Publications

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Foldager, L., Trenel, P., Munksgaard, L. & Thomsen, P. T. (2020). Technical note: Random forests prediction of daily eating time of dairy cows from 3-dimensional accelerometer and radiofrequency identification. Journal of Dairy Science, 103(7), 6271–6275. https://doi.org/10.3168/jds.2019-17613

Fredslund, J. (2000). Teaching a new dog old tricks – the Assumption Architecture. Poster session presented at Learning'00 Workshop, Madrid, Spain.

Frandsen, P., Fontsere, C., Nielsen, S. V., Hanghøj, K., Castejon-Fernandez, N., Lizano, E., Hughes, D., Hernandez-Rodriguez, J., Korneliussen, T. S., Carlsen, F., Siegismund, H. R., Mailund, T., Marques-Bonet, T. & Hvilsom, C. (2020). Targeted conservation genetics of the endangered chimpanzee. Heredity, 125(1-2), 15-27. https://doi.org/10.1038/s41437-020-0313-0

Sall, K., Gessler, F., Foldager, L. & Simonic, M. (2021). Tannins to control Clostridium perfringens in vitro. Poster session presented at Annual Congress of The Danish Microbiological Society, Frederiksberg, Denmark.

Kongsted, H., Foldager, L. & Sørensen, J. T. (2019). Tail bites in free-range based finisher pig systems: prevalence and risk factors. Abstract from 11th symposium of porcine health management, Utrecht, Netherlands.

Luo, X-J., Mattheisen, M., Li, M., Huang, L., Rietschel, M., Børglum, A. D., Als, T. D., van den Oord, E. J., Aberg, K. A., Mors, O., Mortensen, P. B., Luo, Z., Degenhardt, F., Cichon, S., Schulze, T. G., Nöthen, M. M., Su, B., Zhao, Z., Gan, L. ... iPSYCH-GEMS SCZ working group (Jakob Grove, member) (2015). Systematic Integration of Brain eQTL and GWAS Identifies ZNF323 as a Novel Schizophrenia Risk Gene and Suggests Recent Positive Selection Based on Compensatory Advantage on Pulmonary Function. Schizophrenia Bulletin. https://doi.org/10.1093/schbul/sbv017

Penner, R., Andersen, J. E., Wiuf, C. H. & Knudsen, M. (2008). System and method for modelling a molecule with a graph. (Patent No. PA 2008 01009).

Balslev, H., Arge, L. A., Svenning, J-C., Schierup, M. H. & Jensen, C. S. (Eds.) (2011). Symposium on Biodiversity in the Silicon Age - Abstracts. The Royal Danish Academy of Sciences and Letters.

Cavassim, M. I. A., Moeskjær, S., Moslemi, C., Fields, B., Bachmann, A., Vilhjálmsson, B. J., Schierup, M. H., W Young, J. P. & Andersen, S. U. (2020). Symbiosis genes show a unique pattern of introgression and selection within a Rhizobium leguminosarum species complex. Microbial Genomics, 6(4). https://doi.org/10.1099/mgen.0.000351

Gallasch, G. E., Kristensen, L. M. & Mailund (2002). Sweep-Line State Space Exploration for Coloured Petri Nets. In Proceedings of Fourth Workshop on Practical Use of Coloured Petri Nets and the CPN Tools (CPN 2002) (pp. 101-119)

Fredslund, J. & Andersen, E. S. (2005). Superjordnøddernes hemmelighed. Aktuel Naturvidenskab, (6), 12-15.

Hobolth, A. & Jensen, J. L. (2011). Summary statistics for endpoint-conditioned continuous-time Markov chains. Journal of Applied Probability, 48(4), 911-924. https://doi.org/10.1239/jap/1324046009

Hobolth, A. & Jensen, J. L. (2010). Summary statistics for end-point conditioned continuous-time Markov chains. Thiele Centre, Institut for Matematiske Fag, Aarhus Universitet.

Villesen, P. (2001). Summary of "Mating System Evolution, Worker Reproduction and Symbiont Diversity in Attine Ants. In Doctorates and PhDs 2001, Faculty of Science, University of Aarhus (pp. 616-618)

Lasry, C., Guillemot, V., Lechat, P., Menager, H., Vilhjalmsson, B. J. & Aschard, H. (2017). Summary Statistic GWAS Joint Re-Analyses Across 30+Traits. Genetic Epidemiology, 41(7), 652-652.

Dai, N., Foldager, L., Gallego, J. A., Hack, L. M., Ji, Y., Lett, T. A. P., Liu, B., Loken, E. K., Mandelli, L., Mehta, D., Power, R. A., Sprooten, E., Stephens, S. H., Paska, A. V., Yan, J., Zai, C. C., Zai, G., Zhang-James, Y., O'Shea, A. & DeLisi, L. E. (2012). Summaries from the XIX World Congress of Psychiatric Genetics, Washington, DC, September 10-14 2011. American Journal of Medical Genetics. Part B: Neuropsychiatric Genetics, 159B(1), 128-129. https://doi.org/10.1002/ajmg.b.32017

Speed, D. & Balding, D. J. (2019). SumHer better estimates the SNP heritability of complex traits from summary statistics. Nature Genetics, 51(2), 277-284. https://doi.org/10.1038/s41588-018-0279-5

Stumpf, MPH., Wiuf, C. & May, RM. (2005). Subnets of scale-free networks are not scale-free: Sampling properties of networks. PNAS (Proceedings of the National Academy of Sciences of the United States of America), 102, 4221-4224.

Andersen, L. N. (2011). Subexponential loss rate asymptotics for Lévy processes. Mathematical Methods of Operations Research, 73(1), 91-108. https://doi.org/10.1007/s00186-010-0335-0

Bergeron, L. A., Besenbacher, S., Schierup, M. H. & Zhang, G. (2021). Studying mutation rate evolution in primates-a need for systematic comparison of computational pipelines. GigaScience, 10(10), [giab072]. https://doi.org/10.1093/gigascience/giab072

Mikic, N., Poulsen, F. R., Kristoffersen, K. B., Laursen, R. J., Guldberg, T. L., Skjøth-Rasmussen, J., Wong, E. T., Møller, S., Dahlrot, R. H., Sørensen, J. C. H. & Korshøj, A. R. (2021). Study protocol for OptimalTTF-2: enhancing Tumor Treating Fields with skull remodeling surgery for first recurrence glioblastoma: a phase 2, multi-center, randomized, prospective, interventional trial. BMC Cancer, 21(1), [1010]. https://doi.org/10.1186/s12885-021-08709-4

Christiansen, F. (1980). Studies on selection components in natural populations using population samples of mother-offspring combinations. Hereditas, 92, 199-203.

Nyborg, J., Nissen, P., Kjeldgaard, M., Thirup, S., Polekhina, G. & Clark, B. F. (1996). Structure of the ternary complex of EF-Tu: macromolecular mimicry in translation. Trends in Biochemical Sciences, 21(3), 81-2.

Andersen, L. N. & Mandjes, M. (2009). Structural properties of reflected Lévy processes. Queueing Systems, 63(1-4), 301-322. https://doi.org/10.1007/s11134-009-9116-y

Clark, B. F., Kjeldgaard, M., la Cour, T. F., Thirup, S. & Nyborg, J. (1990). Structural determination of the functional sites of E. coli elongation factor Tu. BBA General Subjects, 1050(1-3), 203-8.

Nam, K., Munch, K., Hobolth, A., Y. Dutheil, J., Veeramah, K., Woerner, A., F. Hammer, M., Ape Genome Diversity Project, G., Mailund, T. & H. Schierup, M. (2014). Strong selective sweeps associated with ampliconic regions in great ape X chromosomes. arXiv.

Dutheil, J. Y., Munch, K., Nam, K., Mailund, T. & Schierup, M. H. (2015). Strong Selective Sweeps on the X Chromosome in the Human-Chimpanzee Ancestor Explain Its Low Divergence. P L o S Genetics, 11(8), e1005451. https://doi.org/10.1371/journal.pgen.1005451

Kousholt, A., Ziegel, J., Kiderlen, M. & Jensen, E. B. V. (2017). Stereological estimation of mean particle volume tensors in R3 from vertical sections. In E. B. V. Jensen & M. Kiderlen (Eds.), Tensor Valuations and Their Applications in Stochastic Geometry and Imaging (Vol. 2177, pp. 423-434). Springer. Lecture Notes in Mathematics Vol. 2177

Knudsen, M., Feliu, E., Wiuf, C. H. & Andersen, L. N. (2010). Steady States of Phosphorelays and Two-Component Systems. Poster session presented at The 11th International Conference on Systems Biology, Edinburgh, United Kingdom.

Capion, N., Raundal, P., Foldager, L. & Thomsen, P. T. (2021). Status of claw recordings and claw health in Danish dairy cattle from 2013 to 2017. The Veterinary Journal, 277, [105749]. https://doi.org/10.1016/j.tvjl.2021.105749

Wiuf, C. H. & Andersen, C. L. (Eds.) (2009). Statistics and Informatics in Molecular Cancer Research. (1 ed.) Oxford University Press.

Wiuf, C. H. & Andersen, C. L. (Eds.) (2009). Statistics and Informatics in Molecular Cancer Research. Oxford University Press.

Stumpf, MPH., Ingram, PJ., Nouvel, I. & Wiuf, C. (2005). Statistical model selection methods applied to biological network data. Transactions on Computational Systems Biology, 3, 65-77.

Hansen, AJ., Willerslev, E., Wiuf, C., Mourier, T. & Arctander, P. (2001). Statistical evidence for miscoding lesions in ancient DNA templates. Mol. Biol. Evol., 18, 262-265.

Christensen, O. F., Cassiani, G., Diggle, P. J., Ribeiro, P. J. & Andreotti, G. (2004). Statistical estimation of the relative efficiency of natural attenuation mechanisms in contaminated aquifers. Stochastic environmental research and risk assessment (SERRA), 18, 339-350.

Maag, E., Kulasingam, A., Grove, E. L., Pedersen, K. S., Kristensen, S. D. & Hvas, A. M. (2021). Statistical and machine learning methods for analysis of multiplex protein data from a novel proximity extension assay in patients with ST-elevation myocardial infarction. Scientific Reports, 11(1), [13787]. https://doi.org/10.1038/s41598-021-93162-3

Wiuf, C. & Ratmann, O. (2007). Statistical analysis of biological network data. In P. Linde (Ed.), Symposium i Anvendt Statistik 2007 (pp. 147-156)

Hein, J., Wiuf, C., Møller, M., Knudsen, B. & Wibling, G. (2000). Statistical alignment: computational properties, homology testing and goodness-of-fit. J. Mol. Biol., 302(1), 265-279. https://doi.org/10.1006/jmbi.2000.4061

Tataru, P., Simonsen, M., Bataillon, T. & Hobolth, A. (2016). Statistical Inference in the Wright–Fisher Model Using Allele Frequency Data. Systematic Biology. https://doi.org/10.1093/sysbio/syw056

Christensen, S., Jensen, K., Mailund & Kristensen, L. M. (2001). State space methods for coloured Petri nets. In Proceedings of the 2nd international colloquium on Petri net technologies for modelling communication based systems (pp. 14-15)

Arunapuram, P., Edvardsson, I., Golden, M., Anderson, J. W. J., Novák, A., Sükösd, Z. & Hein, J. (2013). StatAlign 2.0: Combining statistical alignment with RNA secondary structure prediction. Bioinformatics, 29(5), 654-655. https://doi.org/10.1093/bioinformatics/btt025

Braïda, B., Thøgersen, L., Wu, W. & Hiberty, P. C. (2002). Stability, Metastability, and Unstability of Three-Electron-Bonded Radical Anions. A Model ab Initio Theoretical Study. Journal of the American Chemical Society, 124, 11781-11790.

Nielsen, L. S., Villesen, P. & Lindholst, C. (2016). Stability of cocaine impurity profiles during 12 months of storage. Forensic Science International, 264, 56-62. https://doi.org/10.1016/j.forsciint.2016.03.012

Nielsen, L. S., Villesen, P. & Lindholst, C. (2015). Stability of cocaine alkaloids and residual solvents applied in drug profiling.

Nielsen, L. S., Villesen, P. & Lindholst, C. (2018). Stability of amphetamine impurity profiles during 12 months of storage. Forensic Science International, 290, 129-136.

Mailund, T. (2004). SplitDist—Calculating Split-Distances for Sets of Trees.

Athanasiadis, G., Jorgensen, F. G., Cheng, J. Y., Kjaergaard, P. C., Schierup, M. H. & Mailund, T. (2016). Spitting for Science: Danish High School Students Commit to a Large-Scale Self-Reported Genetic Study. P L o S One, 11(8), [e0161822]. https://doi.org/10.1371/journal.pone.0161822

Sanggaard, K. W., Bechsgaard, J. S., Fang, X., Duan, J., Dyrlund, T. F., Gupta, V., Jiang, X., Cheng, L., Fan, D., Feng, Y., Han, L., Huang, Z., Wu, Z., Liao, L., Settepani, V., Thøgersen, I. B., Vanthournout, B., Wang, T., Zhu, Y. ... Wang, J. (2014). Spider genomes provide insight into composition and evolution of venom and silk. Nature Communications, 5, [3765]. https://doi.org/10.1038/ncomms4765

Brodal, G. S., Fagerberg, R., Mailund, T., Pedersen, C. N. S. & Phillips, D. (2003). Speeding Up Neighbour-Joining Tree Construction.

Lorenzen, E. D., Nogués-Bravo, D., Orlando, L., Weinstock, J., Binladen, J., Marske, K. A., Ugan, A., Borregaard, M. K., Gilbert, M. T. P., Nielsen, R., Ho, S. Y. W., Goebel, T., Graf, K. E., Byers, D., Stenderup, J., Rasmussen, M., Campos, P., Leonard, J. A., Koepfli, K-P. ... Willerslev, E. (2011). Species-specific responses of Late Quaternary megafauna to climate and humans. Nature, 479(7373), 359-64. https://doi.org/10.1038/nature10574

Displaying results 151 to 200 out of 1109

Revised 05.04.2022 -

Palle Villesen