Publications

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Waltoft, B. L., Pedersen, C. B., Nyegaard, M. & Hobolth, A. (2015). The importance of distinguishing between the odds ratio and the incidence rate ratio in GWAS. B M C Medical Genetics, 16(1), 71. https://doi.org/10.1186/s12881-015-0210-1

Pedersen, C. B., Bybjerg-Grauholm, J., Pedersen, M. G., Grove, J., Agerbo, E., Bækvad-Hansen, M., Poulsen, J. B., Hansen, C. S., McGrath, J. J., Als, T. D., Goldstein, J. I., Neale, B. M., Daly, M. J., Hougaard, D. M., Mors, O., Nordentoft, M., Børglum, A. D., Werge, T. & Mortensen, P. B. (2018). The iPSYCH2012 case-cohort sample: new directions for unravelling genetic and environmental architectures of severe mental disorders. Molecular Psychiatry, 23(1), 6–14. https://doi.org/10.1038/mp.2017.196

Bergeron, L. A., Besenbacher, S., Bakker, J., Zheng, J., Li, P., Pacheco, G., Sinding, M. H. S., Kamilari, M., Gilbert, M. T. P., Schierup, M. H. & Zhang, G. (2021). The germline mutational process in rhesus macaque and its implications for phylogenetic dating. GigaScience, 10(5), [giab029]. https://doi.org/10.1093/gigascience/giab029

Christiansen, F. (1990). The generalized multiplicative model for viability selection at multiple loci. Journal of Mathematical Biology, 29, 99-129.

Hobolth, A. & Wiuf, C. H. (2009). The genealogy, site frequency spectrum and ages of two nested mutant alleles. Theoretical Population Biology, 75(4), 260-265. https://doi.org/10.1016/j.tpb.2009.02.001

Brown, P. E., Christensen, O. F., Clough, H. E., Diggle, P. J., Hart, C. A., Hazel, S., Kemp, R., Leatherbarrow, A. J. H., Moore, A., Sutherst, J., Turner, J., Williams, N. J., Wright, E. J. & French, N. P. (2004). The frequency and spatial distribution of environmental campylobacter spp. Applied Environmental Microbiology, 70, 6501-6511.

Fragata, I., Matuszewski, S., Schmitz, M. A., Bataillon, T., Jensen, J. D. & Bank, C. (2018). The fitness landscape of the codon space across environments. Heredity. https://doi.org/10.1038/s41437-018-0125-7

Feldman, M., Christiansen, F. & Holsinger, K. (1984). The evolution of self-pollination in plants. American Naturalist, 124, 446–453.

Morgan, M. T., Schoen, D. J. & Bataillon, T. (1997). The evolution of self-fertilization in perennials. American Naturalist, 150(5), 618-38. https://doi.org/10.1086/286085

Bach, L. A., Helvik, T. & Christiansen, F. B. (2006). The evolution of n-player cooperation—threshold games and ESS bifurcations. Journal of Theoretical Biology, 238, 426-434.

Clark, A. G., Feldman, M. W. & Christiansen, F. (1981). The estimation of epistasis in components of fitness in experimental populations of Drosophila melanogaster I. A two stage maximum likelihood model. Heredity, 46, 321-346.

Aagaard, J., Foldager, L., Makki, A., Hansen, V. & Müller-Nielsen, K. (2017). The efficacy of psychoeducation on recurrent depression: A randomised trial with a two-year follow-up. Nordic Journal of Psychiatry, 71(3), 223-229. https://doi.org/10.1080/08039488.2016.1266385

de Silva, E., Thorne, T., Ingram, P., Agrafioti, I., Swire, J., Wiuf, C. & Stumpf, MPH. (2006). The effects of incomplete protein interaction data on structural and evolutionary inferences. B M C Biology, 4(39). https://doi.org/10.1186/1741-7007-4-39

Bataillon, T., Mailund, T., Thorlacius, S., Steingrimsson, E., Rafnar, T., Halldorsson, M., Calian, V. & Schierup, M. H. (2006). The effective size of the Icelandic population and the prospects for LD mapping: inference from unphased microsatellite markers. European Journal of Human Genetics, 14, 1044–1053. https://doi.org/10.1038/sj.ejhg.5201669

Christiansen, F. (1989). The effect of population subdivision on multiple loci without selection. In M. W. Feldman (Ed.), Mathematical Evolutionary Theory (pp. 71-85). Princeton University Press.

Bolvig, A. K., Nørskov, N., Hedemann, M. S., Foldager, L., McCarthy-Sinclair, B., Marco, M., Lærke, H. N. & Knudsen, K. E. B. (2017). The effect of antibiotics and diet on enterolactone concentration and metabolome studied by targeted and non-targeted LC-MS metabolomics. Journal of Proteome Research, 16(6), 2135-2150. https://doi.org/10.1021/acs.jproteome.6b00942

Schierup, M. H., Jensen, T. M. & Wiuf, C. (2005). The effect of a single recombination event. Poster session presented at Genomic Studies and the HapMap, Oxford, United Kingdom.

Benito, B. M., Svenning, J-C., Kellberg-Nielsen, T., Riede, F., Gil-Romera, G., Mailund, T., Kjaergaard, P. C. & Sandel, B. S. (2017). The ecological niche and distribution of Neanderthals during the Last Interglacial. Journal of Biogeography, 44(1), 51–61. https://doi.org/10.1111/jbi.12845

Christiansen, F. (1987). The deviation from linkage equilibrium with multiple loci varying in a stepping-stone cline. Journal of Genetics, 66, 45-67.

Kjeldgaard, M., Nissen, P., Thirup, S. & Nyborg, J. (1993). The crystal structure of elongation factor EF-Tu from Thermus aquaticus in the GTP conformation. Structure, 1(1), 35-50.

Rogers, J., Raveendran, M., Alan Harris, R., Mailund, T., Leppälä, K., Athanasiadis, G., Schierup, M. H., Cheng, J., Munch, K., Walker, J. A., Konkel, M. K., Jordan, V., Steely, C. J., Beckstrom, T. O., Bergey, C., Burrell, A., Schrempf, D., Noll, A., Kothe, M. ... Baboon Genome Analysis Consortium (2019). The comparative genomics and complex population history of Papio baboons. Science Advances, 5(1), [6947]. https://doi.org/10.1126/sciadv.aau6947

Wiuf, C. & Hein, J. (2000). The coalescent with gene conversion. Genetics, 155, 451-462.

Schierup, M. H. & Wiuf, C. H. (2010). The coalescent in bacterial populations. In D. A. Robinson, D. Falush & E. J. Feil (Eds.), Bacterial population genetics in infectious disease (pp. 3-19). Wiley-Blackwell.

Nielsen, S. M., de Gier, C., Dimopoulou, C., Gupta, V., Hansen, L. H. & Nørskov-Lauritsen, N. (2015). The capsule biosynthesis locus of Haemophilus influenzae show conspicuous similarity to the corresponding locus in Haemophilus sputorum and may have been recruited from this species by horizontal gene transfer. Microbiology, 161(6), 1182-1188. https://doi.org/10.1099/mic.0.000081

Prüfer, K., Munch, K., Hellmann, I., Akagi, K., Miller, J. R., Walenz, B., Koren, S., Sutton, G., Kodira, C., Winer, R., Knight, J. R., Mullikin, J. C., Meader, S. J., Ponting, C. P., Lunter, G., Higashino, S., Hobolth, A., Dutheil, J., Karakoç, E. ... Pääbo, S. (2012). The bonobo genome compared with the chimpanzee and human genomes. Nature, 486(7404), 527-31. https://doi.org/10.1038/nature11128

Høst, S., Olsen, J., Jansik, B., Thøgersen, L., Jørgensen, P. & Helgaker, T. (2008). The augmented Roothaan-Hall method for optimizing Hartree-Fock and Kohn-Sham density matrices. Journal of Chemical Physics, 129, 124106.

Østergaard, S. D. & Foldager, L. (2011). The association between physical illness and major depressive episode in general practice. Acta Psychiatrica Scandinavica, 123(4), 290-296. https://doi.org/10.1111/j.1600-0447.2010.01668.x

Christensen, L. L., Madsen, B. E., Wikman, F. P., Wiuf, C., Koed, K., Tjønneland, A., Olsen, A. V., Syvänen, A-C., Andersen, C. L. & Orntoft, T. F. (2008). The association between genetic variants in hMLH1 and hMSH2 and the development of sporadic colorectal cancer in the Danish population. B M C Medical Genetics, 9, 52. https://doi.org/10.1186/1471-2350-9-52

Thornton, L. M., Munn-Chernoff, M. A., Baker, J. H., Juréus, A., Parker, R., Henders, A. K., Larsen, J. T., Petersen, L., Watson, H. J., Yilmaz, Z., Kirk, K. M., Gordon, S., Leppä, V. M., Martin, F. C., Whiteman, D. C., Olsen, C. M., Werge, T. M., Pedersen, N. L., Kaye, W. ... Bulik, C. M. (2018). The anorexia nervosa genetics initiative (ANGI): Overview and methods. Contemporary Clinical Trials, 74, 61-69. https://doi.org/10.1016/j.cct.2018.09.015

Wiuf, C. & Hein, J. (1999). The ancestry of a sample of sequences subject to recombination. Genetics, 151, 1217-1228.

Wiuf, C. (2003). The age of a rare mutation. In PJ. Green, NL. Hjort & S. Richardson (Eds.), Highly Structured Stochastic Systems (Vol. 27, pp. 417-422). Oxford University Press. Oxford Statistical Science Series

Christiansen, F. (1988). The Wahlund effect with overlapping generations. American Naturalist, 131, 149-156.

Stevison, L. S., Woerner, A. E., Kidd, J. M., Kelley, J. L., Veeramah, K. R., McManus, K. F., Bustamante, C. D., Hammer, M. F., Wall, J. D., Great Ape Genome Project & Schierup, M. H. (2016). The Time Scale of Recombination Rate Evolution in Great Apes. Molecular Biology and Evolution, 33(4), 928-945. https://doi.org/10.1093/molbev/msv331

Wilton, P. R., Carmi, S. & Hobolth, A. (2015). The SMC' is a highly accurate approximation to the ancestral recombination graph. Genetics (Print), 200(1), 343-355. [1]. http://intl.genetics.org/content/200/1/343.full

Malolepszy, A., Mun, T., Sandal, N., Gupta, V., Dubin, M., Urbanski, D. F., Shah, N., Bachmann, A., Fukai, E., Hirakawa, H., Tabata, S., Nadzieja, M., Markmann, K., Su, J., Umehara, Y., Soyano, T., Miyahara, A., Sato, S., Hayashi, M. ... Andersen, S. U. (2016). The LORE1 insertion mutant resource. The Plant Journal, 88(2), 306-317. https://doi.org/10.1111/tpj.13243

Mailund, T. (2019). The Joys of Hashing: Hash Table Programming with C. Apress. https://doi.org/10.1007/978-1-4842-4066-3

Rafnar, T., Thorlacius, S., Steingrimsson, E., Schierup, M. H., Madsen, J. N., Calian, V., Eldon, B. J., Jonsson, T., Hein, J. & Thorgeirsson, S. S. (2004). The Icelandic Cancer Project--a population-wide approach to studying cancer. Nat Rev Cancer Jun, 4(6), 488-492.

Hartfield, M., Bataillon, T. & Glemin, S. (2017). The Evolutionary Interplay between Adaptation and Self-Fertilization. Trends in Genetics, 33(6), 420-431. https://doi.org/10.1016/j.tig.2017.04.002

Bulik, C. M., Thornton, L. M., Parker, R., Kennedy, H., Baker, J. H., MacDermod, C., Guintivano, J., Cleland, L., Miller, A. L., Harper, L., Larsen, J. T., Yilmaz, Z., Grove, J., Sullivan, P. F., Petersen, L. V., Jordan, J., Kennedy, M. A. & Martin, N. G. (2021). The Eating Disorders Genetics Initiative (EDGI): study protocol. BMC Psychiatry, 21(1), [234]. https://doi.org/10.1186/s12888-021-03212-3

Brodal, G. S., Fagerberg, R., Pedersen, C. N. S., Östlin, A., Orejas, F. (Ed.), Spirakis, P. G. (Ed.) & Leeuwen, J. V. (Ed.) (2001). The Complexity of Constructing Evolutionary Trees Using Experiments. In Lecture Notes In Computer Science; Vol. 2076: Proceedings of the 28th International Colloquium on Automata, Languages and Programming (2076 of Lecture Notes in Computer Science ed., Vol. 2076/2001, pp. 140-151). Springer.

Knudsen, M. & Wiuf, C. H. (2010). The CATH Database. Human Genomics (Online).

Munch, D., Gupta, V., Bachmann, A., Busch, W., Kelly, S., Mun, T. & Andersen, S. U. (2018). The Brassicaceae family displays divergent, shoot-skewed NLR resistance gene expression. Plant Physiology, 176(2), 1598-1609. https://doi.org/10.1104/pp.17.01606

Christensen, L. L., Wikman, F., Wiuf, C., Madsen, B. E., Overvad, K., Tjønnland, A., Koed, K. & Ørntoft, T. F. (2006). The Association of Missense and Silent Mutations with the Development of sporadic and Familial Breast Cancer in the Danish Population. Poster session presented at 19th Meeting of the European Association for Cancer Research, Budapest, Hungary.

Borisov, A. Y., Madsen, L. H., Tsyganov, V. E., Umehara, Y., Voroshilova, V. A., Batagov, A. O., Sandal, N. N., Mortensen, A., Schauser, L., Ellis, N., Tikhonovich, I. A. & Stougaard, J. (2003). The Sym35 gene required for root nodule development in Pisum sativum is an ortholog of Nin from Lotus japonicus. Plant Physiology, 131, 1009-1017.

Mailund & Lyngsø, R. B. (1998). Textual interchange format for high-level Petri nets. In Proceedings of the first workshop on practical use of coloured Petri nets and Design/CPN (pp. 47-64)

Liljas, A., Liljas, L., Piskur, J., Lindblom, G., Nissen, P. & Kjeldgaard, M. (2009). Textbook on Structural Biology. (1 ed.) World Scientific.

Christensen, O. F., Frydenberg, M., Jensen, J. L. & Pedersen, J. G. (2007). Tests and confidence intervals for an extended variance component using the modified likelihood ratio statistic. Scandinavian Journal of Statistics, 34(2), 347-364. https://doi.org/10.1111/j.1467-9469.2006.00520.x

Christensen, O. F., Frydenberg, M., Jensen, J. L. & Pedersen, J. G. (2005). Tests and Confidence Intervals for an Extended Variance Component Using the Modified Likelihood Ratio Statistic.

Pradal, C., Olesen, J. M. & Wiuf, C. H. (2009). Temporal development and collapse of an Arctic plant-pollinator network. B M C Ecology, 9. https://doi.org/10.1186/1472-6785-9-24

Thodberg, K., Foldager, L., Fogsgaard, K. K., Gaillard, C. & Herskin, M. S. (2022). Temperature conditions during commercial transportation of cull sows to slaughter. Computers and Electronics in Agriculture, 192, [106626]. https://doi.org/10.1016/j.compag.2021.106626

Displaying results 101 to 150 out of 1109

Revised 05.04.2022 -

Palle Villesen