Feyera, T., Pedersen, T. F., Larsen, U. K., Foldager, L. & Theil, P. K. (2018).
Impact of sow energy status during farrowing on farrowing kinetics, frequency of stillborn piglets, and farrowing assistance: Sow energy status and farrowing kinetics.
Journal of Animal Science,
96(6), 2320–2331. [96].
https://doi.org/10.1093/jas/sky141
Maier, R. M., Zhu, Z., Lee, S. H., Trzaskowski, M., Ruderfer, D. M., Stahl, E. A., Ripke, S., Wray, N. R.
, Yang, J., Visscher, P. M., Robinson, M. R., Forstner, A. J., Mcquillin, A., Trubetskoy, V., Wang, W., Wang, Y., Coleman, J. R. I., Gaspar, H. A., De Leeuw, C. A. ... Zammit, S. (2018).
Improving genetic prediction by leveraging genetic correlations among human diseases and traits.
Nature Communications,
9(1), [02769-6].
https://doi.org/10.1038/s41467-017-02769-6
Foldager, L., Liu, Y., Pedersen, H. S., Larsen, K. E., Kristensen, K., Callesen, H. & Sørensen, M. T. (2018).
In-vitro fertilization and in-vitro embryo culture in mouse as a reprotoxicity model for xenobiotics: some considerations on how to analyse data and present results. In P. Linde (Ed.),
Symposium i anvendt statistik 2018 (pp. 188-199)
Ehlers, B., Holmstrup, M., Schmidt, I. K.
, Sørensen, J. G. & Bataillon, T. (2018).
Joint impact of competition, summer precipitation, and maternal effects on survival and reproduction in the perennial Hieracium umbellatum.
Evolutionary Ecology,
32(5), 529-545.
https://doi.org/10.1007/s10682-018-9953-4
Dahl-Pedersen, K., Foldager, L., Herskin, M. S., Houe, H.
& Thomsen, P. T. (2018).
Lameness scoring and assessment of fitness for transport in dairy cows: Agreement among and between farmers, veterinarians and livestock drivers.
Research in Veterinary Science,
119, 162-166.
https://doi.org/10.1016/j.rvsc.2018.06.017
Bjerg, J. T., Boschker, H. T. S.
, Larsen, S., Berry, D., Schmid, M., Millo, D.
, Tataru, P., Meysman, F. J. R., Wagner, M., Nielsen, L. P. & Schramm, A. (2018).
Long-distance electron transport in individual, living cable bacteria.
Proceedings of the National Academy of Sciences,
115(22), 5786-5791.
https://doi.org/10.1073/pnas.1800367115
Salvador-Martínez, I., Coronado-Zamora, M.
, Castellano, D., Barbadilla, A. & Salazar-Ciudad, I. (2018).
Mapping selection within Drosophila melanogaster embryo's anatomy.
Molecular Biology and Evolution,
35(1), 66-79.
https://doi.org/10.1093/molbev/msx266
Schumer, M., Xu, C., Powell, D. L., Durvasula, A.
, Skov, L., Holland, C., Blazier, J. C., Sankararaman, S., Andolfatto, P., Rosenthal, G. G. & Przeworski, M. (2018).
Natural selection interacts with recombination to shape the evolution of hybrid genomes.
Science,
360(6389), 656-660.
https://doi.org/10.1126/science.aar3684
Rousselle, M.
, Mollion, M., Nabholz, B.
, Bataillon, T. & Galtier, N. (2018).
Overestimation of the adaptive substitution rate in fluctuating populations.
Biology Letters,
14(5), [20180055].
https://doi.org/10.1098/rsbl.2018.0055
Hornshøj, H., Nielsen, M. M., Sinnott-Armstrong, N. A.
, Świtnicki, M. P., Juul, M., Madsen, T., Sallari, R., Kellis, M.
, Ørntoft, T., Hobolth, A. & Pedersen, J. S. (2018).
Pan-cancer screen for mutations in non-coding elements with conservation and cancer specificity reveals correlations with expression and survival.
npj Genomic Medicine,
3, 1.
https://doi.org/10.1038/s41525-017-0040-5
Mollion, M., Ehlers, B., Figuet, E., Santoni, S., Lenormand, T., Maurice, S., Galtier, N.
& Bataillon, T. (2018).
Patterns of genome-wide nucleotide diversity in the gynodioecious plant Thymus vulgaris are compatible with recent sweeps of cytoplasmic genes.
Genome Biology and Evolution,
10(1), 239-248.
https://doi.org/10.1093/gbe/evx272
Zheng, J., Richardson, T. G., Millard, L. A. C., Hemani, G., Elsworth, B. L., Raistrick, C. A.
, Vilhjalmsson, B., Neale, B. M., Haycock, P. C., Smith, G. D. & Gaunt, T. R. (2018).
PhenoSpD: an integrated toolkit for phenotypic correlation estimation and multiple testing correction using GWAS summary statistics.
GigaScience,
7(8), 1-10.
https://doi.org/10.1093/gigascience/giy090
Ludvigsen, M., Bjerregård Pedersen, M., Lystlund Lauridsen, K., Svenstrup Poulsen, T.
, Hamilton-Dutoit, S. J., Besenbacher, S., Bendix, K., Møller, M. B.
, Nørgaard, P., d'Amore, F. & Honoré, B. (2018).
Proteomic profiling identifies outcome-predictive markers in patients with peripheral T-cell lymphoma, not otherwise specified.
Blood Advances,
2(19), 2533-2542.
https://doi.org/10.1182/bloodadvances.2018019893
Nielsen, M. M., Tataru, P., Madsen, T., Hobolth, A. & Pedersen, J. S. (2018).
Regmex: A statistical tool for exploring motifs in ranked sequence lists from genomics experiments.
Algorithms for Molecular Biology,
13(1), [17].
https://doi.org/10.1186/s13015-018-0135-2
Munch, D., Gupta, V., Bachmann, A., Busch, W.
, Kelly, S., Mun, T. & Andersen, S. U. (2018).
The Brassicaceae family displays divergent, shoot-skewed NLR resistance gene expression.
Plant Physiology,
176(2), 1598-1609.
https://doi.org/10.1104/pp.17.01606
Thornton, L. M., Munn-Chernoff, M. A., Baker, J. H., Juréus, A., Parker, R., Henders, A. K.
, Larsen, J. T., Petersen, L., Watson, H. J., Yilmaz, Z., Kirk, K. M., Gordon, S., Leppä, V. M., Martin, F. C., Whiteman, D. C., Olsen, C. M., Werge, T. M., Pedersen, N. L., Kaye, W. ... Bulik, C. M. (2018).
The anorexia nervosa genetics initiative (ANGI): Overview and methods.
Contemporary Clinical Trials,
74, 61-69.
https://doi.org/10.1016/j.cct.2018.09.015
Fragata, I., Matuszewski, S., Schmitz, M. A.
, Bataillon, T., Jensen, J. D. & Bank, C. (2018).
The fitness landscape of the codon space across environments.
Heredity.
https://doi.org/10.1038/s41437-018-0125-7
Pedersen, C. B., Bybjerg-Grauholm, J.
, Pedersen, M. G., Grove, J., Agerbo, E., Bækvad-Hansen, M., Poulsen, J. B., Hansen, C. S.
, McGrath, J. J., Als, T. D., Goldstein, J. I., Neale, B. M., Daly, M. J., Hougaard, D. M.
, Mors, O., Nordentoft, M.
, Børglum, A. D., Werge, T.
& Mortensen, P. B. (2018).
The iPSYCH2012 case-cohort sample: new directions for unravelling genetic and environmental architectures of severe mental disorders.
Molecular Psychiatry,
23(1), 6–14.
https://doi.org/10.1038/mp.2017.196
Kong, A., Thorleifsson, G., Frigge, M. L.
, Vilhjalmsson, B. J., Young, A. I., Thorgeirsson, T. E., Benonisdottir, S., Oddsson, A., Halldorsson, B. V., Masson, G., Gudbjartsson, D. F., Helgason, A., Bjornsdottir, G., Thorsteinsdottir, U. & Stefansson, K. (2018).
The nature of nurture: Effects of parental genotypes.
Science,
359(6374), 424-428.
https://doi.org/10.1126/science.aan6877
Østergaard, S. D., Foldager, L., Mors, O., Bech, P. & Correll, C. U. (2018).
The validity and sensitivity of PANSS-6 in treatment-resistant schizophrenia.
Acta Psychiatrica Scandinavica,
138(5), 420-431.
https://doi.org/10.1111/acps.12952
Østergaard, S. D., Foldager, L., Mors, O., Beck, P. & Correll, C. U. (2018).
The validity and sensitivity of PANSS-6 in treatment-resistant schizophrenia.
Schizophrenia Bulletin,
44(Suppl_1), S341-S342.
Ernst, E. H., Nielsen, J., Ipsen, M. B., Villesen, P. & Lykke-Hartmann, K. (2018).
Transcriptome analysis of long non-coding RNAs and genes encoding paraspeckle proteins during human ovarian follicle development.
Frontiers in Cell and Developmental Biology,
6(78), [78].
https://doi.org/10.3389/fcell.2018.00078
Winge, S. B., Dalgaard, M. D., Belling, K. G.
, Jensen, J. M., Nielsen, J. E., Aksglaede, L.
, Schierup, M. H., Brunak, S., Skakkebæk, N. E., Juul, A., Rajpert-De Meyts, E. & Almstrup, K. (2018).
Transcriptome analysis of the adult human Klinefelter testis and cellularity-matched controls reveals disturbed differentiation of Sertoli- and Leydig cells article.
Cell Death and Disease,
9(6), [586].
https://doi.org/10.1038/s41419-018-0671-1
Winge, S. B., Dalgaard, M. D.
, Jensen, J. M., Graem, N.
, Schierup, M. H., Juul, A., Rajpert-De Meyts, E. & Almstrup, K. (2018).
Transcriptome profiling of fetal Klinefelter testis tissue reveals a possible involvement of long non-coding RNAs in gonocyte maturation.
Human Molecular Genetics,
27(3), 430-439.
https://doi.org/10.1093/hmg/ddx411
Bai, H., Guo, X., Narisu, N., Lan, T., Wu, Q., Xing, Y., Zhang, Y., Bond, S. R., Pei, Z., Zhang, Y., Zhang, D., Jirimutu, J., Zhang, D., Yang, X., Morigenbatu, M., Zhang, L., Ding, B., Guan, B., Cao, J. ... Yin, Y. (2018).
Whole-genome sequencing of 175 Mongolians uncovers population-specific genetic architecture and gene flow throughout North and East Asia.
Nature Genetics,
50, 1696–1704.
https://doi.org/10.1038/s41588-018-0250-5
Murra, M., Lützen, L., Barut, A., Zbinden, R.
, Lund, M., Villesen, P. & Nørskov-Lauritsen, N. (2018).
Whole-genome sequencing of aggregatibacter species isolated from human clinical specimens and description of Aggregatibacter kilianii sp. Nov. Journal of Clinical Microbiology,
56(7), [UNSP e00053-18].
https://doi.org/10.1128/JCM.00053-18
Bertl, J., Guo, Q., Rasmussen, M. J., Besenbacher, S., Nielsen, M. M., Hornshøj, H., Pedersen, J. S. & Hobolth, A. (2017).
A Site Specific Model And Analysis Of The Neutral Somatic Mutation Rate In Whole-Genome Cancer Data.
https://doi.org/10.1101/122879
Prüfer, K., de Filippo, C., Grote, S., Mafessoni, F., Korlević, P., Hajdinjak, M., Vernot, B.
, Skov, L., Hsieh, P., Peyrégne, S., Reher, D., Hopfe, C., Nagel, S., Maricic, T., Fu, Q., Theunert, C., Theunert, C., Rogers, R., Skoglund, P. ... Pääbo, S. (2017).
A high-coverage Neandertal genome from Vindija Cave in Croatia.
Science,
358(6363), 655-658.
https://doi.org/10.1126/science.aao1887
Álvarez-Álvarez, M. M., Zanetti, D., Carreras-Torres, R., Moral, P.
& Athanasiadis, G. (2017).
A survey of sub-Saharan gene flow into the Mediterranean at risk loci for coronary artery disease.
European Journal of Human Genetics,
25(4), 472-476.
https://doi.org/10.1038/ejhg.2016.200
Palmgren, M., Engström, K., Hallström, B. M., Wahlberg, K.
, Søndergaard, D. A., Säll, T., Vahter, M. & Broberg, K. (2017).
AS3MT-mediated tolerance to arsenic evolved by multiple independent horizontal gene transfers from bacteria to eukaryotes.
P L o S One,
12(4), e0175422.
https://doi.org/10.1371/journal.pone.0175422
St Pourcain, B., Robinson, E. B., Anttila, V., Sullivan, B. B., Maller, J., Golding, J., Skuse, D.
, Ring, S., Evans, D. M., Zammit, S., Fisher, S. E., Neale, B. M., Anney, R. J. L., Ripke, S.
, Hollegaard, M. V., Werge, T., Ronald, A.
, Grove, J., Hougaard, D. M. ... iPSYCH-SSI-Broad Autism Group (2017).
ASD and schizophrenia show distinct developmental profiles in common genetic overlap with population-based social communication difficulties.
Molecular Psychiatry,
23, 263-270.
https://doi.org/10.1038/mp.2016.198
Jensen, J. M., Villesen, P., Friborg, R. M., Mailund, T., Besenbacher, S., Schierup, M. H. & Danish Pan-Genome Consortium (Jakob Grove, member of -) (2017).
Assembly and analysis of 100 full MHC haplotypes from the Danish population.
Genome Research, 1597-1607.
https://doi.org/10.1101/gr.218891.116
Debost, J-C., Debost, M.
, Grove, J., Mors, O., Hougaard, D. M.
, Børglum, A. D., Mortensen, P. B. & Petersen, L. (2017).
COMT Val158Met and MTHFR C677T moderate risk of schizophrenia in response to childhood adversity.
Acta Psychiatrica Scandinavica,
136(1), 85-95.
https://doi.org/10.1111/acps.12761
Okholm, T. L. H., Nielsen, M. M., Hamilton, M.
, Christensen, L-L., Vang, S., Hedegaard, J., Hansen, T. B., Kjems, J., Dyrskjøt, L. & Pedersen, J. S. (2017).
Circular RNA expression is abundant and correlated to aggressiveness in early-stage bladder cancer.
npj Genomic Medicine,
2, [36].
https://doi.org/10.1038/s41525-017-0038-z
Aschard, H., Guillemot, V.
, Vilhjalmsson, B., Patel, C. J., Skurnik, D., Ye, C. J., Wolpin, B., Kraft, P. & Zaitlen, N. (2017).
Covariate selection for association screening in multiphenotype genetic studies.
Nature Genetics,
49(12), 1789-1795.
https://doi.org/10.1038/ng.3975
Foldager, L., Gildbjerg, L. B., Voss, H., Trénel, P.
, Munksgaard, L. & Thomsen, P. T. (2017).
Daily eating activity of dairy cows from 3D accelerometer data and RFID signals: prediction by random forests and detection of sick cows. In P. Linde (Ed.),
Symposium i Anvendt Statistik (pp. 109-122)
Jónsson, H., Sulem, P., Kehr, B., Kristmundsdottir, S., Zink, F., Hjartarson, E., Hardarson, M. T., Hjorleifsson, K. E., Eggertsson, H. P., Gudjonsson, S. A., Ward, L. D., Arnadottir, G. A., Helgason, E. A., Helgason, H., Gylfason, A., Jonasdottir, A., Jonasdottir, A., Rafnar, T.
, Besenbacher, S. ... Stefansson, K. (2017).
Data Descriptor: Whole genome characterization of sequence diversity of 15,220 Icelanders.
Scientific Data,
4, [170115].
https://doi.org/10.1038/sdata.2017.115
Midzi, N., Mduluza, T., Mudenge, B.
, Foldager, L. & Leutscher, P. D. C. (2017).
Decrease in Seminal HIV-1 RNA Load After Praziquantel Treatment of Urogenital Schistosomiasis Coinfection in HIV-Positive Men—An Observational Study.
Open Forum Infectious Diseases,
4(4), [ofx199].
https://doi.org/10.1093/ofid/ofx199