Publications

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Sendrowski, J. & Bataillon, T. (2024). FastDFE: Fast and Flexible Inference of the Distribution of Fitness Effects. Molecular Biology and Evolution, 41(5), Article msae070. https://doi.org/10.1093/molbev/msae070

Lashkari, S., Weisbjerg, M. R., Foldager, L. & Børsting, C. F. (2024). Fat supplement for dairy cows during early lactation – potentials, challenges, and risks – a meta-analysis. Journal of Applied Animal Research, 52(1), Article 2323625. https://doi.org/10.1080/09712119.2024.2323625

Giagnoni, G., Lassen, J., Lund, P., Foldager, L., Johansen, M. & Weisbjerg, M. R. (2024). Feed intake in housed dairy cows: validation of a three-dimensional camera−based feed intake measurement system. Animal, 18(6), Article 101178. https://doi.org/10.1016/j.animal.2024.101178

Dybdahl Krebs, M., Georgii Hellberg, K. L., Lundberg, M., Appadurai, V., Ohlsson, H., Pedersen, E., Steinbach, J., Matthews, J., Border, R., LaBianca, S., Calle, X., Meijsen, J. J., Ingason, A., Buil, A., Vilhjálmsson, B. J., Flint, J., Bacanu, S. A., Cai, N., Dahl, A. ... iPSYCH Study Consortium (2024). Genetic liability estimated from large-scale family data improves genetic prediction, risk score profiling, and gene mapping for major depression. American Journal of Human Genetics, 111(11), 2494-2509. https://doi.org/10.1016/j.ajhg.2024.09.009

23andMe Research Team (2024). Genome-wide association study identifies 30 obsessive-compulsive disorder associated loci. https://doi.org/10.1101/2024.03.13.24304161

Ma, J. (2024). Genomic Responses to Evolution of Sociality in Stegodyphus Spiders. [PhD dissertation, Aarhus University]. Aarhus Universitet.

Fechete, L. I., Larking, A. C., Heslop, A., Hannaford, R., Anderson, C. B., Hong, W., Prakash, S., Mace, W., Alikhani, S., Hofmann, R. W., Tausen, M., Schierup, M. H., Andersen, S. U. & Griffiths, A. G. (2024). Harnessing cold adaptation for postglacial colonisation: Galactinol synthase expression and raffinose accumulation in a polyploid and its progenitors. Plant, Cell & Environment, 47(10), 4014-4030. https://doi.org/10.1111/pce.15009

Kuderna, L. F. K., Ulirsch, J. C., Rashid, S., Ameen, M., Sundaram, L., Hickey, G., Cox, A. J., Gao, H., Kumar, A., Aguet, F., Christmas, M. J., Clawson, H., Haeussler, M., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A. ... Farh, K. K. H. (2024). Identification of constrained sequence elements across 239 primate genomes. Nature, 625(7996), 735-742. https://doi.org/10.1038/s41586-023-06798-8

Liu, X., Trinh, N. T., Wray, N. R., Lupattelli, A., Albiñana, C., Agerbo, E., Vilhjálmsson, B. J., Bergink, V. & Munk-Olsen, T. (2024). Impact of genetic, sociodemographic, and clinical features on antidepressant treatment trajectories in the perinatal period. European Neuropsychopharmacology, 81, 20-27. https://doi.org/10.1016/j.euroneuro.2024.01.010

Dam, M., Centanni, M., Friberg, L. E., Centanni, D., Karlsson, M. O., Stensig Lynggaard, L., Johannsdottir, I. M., Wik, H. S., Malmros, J., Vaitkeviciene, G. E., Griskevicius, L., Hallböök, H., Jónsson, Ó. G., Overgaard, U., Schmiegelow, K., Hansen, S. N., Heyman, M. & Albertsen, B. K. (2024). Increase in peg-asparaginase clearance as a predictor for inactivation in patients with acute lymphoblastic leukemia. Leukemia, 38(4), 712-719. https://doi.org/10.1038/s41375-024-02153-6

Foldager, L., Thorup, V. M., Pastell, M., Frandsen, M., Jensen, B. B. & Krogh, M. A. (2024). IntelliRAS - some results from a project on precision fish farming in recirculation aquaculture systems. In Book of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (pp. 284-284). Article Session 14; Theatre 11 Wageningen Academic Publishers.

Papini, N. M., Presseller, E., Bulik, C. M., Holde, K., Larsen, J. T., Thornton, L. M., Albiñana, C., Vilhjálmsson, B. J., Mortensen, P. B., Yilmaz, Z. & Petersen, L. V. (2024). Interplay of polygenic liability with birth-related, somatic, and psychosocial factors in anorexia nervosa risk: a nationwide study. Psychological Medicine, 54(9), 2073-2086. https://doi.org/10.1017/S0033291724000175

Kalkbrenner, A. E., Zheng, C., Yu, J., Jenson, T. E., Kuhlwein, T., Ladd-Acosta, C., Grove, J. & Schendel, D. (2024). Method for Testing Etiologic Heterogeneity Among Non-Competing Diagnoses, Applied to Impact of Perinatal Exposures on Autism and Attention Deficit Hyperactivity Disorder. Epidemiology, 35(5), 689-700. Article 1760. https://doi.org/10.1097/EDE.0000000000001760

Hobor, S., Al Bakir, M., Hiley, C. T., Skrzypski, M., Frankell, A. M., Bakker, B., Watkins, T. B. K., Markovets, A., Dry, J. R., Brown, A. P., van der Aart, J., van den Bos, H., Spierings, D., Oukrif, D., Novelli, M., Chakrabarti, T., Rabinowitz, A. H., Ait Hassou, L., Litière, S. ... TRACERx Consortium (2024). Mixed responses to targeted therapy driven by chromosomal instability through p53 dysfunction and genome doubling. Nature Communications, 15(1), Article 4871. https://doi.org/10.1038/s41467-024-47606-9

Hobolth, A., Rivas-González, I., Bladt, M. & Futschik, A. (2024). Phase-type distributions in mathematical population genetics: An emerging framework. Theoretical Population Biology, 157, 14-32. https://doi.org/10.1016/j.tpb.2024.03.001

Kresge, H. A., Blostein, F., Goleva, S., Albiñana, C., Revez, J. A., Wray, N. R., Vilhjálmsson, B. J., Zhu, Z., McGrath, J. J. & Davis, L. K. (2024). Phenomewide Association Study of Health Outcomes Associated With the Genetic Correlates of 25 Hydroxyvitamin D Concentration and Vitamin D Binding Protein Concentration. Twin Research and Human Genetics, 27(2), 69-79. https://doi.org/10.1017/thg.2024.19

iPSYCH Consortium (2024). Phenotypic and ancestry-related assortative mating in autism. Molecular Autism, 15(1), 27. Article 27. https://doi.org/10.1186/s13229-024-00605-5

Mundy, J., Hall, A. S. M., Steinbach, J., Albinaña, C., Agerbo, E., Als, T. D., Thapar, A., McGrath, J. J., Vilhjálmsson, B. J., Nordentoft, M., Werge, T., Børglum, A., Mortensen, P. B. & Musliner, K. L. (2024). Polygenic liabilities and treatment trajectories in early-onset depression: a Danish register-based study. Psychological Medicine, 54(14), 3828-3837. https://doi.org/10.1017/S0033291724002186

Jefsen, O. H., Holde, K., McGrath, J. J., Rajagopal, V. M., Albiñana, C., Vilhjálmsson, B. J., Grove, J., Agerbo, E., Yilmaz, Z., Plana-Ripoll, O., Munk-Olsen, T., Demontis, D., Børglum, A., Mors, O., Bulik, C. M., Mortensen, P. B. & Petersen, L. V. (2024). Polygenic risk of mental disorders and subject-specific school grades. Biological Psychiatry, 96(3), 222-229. https://doi.org/10.1016/j.biopsych.2023.11.020

Ghouse, J., Ahlberg, G., Rand, S. A., Olesen, M. S., Vilhjalmsson, B., Stender, S. & Bundgaard, H. (2024). Potential Influence of Risk Factor Control on the Association Between Lipoprotein(a) and Atherosclerotic Cardiovascular Disease. Arteriosclerosis, Thrombosis, and Vascular Biology, 44(6), 1455-1457. https://doi.org/10.1161/ATVBAHA.124.320990

Bang Jensen, B., Thorup, V. M., Foldager, L., Nielsen, K. V., Frandsen, M., Pastell, M. & Krogh, M. A. (2024). Precision fish farming in recirculated aquaculture systems - from theory to implementation. Poster session presented at 17th International Symposium on Veterinary Epidemiology and Economics, Sydney, New South Wales, Australia. https://isvee2024-c10000.eorganiser.com.au/data/clients/1/791/submissions/177854/abstract.pdf

Foldager, L., Thorup, V. M., Pastell, M., Jensen, B. B. & Krogh, M. A. (2024). Prediction of mortality in land-based recirculating aquaculture system (RAS) trout farms. In P. Linde (Ed.), Symposium i Anvendt Statistik 2024 (pp. 17-24). Økonomisk Institut, Københavns Universitet & Symposium i Anvendt Statistik. http://www.statistiksymposium.dk/Symposium 2024 WEB.pdf

Thorup, V. M., Foldager, L., Pastell, M., Frandsen, M., Jensen, B. B. & Krogh, M. A. (2024). Prediction of mortality in recirculation aquaculture systems. Poster session presented at AQUA Conference 2025, Copenhagen, Denmark.

TRACERx Consortium (2024). Representation of genomic intratumor heterogeneity in multi-region non-small cell lung cancer patient-derived xenograft models. Nature Communications, 15(1), Article 4653. https://doi.org/10.1038/s41467-024-47547-3

Dam, M., Lynggaard, L. S., Jónsson, Ó. G., Saulyte Trakymiene, S., Palk, K., Jarvis, K., Andrés-Jensen, L., Tuckuviene, R. & Albertsen, B. K. (2024). Sequelae and post-thrombotic syndrome after venous thromboembolism in acute lymphoblastic leukemia survivors treated on the NOPHO ALL2008 protocol. Pediatric Blood and Cancer, 71(6), Article e30937. https://doi.org/10.1002/pbc.30937

Okholm, K. R., Nooteboom, S. W., Vinther, J. N., Lamberti, V., Dey, S., Andersen, E. S., Zijlstra, P. & Sutherland, D. S. (2024). Single-Molecule Multivalent Interactions Revealed by Plasmon-Enhanced Fluorescence. ACS Nano, 18(52), 35429-35442. https://doi.org/10.1021/acsnano.4c12600

Vilhjálmsson, B. J. (2024). Towards fair and clinically relevant polygenic predictions. Trends in Genetics, 40(5), 379-380. https://doi.org/10.1016/j.tig.2024.04.002

Rivas-González, I., Schierup, M. H., Wakeley, J. & Hobolth, A. (2024). Trails: Tree reconstruction of ancestry using incomplete lineage sorting. PLoS Genetics, 20(2), Article e1010836. https://doi.org/10.1371/journal.pgen.1010836

Ottosson, F., Russo, F., Abrahamsson, A., MacSween, N., Courraud, J., Skogstrand, K., Melander, O., Ericson, U., Orho-Melander, M., Cohen, A. S., Grove, J., Mortensen, P. B., Hougaard, D. M. & Ernst, M. (2024). Unraveling the metabolomic architecture of autism in a large Danish population-based cohort. BMC Medicine, 22(1), Article 302. https://doi.org/10.1186/s12916-024-03516-7

Kazemi Naeini, M., Akbarzadeh, M., Kazemi, I., Speed, D. & Hosseini, S. M. (2024). Using the Bayesian variational spike and slab model in a genome-wide association study for finding associated loci with bipolar disorder. Annals of Human Genetics, 88(3), 212-246. https://doi.org/10.1111/ahg.12538

Kobek-Kjeldager, C., Jensen, L. D., Foldager, L., Kaiser, M., Thodberg, K. & Herskin, M. S. (2024). Validation of behavioural sampling techniques for 20-25 kg pigs during transport. Livestock Science, 280, Article 105411. https://doi.org/10.1016/j.livsci.2024.105411

Kim, S. W., Lee, H., Song, D. Y., Lee, G. H., Ji, J., Park, J. W., Han, J. H., Lee, J. W., Byun, H. J., Son, J. H., Kim, Y. R., Lee, Y., Kim, J., Jung, A., Lee, J., Kim, E., Kim, S. H., Lee, J. H., Satterstrom, F. K. ... An, J. Y. (2024). Whole genome sequencing analysis identifies sex differences of familial pattern contributing to phenotypic diversity in autism. Genome Medicine, 16(1), Article 114. https://doi.org/10.1186/s13073-024-01385-6

Coutant, M. P., Malmkvist, J., Tallet, C., Williams, C., Kaiser, M., Foldager, L. & Herskin, M. S. (2023). Administration of procaine-based local anaesthetic prior to surgical castration influences post-operative behaviours of piglets. Applied Animal Behaviour Science, 258, Article 105813. https://doi.org/10.1016/j.applanim.2022.105813

Kuderna, L. F. K., Gao, H., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., Bergman, J., Rousselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A. ... Bonet, T. M. (2023). A global catalog of whole-genome diversity from 233 primate species. Science, 380(6648), 906-913. https://doi.org/10.1126/science.abn7829

Kisistók, J., Christensen, D. S., Rasmussen, M. H., Duval, L., Aggerholm-Pedersen, N., Luczak, A. A., Sorensen, B. S., Jakobsen, M. R., Oellegaard, T. H. & Birkbak, N. J. (2023). Analysis of circulating tumor DNA during checkpoint inhibition in metastatic melanoma using a tumor-agnostic panel. Melanoma Research, 33(5), 364-374. https://doi.org/10.1097/CMR.0000000000000903

Rivas-González, I. (2023). Ancestral multi-species population genomics. [PhD dissertation, Aarhus University]. Aarhus Universitet.

Yuan, C., Tang, L., Lopdell, T., Petrov, V. A., Oget-Ebrad, C., Moreira, G. C. M., Duarte, J. L. G., Sartelet, A., Cheng, Z., Salavati, M., Wathes, D. C., Crowe, M. A., GplusE Consortium, Coppieters, W., Littlejohn, M., Charlier, C., Druet, T., Georges, M. & Takeda, H. (2023). An organism-wide ATAC-seq peak catalog for the bovine and its use to identify regulatory variants. Genome Research, 33(10), 1848-1864. https://doi.org/10.1101/gr.277947.123

Ng, K. W., Boumelha, J., Enfield, K. S. S., Almagro, J., Cha, H., Pich, O., Karasaki, T., Moore, D. A., Salgado, R., Sivakumar, M., Young, G., Molina-Arcas, M., de Carné Trécesson, S., Anastasiou, P., Fendler, A., Au, L., Shepherd, S. T. C., Martínez-Ruiz, C., Puttick, C. ... CAPTURE Consortium (2023). Antibodies against endogenous retroviruses promote lung cancer immunotherapy. Nature, 616(7957), 563-573. https://doi.org/10.1038/s41586-023-05771-9

Wurtz, K. E., Tahamtani, F. M., Foldager, L., Thodberg, K. & Riber, A. B. (2023). Associations of range use with individual behaviour, clinical welfare indicators, fear response and gastrointestinal characteristics of two laying hen hybrids. Applied Animal Behaviour Science, 265, Article 105978. https://doi.org/10.1016/j.applanim.2023.105978

ADHD Working Group of the Psychiatric Genomics Consortium (2023). Author Correction: Genome-wide analyses of ADHD identify 27 risk loci, refine the genetic architecture and implicate several cognitive domains. Nature Genetics, 55(4), 730. https://doi.org/10.1038/s41588-023-01350-w

Kofod Petersen, A., Staun Larsen, L. & Villesen, P. (2023). Automated use of 3D data in forensic odontology identification. Abstract from PhD dag, Aarhus, Denmark. https://phd.health.au.dk/fileadmin/phd.health.au.dk/Health_NY_filliste/About_us/Events/PhD_Day_2023/Abstract_book_PhD_Day_2023.pdf

Kofod Petersen, A., Forgie, A. H., Bindslev, D. A., Villesen, P. & Staun Larsen, L. (2023). Automatic tissue removal from 3D dental photoscans. Abstract from Trienial I.O.F.O.S. Congres of Forensic Odonto-Stomatology, Dubrovnik, Croatia. https://iofos.eu/wp-content/uploads/2023/07/IOFOS.-Book-of-abstracts.pdf

Nielsen, S. V., Vaughn, A. H., Leppälä, K., Landis, M. J., Mailund, T. & Nielsen, R. (2023). Bayesian inference of admixture graphs on Native American and Arctic populations. PLoS Genetics, 19(2), Article e1010410. https://doi.org/10.1371/journal.pgen.1010410

Al-Sawaf, O., Weiss, J., Skrzypski, M., Lam, J. M., Karasaki, T., Zambrana, F., Kidd, A. C., Frankell, A. M., Watkins, T. B. K., Martínez-Ruiz, C., Puttick, C., Black, J. R. M., Huebner, A., Bakir, M. A., Collins, S., Veeriah, S., Magno, N., Naceur-Lombardelli, C., Prymas, P. ... TRACERx Consortium (2023). Body composition and lung cancer-associated cachexia in TRACERx. Nature Medicine, 29(4), 846-858. https://doi.org/10.1038/s41591-023-02232-8

Bjerg, J. J., Lustermans, J. J. M., Marshall, I. P. G., Mueller, A. J., Brokjær, S., Thorup, C. A., Tataru, P., Schmid, M., Wagner, M., Nielsen, L. P. & Schramm, A. (2023). Cable bacteria with electric connection to oxygen attract flocks of diverse bacteria. Nature Communications, 14(1), Article 1614. https://doi.org/10.1038/s41467-023-37272-8

Lucotte, E. A., Guðmundsdóttir, V. B., Jensen, J. M., Skov, L., Macià, M. C., Almstrup, K., Schierup, M. H., Helgason, A. & Stefansson, K. (2023). Characterizing the evolution and phenotypic impact of ampliconic Y chromosome regions. Nature Communications, 14(1), Article 3990. https://doi.org/10.1038/s41467-023-39644-6

Rasmussen, A. M., Okholm, T. L. H., Knudsen, M., Vang, S., Dyrskjøt, L., Hansen, T. B. & Pedersen, J. S. (2023). Circular stable intronic RNAs possess distinct biological features and are deregulated in bladder cancer. NAR Cancer, 5(3), Article zcad041. https://doi.org/10.1093/narcan/zcad041

Zhang, B. L., Chen, W., Wang, Z., Pang, W., Luo, M. T., Wang, S., Shao, Y., He, W. Q., Deng, Y., Zhou, L., Chen, J., Yang, M. M., Wu, Y., Wang, L., Fernández-Bellon, H., Molloy, S., Meunier, H., Wanert, F., Kuderna, L. ... Wu, D. D. (2023). Comparative genomics reveals the hybrid origin of a macaque group. Science Advances, 9(22), Article eadd3580. https://doi.org/10.1126/sciadv.add3580

Sigurdsson, A. I., Louloudis, I., Banasik, K., Westergaard, D., Winther, O., Lund, O., Ostrowski, S. R., Erikstrup, C., Pedersen, O. B. V., Nyegaard, M., Brunak, S., Vilhjálmsson, B. J., Rasmussen, S. & DBDS Genomic Consortium (2023). Deep integrative models for large-scale human genomics. Nucleic Acids Research, 51(12), E67. Article e67. https://doi.org/10.1093/nar/gkad373

Zhang, C., Reid, K., Sands, A. F., Fraimout, A., Schierup, M. H. & Merilä, J. (2023). De Novo Mutation Rates in Sticklebacks. Molecular Biology and Evolution, 40(9), Article msad192. https://doi.org/10.1093/molbev/msad192

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Revised 13.01.2026

Palle Villesen