Coutant, M. P., Malmkvist, J., Foldager, L. & Herskin, M. S. (2023). Relationship among indicators of pain and stress in response to piglet surgical castration: an exploratory analysis. Journal of Veterinary Behavior, 67, 20-32. https://doi.org/10.1016/j.jveb.2023.07.001

Chatwin, H., Holde, K., Yilmaz, Z., Larsen, J. T., Albiñana, C., Vilhjálmsson, B. J., Mortensen, P. B., Thornton, L. M., Bulik, C. M. & Petersen, L. V. (2023). Risk factors for anorexia nervosa: A population-based investigation of sex differences in polygenic risk and early life exposures. International Journal of Eating Disorders, 56(9), 1703-1716. https://doi.org/10.1002/eat.23997

Poulsgaard, G. A., Sørensen, S. G., Juul, R. I., Nielsen, M. M. & Pedersen, J. S. (2023). Sequence dependencies and mutation rates of localized mutational processes in cancer. Genome Medicine, 15(1), Article 63. https://doi.org/10.1186/s13073-023-01217-z

Frank, M., Fechete, L. I., Tedeschi, F., Nadzieja, M., Nørgaard, M. M. M., Montiel, J., Andersen, K. R., Schierup, M. H., Reid, D. & Andersen, S. U. (2023). Single-cell analysis identifies genes facilitating rhizobium infection in Lotus japonicus. Nature Communications, 14(1), Article 7171. https://doi.org/10.1038/s41467-023-42911-1

Sokač, M., Kjær, A., Dyrskjøt, L., Haibe-Kains, B., Jwl Aerts, H. & Birkbak, N. J. (2023). Spatial transformation of multi-omics data unlocks novel insights into cancer biology. eLife, 12, Article RP87133. https://doi.org/10.7554/eLife.87133

Kjeldbjerg Lassen, J., Bradshaw, R., Villesen, P. & Francese, S. (2023). Statistical Modelling Investigation of MALDI-MSI-Based Approaches for Document Examination. Molecules, 28(13), Article 5207. https://doi.org/10.3390/molecules28135207

Winters, J. F. M., Kobek-Kjeldager, C., Foldager, L., Tecles, F. & Pedersen, L. J. (2023). Stress responses in pigs postweaning: Effect of heavier hybrid and weaning intact litters. Applied Animal Behaviour Science, 269, Article 106106. https://doi.org/10.1016/j.applanim.2023.106106

Borbye-Lorenzen, N., Zhu, Z., Agerbo, E., Albiñana, C., Benros, M. E., Bian, B., Børglum, A. D., Bulik, C. M., Debost, J.-C. P. G., Grove, J., Hougaard, D. M., McRae, A. F., Mors, O., Mortensen, P. B., Musliner, K. L., Nordentoft, M., Petersen, L. V., Privé, F., Sidorenko, J. ... McGrath, J. J. (2023). The correlates of neonatal complement component 3 and 4 protein concentrations with a focus on psychiatric and autoimmune disorders. Cell Genomics, 3(12), 100457. Article 100457. https://doi.org/10.1016/j.xgen.2023.100457

Frankell, A. M., Dietzen, M., Al Bakir, M., Lim, E. L., Karasaki, T., Ward, S., Veeriah, S., Colliver, E., Huebner, A., Bunkum, A., Hill, M. S., Grigoriadis, K., Moore, D. A., Black, J. R. M., Liu, W. K., Thol, K., Pich, O., Watkins, T. B. K., Naceur-Lombardelli, C. ... TRACERx Consortium (2023). The evolution of lung cancer and impact of subclonal selection in TRACERx. Nature, 616(7957), 525-533. https://doi.org/10.1038/s41586-023-05783-5

Vodolazs'ka, D., Feyera, T., Foldager, L. & Lauridsen, C. (2023). The influence of supplementary feeding during suckling and later weaning on growth performance, incidences of post-weaning diarrhoea and immunity of piglets. Livestock Science, 276, Article 105321. https://doi.org/10.1016/j.livsci.2023.105321

Gao, H., Hamp, T., Ede, J., Schraiber, J. G., McRae, J., Singer-Berk, M., Yang, Y., Dietrich, A. S. D., Fiziev, P. P., Kuderna, L. F. K., Sundaram, L., Wu, Y., Adhikari, A., Field, Y., Chen, C., Batzoglou, S., Aguet, F., Lemire, G., Reimers, R. ... Farh, K. K. H. (2023). The landscape of tolerated genetic variation in humans and primates. Science (New York, N.Y.), 380(6648), Article abn8197. https://doi.org/10.1126/science.abn8197

Murat, F., Mbengue, N., Winge, S. B., Trefzer, T., Leushkin, E., Sepp, M., Cardoso-Moreira, M., Schmidt, J., Schneider, C., Mößinger, K., Brüning, T., Lamanna, F., Riera Belles, M., Conrad, C., Kondova, I., Bontrop, R., Behr, R., Khaitovich, P., Pääbo, S. ... Kaessmann, H. (2023). The molecular evolution of spermatogenesis across mammals. Nature, 613(7943), 308-316. https://doi.org/10.1038/s41586-022-05547-7

Christensen, D. S. & Birkbak, N. J. (2023). Therapy drives genomic evolution in metastatic cancer. OncoTarget, 14(1), 216-218. https://doi.org/10.18632/oncotarget.28379

Ahrenfeldt, J., Christensen, D. S., Østergaard, A. B., Kisistók, J., Sokač, M. & Birkbak, N. J. (2023). The ratio of adaptive to innate immune cells differs between genders and associates with improved prognosis and response to immunotherapy. PLOS ONE, 18(2 ), Article e0281375. https://doi.org/10.1371/journal.pone.0281375

Abbosh, C., Frankell, A. M., Harrison, T., Kisistok, J., Garnett, A., Johnson, L., Veeriah, S., Moreau, M., Chesh, A., Chaunzwa, T. L., Weiss, J., Schroeder, M. R., Ward, S., Grigoriadis, K., Shahpurwalla, A., Litchfield, K., Puttick, C., Biswas, D., Karasaki, T. ... TRACERx Consortium (2023). Tracking early lung cancer metastatic dissemination in TRACERx using ctDNA. Nature, 616(7957), 553-562. https://doi.org/10.1038/s41586-023-05776-4

Chen, Y., Atashi, H., Mota, R. R., Grelet, C., Vanderick, S., Hu, H., GplusE Consortium & Gengler, N. (2023). Validating genomic prediction for nitrogen efficiency index and its composition traits of Holstein cows in early lactation. Journal of Animal Breeding and Genetics (Online), 140(6), 695-706. https://doi.org/10.1111/jbg.12819

Lauterbur, M. E., Munch, K. & Enard, D. (2023). Versatile Detection of Diverse Selective Sweeps with Flex-Sweep. Molecular Biology and Evolution, 40(6), Article msad139. https://doi.org/10.1093/molbev/msad139

Heinz, J. L., Swagemakers, S. M. A., von Hofsten, J., Helleberg, M., Thomsen, M. M., De Keukeleere, K., de Boer, J. H., Ilginis, T., Verjans, G. M. G. M., van Hagen, P. M., van der Spek, P. J. & Mogensen, T. H. (2023). Whole exome sequencing of patients with varicella-zoster virus and herpes simplex virus induced acute retinal necrosis reveals rare disease-associated genetic variants. Frontiers in Molecular Neuroscience, 16, Article 1253040. https://doi.org/10.3389/fnmol.2023.1253040

Bergman, J., Pedersen, R., Lundgren, E. J., Lemoine, R. T., Monsarrat, S., Pearce, E. A., Schierup, M. H. & Svenning, J. C. (2023). Worldwide Late Pleistocene and Early Holocene population declines in extant megafauna are associated with Homo sapiens expansion rather than climate change. Nature Communications, 14(1), Article 7679. https://doi.org/10.1038/s41467-023-43426-5

Pedersen, E. M., Agerbo, E., Plana-Ripoll, O., Grove, J., Dreier, J. W., Musliner, K. L., Bækvad-Hansen, M., Athanasiadis, G., Schork, A., Bybjerg-Grauholm, J., Hougaard, D. M., Werge, T., Nordentoft, M., Mors, O., Dalsgaard, S., Christensen, J., Børglum, A. D., Mortensen, P. B., McGrath, J. J. ... Vilhjálmsson, B. J. (2022). Accounting for age of onset and family history improves power in genome-wide association studies. American Journal of Human Genetics, 109(3), 417-432. https://doi.org/10.1016/j.ajhg.2022.01.009

Bethune, J., Kleppe, A. & Besenbacher, S. (2022). A method to build extended sequence context models of point mutations and indels. Nature Communications, 13(1), Article 7884. https://doi.org/10.1038/s41467-022-35596-5

Antaki, D., Guevara, J., Maihofer, A. X., Klein, M., Gujral, M., Grove, J., Carey, C. E., Hong, O., Arranz, M. J., Hervas, A., Corsello, C., Vaux, K. K., Muotri, A. R., Iakoucheva, L. M., Courchesne, E., Pierce, K., Gleeson, J. G., Robinson, E. B., Nievergelt, C. M. & Sebat, J. (2022). A phenotypic spectrum of autism is attributable to the combined effects of rare variants, polygenic risk and sex. Nature Genetics, 54(9), 1284-1292. https://doi.org/10.1038/s41588-022-01064-5

Wang, T., Nielsen, K. L., Frisch, K., Lassen, J. K., Nielsen, C. B., Andersen, C. U., Villesen, P., Andreasen, M. F., Hasselstrøm, J. B. & Johannsen, M. (2022). A Retrospective Metabolomics Analysis of Gamma-Hydroxybutyrate in Humans: New Potential Markers and Changes in Metabolism Related to GHB Consumption. Frontiers in Pharmacology, 13, Article 816376. https://doi.org/10.3389/fphar.2022.816376

Yengo, L., Vedantam, S., Marouli, E., Sidorenko, J., Bartell, E., Sakaue, S., Graff, M., Eliasen, A. U., Jiang, Y., Raghavan, S., Miao, J., Arias, J. D., Graham, S. E., Mukamel, R. E., Spracklen, C. N., Yin, X., Chen, S.-H., Ferreira, T., Highland, H. H. ... Understanding Society Scientific Group (2022). A saturated map of common genetic variants associated with human height. Nature, 610(7933), 704–712. https://doi.org/10.1038/s41586-022-05275-y

Thomsen, A. H., Leth, P. M., Hougen, H. P. & Villesen, P. (2022). Asphyxia homicides in Denmark 1992-2016. International Journal of Legal Medicine, 136(6), 1773-1780. https://doi.org/10.1007/s00414-022-02787-0

DBDS Genetic Consortium & GO Consortium (2022). Author Correction: Rare SLC13A1 variants associate with intervertebral disc disorder highlighting role of sulfate in disc pathology (Nature Communications, (2022), 13, 1, (634), 10.1038/s41467-022-28167-1). Nature Communications, 13(1), Article 2419. https://doi.org/10.1038/s41467-022-30129-6

Thomsen, A. H., Leth, P. M., Hougen, H. P. & Villesen, P. (2022). Blunt force homicides in Denmark 1992-2016. Journal of Forensic Sciences, 67(6), 2343-2350. https://doi.org/10.1111/1556-4029.15118

Franceschini, S., Grelet, C., Leblois, J., Gengler, N., Soyeurt, H. & GplusE Consortium (2022). Can unsupervised learning methods applied to milk recording big data provide new insights into dairy cow health? Journal of Dairy Science, 105(8), 6760-6772. https://doi.org/10.3168/jds.2022-21975

Sokac, M., Ahrenfeldt, J., Litchfield, K., Watkins, T. B. K., Knudsen, M., Dyrskjøt, L., Jakobsen, M. R. & Birkbak, N. J. (2022). Classifying cGAS-STING Activity Links Chromosomal Instability with Immunotherapy Response in Metastatic Bladder Cancer. Cancer Research Communications, 2(8), 762-771. https://doi.org/10.1158/2767-9764.CRC-22-0047, https://doi.org/10.1158/2767-9764.CRC-22-0047

Thomsen, T. H., Jørgensen, L. B., Kjær, T. W., Haahr, A., Vogel, A., Larsen, I. U. & Winge, K. (2022). Clinical Markers of 6 Pre-dominant Coping Behaviors in Living With Parkinson Disease: A Convergent Mixed Methods Study. Inquiry, 59. https://doi.org/10.1177/00469580221129929

Wurtz, K. E., Thodberg, K., Berenjian, A., Foldager, L., Tahamtani, F. M. & Riber, A. B. (2022). Commercial layer hybrids kept under organic conditions: a comparison of range use, welfare, and egg production in two layer strains. Poultry Science, 101(9), Article 102005. https://doi.org/10.1016/j.psj.2022.102005

Gündel, S., Munksgaard, L., Looft, C. & Foldager, L. (2022). Comparison of the feeding behaviour of primiparous and multiparous Jersey and Holstein cows kept under equal conditions throughout lactation. Journal of Dairy Research, 89(1), 37-43. https://doi.org/10.1017/S0022029922000061

Guillemet, M., Chabas, H., Nicot, A., Gatchich, F., Ortega-Abboud, E., Buus, C., Hindhede, L., Rousseau, G. M., Bataillon, T., Moineau, S. & Gandon, S. (2022). Competition and coevolution drive the evolution and the diversification of CRISPR immunity. Nature Ecology & Evolution, 6(10), 1480-1488. https://doi.org/10.1038/s41559-022-01841-9

Ahrenfeldt, J., Christensen, D. S., Sokač, M., Kisistók, J., McGranahan, N. & Birkbak, N. J. (2022). Computational Analysis Reveals the Temporal Acquisition of Pathway Alterations during the Evolution of Cancer. Cancers, 14(23), Article 5817. https://doi.org/10.3390/cancers14235817

Lucotte, E. A., Albiñana, C., Laurent, R., Bhérer, C., Bataillon, T., Toupance, B. & Genome of the Netherland Consortium (2022). Detection of sexually antagonistic transmission distortions in trio datasets. Evolution Letters, 6(2), 203-216. https://doi.org/10.1002/evl3.271

Albiñana, C., Boelt, S. G., Cohen, A. S., Zhu, Z., Musliner, K. L., Vilhjálmsson, B. J. & McGrath, J. J. (2022). Developmental exposure to vitamin D deficiency and subsequent risk of schizophrenia. Schizophrenia Research, 247, 26-32. https://doi.org/10.1016/j.schres.2021.06.004

Rajagopal, V. M., Duan, J., Vilar-Ribó, L., Grove, J., Zayats, T., Ramos-Quiroga, J. A., Satterstrom, F. K., Artigas, M. S., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Als, T. D., Rosengren, A., Daly, M. J., Neale, B. M., Nordentoft, M., Werge, T., Mors, O., Hougaard, D. M., Mortensen, P. B. ... Demontis, D. (2022). Differences in the genetic architecture of common and rare variants in childhood, persistent and late-diagnosed attention-deficit hyperactivity disorder. Nature Genetics, 54(8), 1117-1124. https://doi.org/10.1038/s41588-022-01143-7

Gündel, S., Looft, C., Foldager, L. & Thomsen, P. T. (2022). Effect of lameness on feeding behavior of zero grazed Jersey dairy cows. Frontiers in Veterinary Science, 9, Article 980238. https://doi.org/10.3389/fvets.2022.980238

Amorim Franchi, G., Larsen, M. L. V., Herskin, M. S., Foldager, L., Larsen, M. & Jensen, M. B. (2022). Effects of changes in diet energy density and milking frequency and a single injection of cabergoline at dry-off on feeding behavior and rumination time in dairy cows. JDS Communications , 3(3), 195-200. https://doi.org/10.3168/jdsc.2021-0162

Amorim Franchi, G., Jensen, M. B., Foldager, L., Larsen, M. & Herskin, M. S. (2022). Effects of dietary and milking frequency changes and administration of cabergoline on clinical udder characteristics in dairy cows during dry-off. Research in Veterinary Science, 143, 88-98. https://doi.org/10.1016/j.rvsc.2021.12.019

Hansen, N. P., Kristensen, T., Johansen, M., Wiking, L., Poulsen, N. A., Hellwing, A. L. F., Foldager, L., Jensen, S. K., Larsen, L. B. & Weisbjerg, M. R. (2022). Effects on feed intake, milk production, and methane emission in dairy cows fed silage or fresh grass with concentrate or fresh grass harvested at early or late maturity stage without concentrate. Journal of Dairy Science, 105(10), 8036-8053. https://doi.org/10.3168/jds.2022-21885

Schendel, D., Munk Laursen, T., Albiñana, C., Vilhjalmsson, B., Ladd-Acosta, C., Fallin, M. D., Benke, K., Lee, B., Grove, J., Kalkbrenner, A., Ejlskov, L., Hougaard, D., Bybjerg-Grauholm, J., Baekvad-Hansen, M., Børglum, A. D., Werge, T., Nordentoft, M., Mortensen, P. B. & Agerbo, E. (2022). Evaluating the interrelations between the autism polygenic score and psychiatric family history in risk for autism. Autism Research, 15(1), 171-182. https://doi.org/10.1002/aur.2629

Bergman, J. & Schierup, M. H. (2022). Evolutionary dynamics of pseudoautosomal region 1 in humans and great apes. Genome Biology, 23, Article 215. https://doi.org/10.1186/s13059-022-02784-x