Publications

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Bergeron, L. A., Besenbacher, S., Schierup, M. H. & Zhang, G. (2021). Studying mutation rate evolution in primates-a need for systematic comparison of computational pipelines. GigaScience, 10(10), Article giab072. https://doi.org/10.1093/gigascience/giab072

Christiansen, F. (1980). Studies on selection components in natural populations using population samples of mother-offspring combinations. Hereditas, 92, 199-203.

Nyborg, J., Nissen, P., Kjeldgaard, M., Thirup, S., Polekhina, G. & Clark, B. F. (1996). Structure of the ternary complex of EF-Tu: macromolecular mimicry in translation. Trends in Biochemical Sciences, 21(3), 81-2.

Andersen, L. N. & Mandjes, M. (2009). Structural properties of reflected Lévy processes. Queueing Systems, 63(1-4), 301-322. https://doi.org/10.1007/s11134-009-9116-y

Clark, B. F., Kjeldgaard, M., la Cour, T. F., Thirup, S. & Nyborg, J. (1990). Structural determination of the functional sites of E. coli elongation factor Tu. BBA General Subjects, 1050(1-3), 203-8.

Dutheil, J. Y., Munch, K., Nam, K., Mailund, T. & Schierup, M. H. (2015). Strong Selective Sweeps on the X Chromosome in the Human-Chimpanzee Ancestor Explain Its Low Divergence. PLoS Genetics, 11(8), e1005451. https://doi.org/10.1371/journal.pgen.1005451

Nam, K., Munch, K., Hobolth, A., Y. Dutheil, J., Veeramah, K., Woerner, A., F. Hammer, M., Ape Genome Diversity Project, G., Mailund, T. & H. Schierup, M. (2014). Strong selective sweeps associated with ampliconic regions in great ape X chromosomes. ArXiv.

Winters, J. F. M., Kobek-Kjeldager, C., Foldager, L., Tecles, F. & Pedersen, L. J. (2023). Stress responses in pigs postweaning: Effect of heavier hybrid and weaning intact litters. Applied Animal Behaviour Science, 269, Article 106106. https://doi.org/10.1016/j.applanim.2023.106106

Kousholt, A., Ziegel, J., Kiderlen, M. & Jensen, E. B. V. (2017). Stereological estimation of mean particle volume tensors in R3 from vertical sections. In E. B. V. Jensen & M. Kiderlen (Eds.), Tensor Valuations and Their Applications in Stochastic Geometry and Imaging (Vol. 2177, pp. 423-434). Springer.

Knudsen, M., Feliu, E., Wiuf, C. H. & Andersen, L. N. (2010). Steady States of Phosphorelays and Two-Component Systems. Poster session presented at The 11th International Conference on Systems Biology, Edinburgh, United Kingdom.

Capion, N., Raundal, P., Foldager, L. & Thomsen, P. T. (2021). Status of claw recordings and claw health in Danish dairy cattle from 2013 to 2017. The Veterinary Journal, 277, Article 105749. https://doi.org/10.1016/j.tvjl.2021.105749

Wiuf, C. H. & Andersen, C. L. (Eds.) (2009). Statistics and Informatics in Molecular Cancer Research. (1 ed.) Oxford University Press.

Wiuf, C. H. & Andersen, C. L. (Eds.) (2009). Statistics and Informatics in Molecular Cancer Research. Oxford University Press.

Stumpf, MPH., Ingram, PJ., Nouvel, I. & Wiuf, C. (2005). Statistical model selection methods applied to biological network data. Transactions on Computational Systems Biology, 3, 65-77.

Kjeldbjerg Lassen, J., Bradshaw, R., Villesen, P. & Francese, S. (2023). Statistical Modelling Investigation of MALDI-MSI-Based Approaches for Document Examination. Molecules, 28(13), Article 5207. https://doi.org/10.3390/molecules28135207

Tataru, P., Simonsen, M., Bataillon, T. & Hobolth, A. (2017). Statistical Inference in the Wright–Fisher Model Using Allele Frequency Data. Systematic Biology, 66(1), e30-e46. https://doi.org/10.1093/sysbio/syw056

Hansen, AJ., Willerslev, E., Wiuf, C., Mourier, T. & Arctander, P. (2001). Statistical evidence for miscoding lesions in ancient DNA templates. Mol. Biol. Evol., 18, 262-265.

Christensen, O. F., Cassiani, G., Diggle, P. J., Ribeiro, P. J. & Andreotti, G. (2004). Statistical estimation of the relative efficiency of natural attenuation mechanisms in contaminated aquifers. Stochastic environmental research and risk assessment (SERRA), 18, 339-350.

Maag, E., Kulasingam, A., Grove, E. L., Pedersen, K. S., Kristensen, S. D. & Hvas, A. M. (2021). Statistical and machine learning methods for analysis of multiplex protein data from a novel proximity extension assay in patients with ST-elevation myocardial infarction. Scientific Reports, 11(1), Article 13787. https://doi.org/10.1038/s41598-021-93162-3

Weiner, D. J., Ling, E., Erdin, S., Tai, D. J. C., Yadav, R., Grove, J., Fu, J. M., Nadig, A., Carey, C. E., Baya, N., Bybjerg-Grauholm, J., iPSYCH Consortium, ASD Working Group of the Psychiatric Genomics Consortium, ADHD Working Group of the Psychiatric Genomics Consortium, Berretta, S., Macosko, E. Z., Sebat, J., O'Connor, L. J., Hougaard, D. M. ... Robinson, E. B. (2022). Statistical and functional convergence of common and rare genetic influences on autism at chromosome 16p. Nature Genetics, 54(11), 1630-1639. https://doi.org/10.1038/s41588-022-01203-y

Wiuf, C. & Ratmann, O. (2007). Statistical analysis of biological network data. In P. Linde (Ed.), Symposium i Anvendt Statistik 2007 (pp. 147-156)

Hein, J., Wiuf, C., Møller, M., Knudsen, B. & Wibling, G. (2000). Statistical alignment: computational properties, homology testing and goodness-of-fit. J. Mol. Biol., 302(1), 265-279. https://doi.org/10.1006/jmbi.2000.4061

Christensen, S., Jensen, K., Mailund & Kristensen, L. M. (2001). State space methods for coloured Petri nets. In Proceedings of the 2nd international colloquium on Petri net technologies for modelling communication based systems (pp. 14-15)

Arunapuram, P., Edvardsson, I., Golden, M., Anderson, J. W. J., Novák, A., Sükösd, Z. & Hein, J. (2013). StatAlign 2.0: Combining statistical alignment with RNA secondary structure prediction. Bioinformatics, 29(5), 654-655. https://doi.org/10.1093/bioinformatics/btt025

Nielsen, L. S., Villesen, P. & Lindholst, C. (2016). Stability of cocaine impurity profiles during 12 months of storage. Forensic Science International, 264, 56-62. https://doi.org/10.1016/j.forsciint.2016.03.012

Nielsen, L. S., Villesen, P. & Lindholst, C. (2015). Stability of cocaine alkaloids and residual solvents applied in drug profiling.

Nielsen, L. S., Villesen, P. & Lindholst, C. (2018). Stability of amphetamine impurity profiles during 12 months of storage. Forensic Science International, 290, 129-136. https://doi.org/10.1016/j.forsciint.2018.06.039

Braïda, B., Thøgersen, L., Wu, W. & Hiberty, P. C. (2002). Stability, Metastability, and Unstability of Three-Electron-Bonded Radical Anions. A Model ab Initio Theoretical Study. Journal of the American Chemical Society, 124, 11781-11790.

Mailund, T. (2004). SplitDist—Calculating Split-Distances for Sets of Trees.

Athanasiadis, G., Jorgensen, F. G., Cheng, J. Y., Kjaergaard, P. C., Schierup, M. H. & Mailund, T. (2016). Spitting for Science: Danish High School Students Commit to a Large-Scale Self-Reported Genetic Study. PLoS One, 11(8), Article e0161822. https://doi.org/10.1371/journal.pone.0161822

Sanggaard, K. W., Bechsgaard, J. S., Fang, X., Duan, J., Dyrlund, T. F., Gupta, V., Jiang, X., Cheng, L., Fan, D., Feng, Y., Han, L., Huang, Z., Wu, Z., Liao, L., Settepani, V., Thøgersen, I. B., Vanthournout, B., Wang, T., Zhu, Y. ... Wang, J. (2014). Spider genomes provide insight into composition and evolution of venom and silk. Nature Communications, 5, Article 3765. https://doi.org/10.1038/ncomms4765

Brodal, G. S., Fagerberg, R., Mailund, T., Pedersen, C. N. S. & Phillips, D. (2003). Speeding Up Neighbour-Joining Tree Construction.

Lorenzen, E. D., Nogués-Bravo, D., Orlando, L., Weinstock, J., Binladen, J., Marske, K. A., Ugan, A., Borregaard, M. K., Gilbert, M. T. P., Nielsen, R., Ho, S. Y. W., Goebel, T., Graf, K. E., Byers, D., Stenderup, J., Rasmussen, M., Campos, P., Leonard, J. A., Koepfli, K.-P. ... Willerslev, E. (2011). Species-specific responses of Late Quaternary megafauna to climate and humans. Nature, 479(7373), 359-64. https://doi.org/10.1038/nature10574

Sokač, M., Kjær, A., Dyrskjøt, L., Haibe-Kains, B., Jwl Aerts, H. & Birkbak, N. J. (2023). Spatial transformation of multi-omics data unlocks novel insights into cancer biology. eLife, 12, Article RP87133. https://doi.org/10.7554/eLife.87133

Wiuf, C., Laidlaw, Z. & Stumpf, MPH. (2003). Some notes on the combinatorial properties of haplotype tagging. Math. Biosci., 185, 205-216.

Brodal, G. S., Lyngsø, R. B., Östlin, A. & Pedersen, C. N. S. (2002). Solving the String Statistics Problem in Time O(n log n). In P. Widmayer, S. Eidenbenz, F. Triguero, R. Morales, R. Conejo & M. Hennessy (Eds.), Automata, Languages and Programming: 29th International Colloquium, ICALP 2002 Málaga, Spain, July 8–13, 2002 Proceedings (pp. 728-739). Springer. https://doi.org/10.1007/3-540-45465-9_62

Holmstrup, M., Sørensen, J. G., Schmidt, I. K., Nielsen, P. L., Mason, S., Tietema, A., Smith, A. R., Bataillon, T., Beier, C. & Ehlers, B. K. (2013). Soil microarthropods are only weakly impacted after 13 years of repeated drought treatment in wet and dry heathland soils. Soil Biology & Biochemistry, 66, 110-118. https://doi.org/10.1016/j.soilbio.2013.06.023

Warrier, V., Toro, R., Won, H., Leblond, C. S., Cliquet, F., Delorme, R., De Witte, W., Bralten, J., Chakrabarti, B., Børglum, A. D., Grove, J., Poelmans, G., Hinds, D. A., Bourgeron, T. & Baron-Cohen, S. (2019). Social and non-social autism symptoms and trait domains are genetically dissociable. Communications Biology, 2(1), Article 328. https://doi.org/10.1038/s42003-019-0558-4

Li, S., Li, R., Li, H., Lu, J., Li, Y., Bolund, L., Schierup, M. H. & Wang, J. (2013). SOAPindel: efficient identiﬁcation of indels from short paired reads. Genome Research, 23(1), 195-200. https://doi.org/10.1101/gr.132480.111

Sørensen, F. J., Andersen, C. L. & Wiuf, C. (2007). SNPTools: A software tool for visualization and analysis of microarray data. Bioinformatics, 23(12), 1550-52. https://doi.org/10.1093/bioinformatics/btm122

Nielsen, J. & Mailund, T. (2008). SNPFile - A software library and file format for large scale association mapping and population genetics studies. BMC Bioinformatics, 9(526), 1-11. https://doi.org/10.1186/1471-2105-9-526

Lindgreen, S., Krogh, A. & Pedersen, J. S. (2014). SNPest: a probabilistic graphical model for estimating genotypes. BMC Research Notes, 7, 698. https://doi.org/10.1186/1756-0500-7-698

Li, S., Ma, L., Li, H., Vang, S., Hu, Y., Bolund, L. & Wang, J. (2007). Snap: An Integrated SNP Annotation Platform. Nucleic Acids Research, 35, D707-D710. https://doi.org/10.1093/nar/gkl969

Mørup, N., Stakaitis, R., Golubickaite, I., Riera, M., Dalgaard, M. D., Schierup, M. H., Jørgensen, N., Daugaard, G., Juul, A. & Almstrup, K. (2021). Small RNAs in Seminal Plasma as Novel Biomarkers for Germ Cell Tumors. Cancers, 13(10), Article 2346. https://doi.org/10.3390/cancers13102346

Okholm, K. R., Nooteboom, S. W., Vinther, J. N., Lamberti, V., Dey, S., Andersen, E. S., Zijlstra, P. & Sutherland, D. S. (2024). Single-Molecule Multivalent Interactions Revealed by Plasmon-Enhanced Fluorescence. ACS Nano, 18(52), 35429-35442. https://doi.org/10.1021/acsnano.4c12600

Frank, M., Fechete, L. I., Tedeschi, F., Nadzieja, M., Nørgaard, M. M. M., Montiel, J., Andersen, K. R., Schierup, M. H., Reid, D. & Andersen, S. U. (2023). Single-cell analysis identifies genes facilitating rhizobium infection in Lotus japonicus. Nature Communications, 14(1), Article 7171. https://doi.org/10.1038/s41467-023-42911-1

Hobolth, A. & Stone, E. (2009). Simulation from endpoint-conditioned, continuous-time Markov chains on a finite state space, with applications to molecular evolution. Annals of Applied Statistics, 3(3), 1204-1231. https://doi.org/10.1214/09-AOAS247

Posada, D. & Wiuf, C. (2003). Simulating haplotype blocks in the human genome. Bioinformatics, 19(2), 289-290.

Christiansen, F. (1990). Simplified models for viability selection at multiple loci. Theoretical Population Biology, 37, 39-54.

Madsen, T., Hobolth, A., Jensen, J. L. & Pedersen, J. S. (2017). Significance evaluation in factor graphs. BMC Bioinformatics , 18(1), 199. Article 199. https://doi.org/10.1186/s12859-017-1614-z

Displaying results 201 to 250 out of 1417

Revised 13.01.2026

Palle Villesen