H., Mejldal, R., Velayudhan, D., Nørgaard, J. V. & Højberg, O. (2026). Impact of 1,2-α-L-fucosidase on pig enteric methane production and growth performance. Animal Microbiome, 8(1), Article 30. https://doi.org/10.1186/s42523-025-00487-9

Dardani, C., Robinson, J. W., Jones, H. J., Rai, D., Stergiakouli, E., Grove, J., Gardner, R., McIntosh, A. M., Havdahl, A., Hemani, G., Davey Smith, G., Richardson, T. G., Gaunt, T. R. & Khandaker, G. M. (2025). Immunological drivers and potential novel drug targets for major psychiatric, neurodevelopmental, and neurodegenerative conditions. Molecular Psychiatry, 30(10), 4487-4496. Article e1004092. https://doi.org/10.1038/s41380-025-03032-x

TRACERx Consortium & Genomics England Consortium (2025). ImmuneLENS characterizes systemic immune dysregulation in aging and cancer. Nature Genetics, 57(3), 694-705. Article 305. https://doi.org/10.1038/s41588-025-02086-5

Mun, T., Bachmann, A., Gupta, V., Stougaard, J. & Andersen, S. U. (2016). Lotus Base: An integrated information portal for the model legume Lotus japonicus. Scientific Reports, 6, Article 39447. https://doi.org/10.1038/srep39447

Nielsen, L. S., Lindholst, C. & Villesen, P. (2016). Illegal drugs and bioinformatics - Classification and stability of amphetamine impurities applied in criminal investigations.

Villesen, P., Murakami, T., Schultz, T. R. & Boomsma, J. J. (2002). Identifying the transition between single and multiple mating of queens in fungus-growing ants. Proceedings of the Royal Society B: Biological Sciences, 269(1500), 1541-1548.

GSRD Consortium & Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium (2022). Identifying the Common Genetic Basis of Antidepressant Response. Biological Psychiatry: Global Open Science, 2(2), 115-126. https://doi.org/10.1016/j.bpsgos.2021.07.008

Als, T. D., Lescai, F., Dahl, H., Demontis, D., Wang, A., Andorsdottir, G., Biskopstø, M., Johansen, O., Grove, J., Nyegaard, M., Bolund, L., Mors, O., Jun, W. & Børglum, A. (2015). Identifying Rare Variation in Cases of Schizophrenia in the Isolated Population of the Faroe Islands using Whole-genome Sequencing. Poster session presented at XXIII World Congress of Psychiatric Genetics, Toronto, Canada.

Refoyo-Martínez, A., da Fonseca, R. R., Halldórsdóttir, K., Árnason, E., Mailund, T. & Racimo, F. (2019). Identifying loci under positive selection in complex population histories. Genome Research, 29(9), 1506-1520. https://doi.org/10.1101/gr.246777.118

Bailey, S. F., Guo, Q. & Bataillon, T. (2018). Identifying Drivers of Parallel Evolution: A Regression Model Approach. Genome Biology and Evolution, 10(10), 2801-2812. https://doi.org/10.1093/gbe/evy210

Qian, Y., Besenbacher, S., Mailund, T. & Schierup, M. H. (2014). Identifying disease associated genes by network propagation. BMC Systems Biology, 8(Suppl 1), S6. https://doi.org/10.1186/1752-0509-8-S1-S6

Privé, F., Arbel, J., Aschard, H. & Vilhjálmsson, B. J. (2022). Identifying and correcting for misspecifications in GWAS summary statistics and polygenic scores. Human Genetics and Genomics Advances, 3(4), Article 100136. https://doi.org/10.1016/j.xhgg.2022.100136

Kongsted, H., Foldager, L. & Sørensen, J. T., (2018). Identifikation af mulighederne for at minimere forekomsten af læsioner hos økologiske svin og frilandssvin (del 2), No. 2018-760-000666, 28 p., Jun 04, 2018.

Mattheisen, M., Grove, J., Als, T. D., Martin, J., Voloudakis, G., Meier, S., Demontis, D., Bendl, J., Walters, R., Carey, C. E., Rosengren, A., Strom, N. I., Hauberg, M. E., Zeng, B., Hoffman, G., Zhang, W., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Agerbo, E. ... Børglum, A. D. (2022). Identification of shared and differentiating genetic architecture for autism spectrum disorder, attention-deficit hyperactivity disorder and case subgroups. Nature Genetics, 54(10), 1470-1478. https://doi.org/10.1038/s41588-022-01171-3

Jørgensen, C. S., Horsdal, H. T., Rajagopal, V. M., Grove, J., Als, T. D., Kamperis, K., Nyegaard, M., Walters, G. B., Eðvarðsson, V. Ö., Stefánsson, H., Nordentoft, M., Hougaard, D. M., Werge, T., Mors, O., Mortensen, P. B., Agerbo, E., Rittig, S., Stefánsson, K., Børglum, A. D. ... Christensen, J. H. (2021). Identification of genetic loci associated with nocturnal enuresis: a genome-wide association study. The Lancet Child and Adolescent Health, 5(3), 201-209. https://doi.org/10.1016/S2352-4642(20)30350-3

Villesen, P., Aagaard, L., Wiuf, C. & Pedersen, F. S. (2004). Identification of endogenous retroviral reading frames in the human genome. Retrovirology, 1(32), 1-13. https://doi.org/10.1186/1742-4690-1-32

Kuderna, L. F. K., Ulirsch, J. C., Rashid, S., Ameen, M., Sundaram, L., Hickey, G., Cox, A. J., Gao, H., Kumar, A., Aguet, F., Christmas, M. J., Clawson, H., Haeussler, M., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A. ... Farh, K. K. H. (2024). Identification of constrained sequence elements across 239 primate genomes. Nature, 625(7996), 735-742. https://doi.org/10.1038/s41586-023-06798-8

Grove, J., Ripke, S., Als, T. D., Mattheisen, M., Walters, R. K., Won, H., Pallesen, J., Agerbo, E., Andreassen, O. A., Anney, R., Awashti, S., Belliveau, R., Bettella, F., Buxbaum, J. D., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Cerrato, F., Chambert, K., Christensen, J. H. ... Børglum, A. D. (2019). Identification of common genetic risk variants for autism spectrum disorder. Nature Genetics, 51(3), 431-444. https://doi.org/10.1038/s41588-019-0344-8

Jensen, T. D., Li, J., Wang, K., Lindebjerg, J., Kølvraa, S., Bolund, L., Jakobsen, A., Bruun-Petersen, G., Li, S. & Crüger, D. G. (2011). Identification of chromosome aberrations in sporadic microsatellite stable and unstable colorectal cancers using array comparative genomic hybridization. Cancer Genetics and Cytogenetics, 204(2), 84-95. https://doi.org/10.1016/j.cancergencyto.2010.08.019

Schierup, M. H., Mable, B. K., Awadalla, P. & Charlesworth, D. (2001). Identification and Characterization of a Polymorphic Receptor Kinase Gene Linked to the Self-Incompatibility Locus of Arabidopsis lyrata. Genetics, 158(387-399), 12259-12254.

Fukai, E., Madsen, L. H., Radutoiu, E. S., Dobrowolska, A., Yost, C. K., Sandal, N. N., Schauser, L. & Stougaard, J. (2006). Identification and characterisation of LORE1 and LORE2, active retrotransposons in model legume Lotus japonicus. Poster session presented at Plant Biotech Denmark Annual meeting 2006, København, Denmark.

Walker, J. A., Jordan, V. E., Storer, J. M., Steely, C. J., Gonzalez-Quiroga, P., Beckstrom, T. O., Rewerts, L. C., St. Romain, C. P., Rockwell, C. E., Rogers, J., Jolly, C. J., Konkel, M. K., The Baboon Genome Analysis Consortium & Batzer, M. A. (2019). Alu insertion polymorphisms shared by Papio baboons and Theropithecus gelada reveal an intertwined common ancestry. Mobile DNA, 10(1), Article 46. https://doi.org/10.1186/s13100-019-0187-y

Staunstrup, N. H., Moldt, B., Mátés, L., Villesen, P., Jakobsen, M., Ivics, Z., Izsvák, Z. & Mikkelsen, J. G. (2009). Hybrid Lentivirus-transposon Vectors With a Random Integration Profile in Human Cells. Molecular Therapy, 17(7), 1205-14. https://doi.org/10.1038/mt.2009.10

Østergaard, S., Andersen, S., Sládecek, T. & Villesen, P. (2019). Hvornår får vi børn? – En historie om fødselsmønstre i et moderne samfund. Aktuel Naturvidenskab, 2019(5), 8-11. https://aktuelnaturvidenskab.dk/find-artikel/nyeste-numre/5-2019/

Jørgensen, F. G., Mailund, T., Schierup, M. H. & Kjærgaard, P. C. (2013). Hvor kommer du fra? En undersøgelse af danskernes genetiske historie. Biofag, 3, 18-20. http://hvorkommerdufra.dk/fileadmin/hvorkommerdufra.dk/Artikel_fra_biofag.pdf

Hobolth, A. (2016). Hvem er bedst? metoder til rangering i sport og videnskab. Aktuel Naturvidenskab, 5, 26-29.

Schild, S.-L. A., Foldager, L., Bonde, M. K., Andersen, H. M.-L. & Pedersen, L. J. (2019). Hut climate impacts piglet survival. In Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science (Vol. 25, pp. 338). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-890-2

Chen, J., Bataillon, T., Glémin, S. & Lascoux, M. (2022). Hunting for Beneficial Mutations: Conditioning on SIFT Scores When Estimating the Distribution of Fitness Effect of New Mutations. Genome Biology and Evolution, 14(1), Article evab151. https://doi.org/10.1093/gbe/evab151

Marquart Løber, I. M., Ward, L. J., Elmsjö, A., Söderberg, C., Villesen, P., Nielsen, K. L. & Green, H. (2026). Human-to-Rat Validation of PMI Biomarkers: A Bidirectional Cross-Species Metabolomics Study Reveals Asymmetric Translation. Analytical Chemistry, 98(20), 14883-14890. https://doi.org/10.1021/acs.analchem.6c00202

Fredslund, J. & Matarić, M. J. (2002). Huey, Dewey, Louie, and GUI – Commanding Robot Formations. In Proceedings of the 2002 IEEE International Conference on Robotics and Automation (ICRA'02) IEEE.

Galtier, N. & Rousselle, M. (2020). How much does Ne vary among species? Genetics, 216(2), 559-572. https://doi.org/10.1534/genetics.120.303622

Cañamero, L. D. & Fredslund, J. (2001). How Does It Feel? Emotional Interaction with a Humanoid LEGO Robot. In K. Dautenhahn (Ed.), Socially Intelligent Agents: The Human in the Loop. Papers from the AAAI 2000 Fall Symposium in Cape Cod, Massachusetts, USA (pp. 23-28). AAAI Press.

Thomsen, A. H., Leth, P. M., Hougen, H. P., Villesen, P. & Brink, O. (2019). Homicide in Denmark 1992–2016. Forensic Science International: Synergy, 1, 275-282. https://doi.org/10.1016/j.fsisyn.2019.07.001

Soraggi, S., Rhodes, J., Altinkaya, I., Tarrant, O., Balloux, F., Fisher, M. C. & Fumagalli, M. (2022). HMMploidy: inference of ploidy levels from short-read sequencing data . Peer Community Journal, 2, Article e60. https://doi.org/10.24072/pcjournal.178

Displaying results 701 to 750 out of 1419

Revised 13.01.2026

Palle Villesen