Publications

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Christiansen, F. (1988). Frequency-dependence and competition. Philosophical Transactions of the Royal Society B: Biological Sciences, 319, 587-600.

Malmos, K., Dong, M., Besenbacher, F., Daasbjerg, K. & Pedersen, S. U. (2007). Formation with the use of Electrostatic Repulsion of Covalent Attached Thin Layer on Glassy Carbon Surface. Paper presented at Electrochemical Science and Technology, Aarhus, Denmark.

Thøgersen, L. & Nissen, P. (2012). Flexible P-type ATPases interacting with the membrane. Current Opinion in Structural Biology, 22(4), 491-499. https://doi.org/10.1016/j.sbi.2012.05.009

Anciaux, Y. E. (2019). Fitness Lanscape properties across environments: How to infer Fisher's Geometric Model properties from empirical fitness landscapes across environements . Poster session presented at Nordita meeting, Stockholm, Sweden.

Hargreaves, A., Bailey, S. & Laird, R. (2015). Fitness declines towards range limits and local adaptation to climate affect dispersal evolution during climate‐induced range shifts. Journal of Evolutionary Biology, 28(8), 1489-1501. https://doi.org/10.1111/jeb.12669

Lee, Y. L., Takada, H., Moreira, G. C. M., Karim, L., GplusE Consortium, Bosse, M., Bouwman, A., Mullaart, E., Coppieters, W., Georges, M., Druet, T. & Charlier, C. (2020). Fine resolution CNV catalogue from deeply sequenced cattle genomes. In Book of Abstracts of the 71st Annual Meeting of the European Federation of Animal Science (Vol. 26, pp. 188). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-900-8

Privé, F., Zhu, Z. & Vilhjalmsson, B. J. (2021). Finding hidden treasures in summary statistics from genome-wide association studies. Nature Genetics, 53(4), 431-432. https://doi.org/10.1038/s41588-021-00824-z

Fredslund, J. (2005). Feelix. In H. Domaine (Ed.), Robotics: Cool Science Lerner Publications.

Fredslund, J. (2004). Feelix. In R. F. Bridgman (Ed.), Robot: Eyewitness Dorling Kindersley.

Giagnoni, G., Lassen, J., Lund, P., Foldager, L., Johansen, M. & Weisbjerg, M. R. (2024). Feed intake in housed dairy cows: validation of a three-dimensional camera−based feed intake measurement system. ANIMAL, 18(6), Article 101178. https://doi.org/10.1016/j.animal.2024.101178

Lashkari, S., Weisbjerg, M. R., Foldager, L. & Børsting, C. F. (2024). Fat supplement for dairy cows during early lactation – potentials, challenges, and risks – a meta-analysis. Journal of Applied Animal Research, 52(1), Article 2323625. https://doi.org/10.1080/09712119.2024.2323625

Lashkari, S., Weisbjerg, M. R., Foldager, L. & Børsting, C. F. (2022). Fat supplement for dairy cow diets during early lactation – meta analysis. In Book of Abstracts of the 73rd Annual Meeting of the European Federation of Animal Science (pp. 668-668). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-937-4

Penner, R., Knudsen, M., Wiuf, C. H. & Andersen, J. E. (2010). Fatgraph Models of Proteins. Communications on Pure and Applied Mathematics, 63(10), 1249-1297. https://doi.org/10.1002/cpa.20340

Fredsted, T. & Villesen, P. (2004). Fast, reliable sexing of prosimian DNA. American Journal of Primatology, 64, 345-350.

Sendrowski, J. & Bataillon, T. (2024). FastDFE: Fast and Flexible Inference of the Distribution of Fitness Effects. Molecular Biology and Evolution, 41(5), Article msae070. https://doi.org/10.1093/molbev/msae070

Christiansen, C., Mailund, T., Pedersen, C. N. S., Randers, M. & Stissing, M. (2006). Fast Calculation of the Quartet Distance Between Trees of Arbitrary Degrees. Algorithms for Molecular Biology, 1(16).

Villesen, P. & Fredsted, T. (2006). Fast and non-invasive PCR sexing of primates: apes, Old World monkeys, New World monkeys and Strepsirrhines. BMC Ecology, 6(8).

Cheng, J. Y., Mailund, T. & Nielsen, R. (2017). Fast admixture analysis and population tree estimation for SNP and NGS data. Bioinformatics (Online), 33(14), 2148–2155. https://doi.org/10.1093/bioinformatics/btx098

Hanghøj, K., Seguin, A., Schubert, M., Madsen, T., Pedersen, J. S., Willerslev, E. & Orlando, L. (2016). Fast, accurate and automatic ancient nucleosome and methylation maps with epiPALEOMIX. Molecular Biology and Evolution, 33(12), 3284-3298. https://doi.org/10.1093/molbev/msw184

Foldager, L. (2025). FAIR data and Open Science: some insights from a work package in the PIGWEB project. In P. Linde (Ed.), Symposium i Anvendt Statistik 2025 (pp. 49-54). Økonomisk Institut og Klinisk Institut, Syddansk Universitet & Symposium i Anvendt Statistik. http://www.statistiksymposium.dk/Symposium%202025%20hele%20bogen%20(10%20MB).pdf

Eskildsen, S. J., Hansen, C. A., Kallemose, T., Curtis, D. J., Wessel, I. & Poulsen, I. (2024). Factors Associated With Time to Decannulation in Patients With Tracheostomy Following Severe Traumatic Brain Injury. Respiratory Care, 69(5), 566-574. https://doi.org/10.4187/respcare.11376

Thuillet, A.-C., Bataillon, T., Sourdille, P. & David, J. L. (2004). Factors affecting polymorphism at microsatellite loci in bread wheat [ Triticum aestivum (L.) Thell]: effects of mutation processes and physical distance from the centromere. Theoretical and Applied Genetics, 108(2), 368-77. https://doi.org/10.1007/s00122-003-1443-5

Jimenez Mena, B., Verrier, E. & Hospital, F. (2014). Facing the estimation of effective population size based on molecular markers: comparison of estimators.. Abstract from World Congress on Genetics Applied to Livestock Production, Vancouvers, Canada. https://asas.org/docs/default-source/wcgalp-posters/440_paper_9030_manuscript_372_0.pdf?sfvrsn=2

Villesen, P. (2007). FaBox: an online toolbox for FASTA sequences. Molecular Ecology Resources. https://doi.org/10.1111/j.1471-8286.2007.01821.x

Nam, K., Munch, K., Hobolth, A., Dutheil, J. Y., Veeramah, K. R., Woerner, A. E., Hammer, M. F., Mailund, T., Schierup, M. H. & Great Ape Genome Diversity Project (2015). Extreme selective sweeps independently targeted the X chromosomes of the great apes. Proceedings of the National Academy of Sciences (PNAS), 112(20). https://doi.org/10.1073/pnas.1419306112

Abascal, F., Corvelo, A., Cruz, F., Villanueva-Cañas, J. L., Vlasova, A., Marcet-Houben, M., Martínez-Cruz, B., Cheng, J. Y., Prieto, P., Quesada, V., Quilez, J., Li, G., García, F., Rubio-Camarillo, M., Frias, L., Ribeca, P., Capella-Gutiérrez, S., Rodríguez, J. M., Câmara, F. ... Godoy, J. A. (2016). Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx. Genome Biology (Online), 17(1), 251. Article 251. https://doi.org/10.1186/s13059-016-1090-1

Shah, N., Wakabayashi, T., Kawamura, Y., Skovbjerg, C. K., Wang, M.-Z., Mustamin, Y., Isomura, Y., Gupta, V., Jin, H., Mun, T., Sandal, N., Azuma, F., Fukai, E., Seren, Ü., Kusakabe, S., Kikuchi, Y., Nitanda, S., Kumaki, T., Hashiguchi, M. ... Andersen, S. U. (2020). Extreme genetic signatures of local adaptation during Lotus japonicus colonization of Japan. Nature Communications, 11(1), Article 253. https://doi.org/10.1038/s41467-019-14213-y

Skov, L., Coll Macià, M., Lucotte, E. A., Cavassim, M. I. A., Castellano, D., Schierup, M. H. & Munch, K. (2023). Extraordinary selection on the human X chromosome associated with archaic admixture. Cell Genomics, 3(3), Article 100274. https://doi.org/10.1016/j.xgen.2023.100274

Hvilsom, C., Qian, Y., Bataillon, T., Li, Y., Mailund, T., Sallé, B., Carlsen, F., Li, R., Zheng, H., Jiang, T., Jiang, H., Jin, X., Munch, K., Hobolth, A., Siegismund, H. R., Wang, J. & Schierup, M. H. (2012). Extensive X-linked adaptive evolution in central chimpanzees. Proceedings of the National Academy of Sciences (PNAS). https://doi.org/10.1073/pnas.1106877109

Garcia-Erill, G., Wang, X., Rasmussen, MS., Quinn, L., Khan, A., Bertola, LD., Santander, CG., Balboa, RF., Ogutu, JO., Pečnerová, P., Hanghøj, K., Kuja, J., Nursyifa, C., Masembe, C., Muwanika, V., Bibi, F., Moltke, I., Siegismund, HR., Albrechtsen, A. & Heller, R. (2024). Extensive Population Structure Highlights an Apparent Paradox of Stasis in the Impala (Aepyceros melampus). Molecular Ecology, 33(22), Article e17539. https://doi.org/10.1111/mec.17539

McFarland, K. N., Tiwari, A., Hashem, V., Zhang, L., Zeng, D., Vincent, J., Arredondo, M. J., Johnson, K. L., Gan, S. R., Yabe, I., Skov, L., Rasmussen, A. & Ashizawa, T. (2024). Extended haplotype with rs41524547-G defines the ancestral origin of SCA10. Human Molecular Genetics, 33(18), 1567-1574. https://doi.org/10.1093/hmg/ddae092

Branscheid, A., Sieh, D., Pant, B. D., May, P., Devers, E. A., Elkrog, A., Schauser, L., Scheible, W.-R. & Krajinski, F. (2010). Expression pattern suggests a role of MiR399 in the regulation of the cellular response to local Pi increase during arbuscular mycorrhizal symbiosis. Molecular plant-microbe interactions, 23(7), 915-26. https://doi.org/10.1094/MPMI-23-7-0915

Boggs, N. A., Dwyer, K. G., Shah, P., McCulloch, A. A., Bechsgaard, J., Schierup, M. H., Nasrallah, M. E. & Nasrallah, J. B. (2009). Expression of distinct self-incompatibility specificities in Arabidopsis thaliana. Genetics, 182(4), 1313-21. https://doi.org/10.1534/genetics.109.102442

Weiss, S., Lamy, P., Rusan, M., Nørgaard, M., Ulhøi, B. P., Knudsen, M., Kassentoft, C. G., Farajzadeh, L., Jensen, J. B., Pedersen, J. S., Borre, M. & Sørensen, K. D. (2024). Exploring the tumor genomic landscape of aggressive prostate cancer by whole-genome sequencing of tissue or liquid biopsies. International Journal of Cancer, 155(2), 298-313. https://doi.org/10.1002/ijc.34949

Andersen, L., Christensen, D. S., Kjær, A., Knudsen, M., Andersen, A. K., Laursen, M. B., Ahrenfeldt, J., Laursen, B. E. & Birkbak, N. J. (2024). Exploring the molecular landscape of cancer of unknown primary: A comparative analysis with other metastatic cancers. Molecular Oncology, 18(10), 2393-2406. https://doi.org/10.1002/1878-0261.13664

Ahrenfeldt, J., Carstensen, S., Eriksen, I. M. H. & Birkbak, N. J. (2024). Exploring the impact of body mass index on tumor biology and cancer development. Journal of Cancer Research and Clinical Oncology, 150(7), Article 372. https://doi.org/10.1007/s00432-024-05890-4

Breinbjerg, A., Jørgensen, C. S., Walters, G. B., Grove, J., Als, T. D., Kamperis, K., Stéfansdóttir, L., Thirstrup, J. P., Borg, B., Albiñana, C., Vilhjálmsson, B. J., Eðvarðsson, V. Ö., Stefánsson, H., Mortensen, P. B., Agerbo, E., Werge, T., Børglum, A., Demontis, D., Stefánsson, K. ... Christensen, J. H. (2024). Exploring the Genetic Risk of Childhood Daytime Urinary Incontinence: A Genome-Wide Association Study. The Journal of Urology, 212(6), 851-861. https://doi.org/10.1097/JU.0000000000004187

Andersen, L., Kisistók, J., Henriksen, T. V., Bramsen, J. B., Reinert, T., Øgaard, N., Mattesen, T. B., Birkbak, N. J. & Andersen, C. L. (2024). Exploring the biology of ctDNA release in colorectal cancer. European Journal of Cancer, 207, Article 114186. https://doi.org/10.1016/j.ejca.2024.114186

Salavati, M. & GplusE Consortium (2017). Exploratory classification of multiparous dairy cows based on fertility related phenotypes. In Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science (pp. 402-402). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-859-9

Billington, J., Gallasch, G. E., Kristensen, L. M. & Mailund (2004). Exploiting Equivalence Reduction and the Sweep-Line Method for Detecting Terminal States. I E E E Transactions on Systems, Man and Cybernetics, Part A: Systems & Humans, 34(1), 23-37.

Leppälä, K. (2016). EXPLICIT LOWER BOUNDS FOR LINEAR FORMS. Mathematics of Computation, 85(302), 2995-3008. https://doi.org/10.1090/mcom/3078

Rousing, T., Rothmann Holm, J., Krogh, M. A., Østergaard, S. & GplusE Consortium (2020). Expert-based development of a generic HACCP-based risk management system to prevent critical negative energy balance in dairy herds. Preventive Veterinary Medicine, 175, Article 104849. https://doi.org/10.1016/j.prevetmed.2019.104849

Chen, G., Kobek-Kjeldager, C., Jensen, L. D., Kristensen, J. K., Kaiser, M., Thodberg, K., Zhang, G., Rong, L., Herskin, M. S. & Foldager, L. (2024). Experimental study on temperature difference between the interior and exterior of the vehicle transporting weaner pigs. Biosystems Engineering, 247, 119-131. https://doi.org/10.1016/j.biosystemseng.2024.09.001

Mailund, T., Pedersen, C. N. S., Bardino, J., Vinter, B. & Karlsen, H. (2007). Experiences with GeneRecon on MiG. Future Generation Computer Systems - The International Journal of eScience, 23, 580-586. https://doi.org/10.1016/j.future.2006.09.003

Castagnini, A., Foldager, L. & Bertelsen, A. (2013). Excess mortality of acute and transient psychotic disorders: comparison with bipolar affective disorder and schizophrenia. Acta Psychiatrica Scandinavica, 128(5), 370-375. https://doi.org/10.1111/acps.12077

Knudsen, M., Feliu, E. & Wiuf, C. H. (2012). Exact Analysis of Intrinsic Qualitative Features of Phosphorelays using Mathematical Models. Journal of Theoretical Biology, 300, 7-18. https://doi.org/10.1016/j.jtbi.2012.01.007

Anderson, J. WJ., Tataru, P. C., Stains, J., Hein, J. & Lyngsø, R. (2012). Evolving stochastic context-free grammars for RNA secondary structure prediction. BMC Bioinformatics, 13(78). https://doi.org/10.1186/1471-2105-13-78

Finster, K., Wang, T., Borchsenius, F. & Christiansen, F. B. (Eds.) (2016). Evolutionsbiologiske milepæle. (1 ed.) Aarhus Universitetsforlag.

Bergeron, L. A., Besenbacher, S., Zheng, J., Li, P., Bertelsen, M. F., Quintard, B., Hoffman, J. I., Li, Z., St. Leger, J., Shao, C., Stiller, J., Gilbert, M. T. P., Schierup, M. H. & Zhang, G. (2023). Evolution of the germline mutation rate across vertebrates. Nature, 615(7951), 285-291. https://doi.org/10.1038/s41586-023-05752-y

Einer-Jensen, K., Ahrens, P., Forsberg, R. & Lorenzen, N. (2004). Evolution of the fish rhabdovirus viral haemorrhagic septicaemia virus. Journal of General Virology, 85(5), 1167-1179.

Displaying results 851 to 900 out of 1372

Revised 21.08.2024

Palle Villesen