Publications

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Duan, H., Mansour, S., Reed, R., Gillis, M. K., Parent, B., Liu, B., Sztupinszki, Z., Birkbak, N., Szallasi, Z., Elia, A. E. H., Garber, J. E. & Pathania, S. (2020). E3 ligase RFWD3 is a novel modulator of stalled fork stability in BRCA2-deficient cells. The Journal of Cell Biology, 219(6), Article e201908192. https://doi.org/10.1083/jcb.201908192

Duan, J. (2017). Biological insights from next-generation sequencing data analysis.

Draghi, A., Chamberlain, C. A., Khan, S., Papp, K., Lauss, M., Soraggi, S., Radic, H. D., Presti, M., Harbst, K., Gokuldass, A., Kverneland, A., Nielsen, M., Westergaard, M. C. W., Andersen, M. H., Csabai, I., Jönsson, G., Szallasi, Z., Svane, I. M. & Donia, M. (2021). Rapid Identification of the Tumor-Specific Reactive TIL Repertoire via Combined Detection of CD137, TNF, and IFNγ, Following Recognition of Autologous Tumor-Antigens. Frontiers in Immunology, 12, Article 705422. https://doi.org/10.3389/fimmu.2021.705422

Donelly, P. & Wiuf, C. (1999). Shared chromosomal segments and genome-wide association mapping.

Dominguez-Valentin, M., Plazzer, J. P., Sampson, J. R., Engel, C., Aretz, S., Jenkins, M. A., Sunde, L., Bernstein, I., Capella, G., Balaguer, F., Macrae, F., Winship, I. M., Thomas, H., Evans, D. G., Burn, J., Greenblatt, M., de Vos tot Nederveen Cappel, W. H., Sijmons, R. H., Nielsen, M. ... Møller, P. (2021). No difference in penetrance between truncating and missense/aberrant splicing pathogenic variants in mlh1 and msh2: A prospective lynch syndrome database study. Journal of Clinical Medicine, 10(13), Article 2856. https://doi.org/10.3390/jcm10132856

Djernes, J. K., Gulmann, N. C., Ibsen, M., Foldager, L., Olesen, F. & Munk-Jørgensen, P. (2008). A follow-up of elderly depressed patients. Nordic Journal of Psychiatry, 62(3), 233-41. https://doi.org/10.1080/08039480802088296

Djernes, J. K., Gulmann, N. C., Foldager, L., Olesen, F. & Munk-Jørgensen, P. (2011). 13 year follow up of morbidity, mortality and use of health services among elderly depressed patients and general elderly populations. The Australian & New Zealand Journal of Psychiatry, 45(8), 654-662. https://doi.org/10.3109/00048674.2011.589368

Dittmer, J., Thøgersen, L., Underhaug, J., Bertelsen, K., Vosegaard, T., Pedersen, J. M., Schiøtt, H. B., Tajkhorshid, E., Skrydstrup, T. & Nielsen, N. C. (2009). Incorporation of Antimicrobial Peptides into Membranes: A Combined Liquid-State NMR and Molecular Dynamics Study of Alamethicin in DMPC/DHPC Bicelles. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 113(19), 6928-6937. https://doi.org/10.1021/jp811494p

Ding, Z., Mailund, T. & Song, Y. (2008). Efficient Whole-Genome Association Mapping using Local Phylogenies for Unphased Genome Data. Bioinformatics, 2215-2221.

Ding, Y., Hou, K., Xu, Z., Pimplaskar, A., Petter, E., Boulier, K., Privé, F., Vilhjálmsson, B. J., Olde Loohuis, L. M. & Pasaniuc, B. (2023). Polygenic scoring accuracy varies across the genetic ancestry continuum. Nature, 618, 774-781. https://doi.org/10.1038/s41586-023-06079-4

Dinér, P., Laursen, A. K. K., Lie, M. A. & Jørgensen, K. A. (2007). On the Origin of the Stereoselectivity in Organocatalysed Reactions with Trimethylsilyl-Protected Diarylprolinol. Chemistry - A European Journal, 14(1), 122-127.

Dieter, Strutwolf, J. & Thøgersen, L. (2001). Investigation of some starting protocols for BDF (FIRM) in electrochemical digital simulation. Journal of Electroanalytical Chemistry, 512, 119-123.

Devantier, T. A., Nørgaard, B. L., Sand, N. P., Mols, R. E., Foldager, L., Diederichsen, A. C. P., Thomsen, K. K., Jensen, J. M. & Videbech, P. (2013). Lack of Correlation Between Depression and Coronary Artery Calcification in a Non-Selected Danish Population. Psychosomatics, 54(5), 458-65. https://doi.org/10.1016/j.psym.2013.01.005

de Silva, E., Thorne, T., Ingram, P., Agrafioti, I., Swire, J., Wiuf, C. & Stumpf, MPH. (2006). The effects of incomplete protein interaction data on structural and evolutionary inferences. BMC Biology, 4(39). https://doi.org/10.1186/1741-7007-4-39

Demontis, D., Nyegaard, M., Buttenschøn, H. N., Hedemand, A., Pedersen, C. B., Grove, J., Flint, T. J., Nordentoft, M., Werge, T., Hougaard, D. M., Sørensen, K. M., Yolken, R. H., Mors, O., Børglum, A. D. & Mortensen, P. B. (2011). Association of GRIN1 and GRIN2A-D With schizophrenia and genetic interaction with maternal herpes simplex virus-2 infection affecting disease risk. American Journal of Medical Genetics. Part B: Neuropsychiatric Genetics, 156(8), 913-922. https://doi.org/10.1002/ajmg.b.31234

Demontis, D., Walters, R. K., Martin, J., Mattheisen, M., Als, T. D., Agerbo, E., Baldursson, G., Belliveau, R., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Cerrato, F., Chambert, K., Churchhouse, C., Dumont, A., Eriksson, N., Gandal, M., Goldstein, J. I., Grasby, K. L., Grove, J. ... Børglum, A. D. (2019). Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder. Nature Genetics, 51(1), 63–75. https://doi.org/10.1038/s41588-018-0269-7

Demontis, D., Rajagopal, V. M., Thorgeirsson, T. E., Als, T. D., Grove, J., Leppälä, K., Gudbjartsson, D. F., Pallesen, J., Hjorthøj, C., Reginsson, G. W., Tyrfingsson, T., Runarsdottir, V., Qvist, P., Christensen, J. H., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Huckins, L. M., Stahl, E. A., Timmermann, A. ... Børglum, A. D. (2019). Genome-wide association study implicates CHRNA2 in cannabis use disorder. Nature Neuroscience, 22, 1066-1074. https://doi.org/10.1038/s41593-019-0416-1

Demontis, D., Walters, R. K., Rajagopal, V. M., Waldman, I. D., Grove, J., Als, T. D., Dalsgaard, S., Ribasas, M., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Werge, T., Nordentoft, M., Mors, O., Mortensen, P. B., ADHD Working Group of the Psychiatric Genomics Consortium (PGC), Cormand, B., Hougaard, D. M., Neale, B. M., Franke, B. ... Børglum, A. D. (2021). Risk variants and polygenic architecture of disruptive behavior disorders in the context of attention-deficit/hyperactivity disorder. Nature Communications, 12(1), Article 576. https://doi.org/10.1038/s41467-020-20443-2

Demontis, D., Walters, R. K., Rajagopal, V. M., Waldman, I. D., Grove, J., Als, T. D., Dalsgaard, S., Ribasés, M., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Werge, T., Nordentoft, M., Mors, O., Mortensen, P. B., ADHD Working Group of the Psychiatric Genomics Consortium (PGC), Cormand, B., Hougaard, D. M., Neale, B. M., Franke, B. ... Børglum, A. D. (2021). Author Correction: Risk variants and polygenic architecture of disruptive behavior disorders in the context of attention-deficit/hyperactivity disorder (Nature communications (2021) 12 1 (576)). Nature Communications, 12, Article 1166. https://doi.org/10.1038/s41467-021-21566-w

Demontis, D., Walters, G. B., Athanasiadis, G., Walters, R., Therrien, K., Nielsen, T. T., Farajzadeh, L., Voloudakis, G., Bendl, J., Zeng, B., Zhang, W., Grove, J., Als, T. D., Duan, J., Satterstrom, F. K., Bybjerg-Grauholm, J., Bækved-Hansen, M., Gudmundsson, O. O., Magnusson, S. H. ... ADHD Working Group of the Psychiatric Genomics Consortium (2023). Genome-wide analyses of ADHD identify 27 risk loci, refine the genetic architecture and implicate several cognitive domains. Nature Genetics, 55(2), 198-208. https://doi.org/10.1038/s41588-022-01285-8

ADHD Working Group of the Psychiatric Genomics Consortium (2023). Author Correction: Genome-wide analyses of ADHD identify 27 risk loci, refine the genetic architecture and implicate several cognitive domains. Nature Genetics, 55(4), 730. https://doi.org/10.1038/s41588-023-01350-w

De Mita, S., Santoni, S., Hochu, I., Ronfort, J. & Bataillon, T. (2006). Molecular evolution and positive selection of the symbiotic gene NORK in Medicago truncatula. Journal of Molecular Evolution, 62(2), 234-244.

De Mita, S., Santoni, S., Ronfort, J. & Bataillon, T. (2007). Adaptive evolution of the symbiotic gene NORK is not correlated with shifts of rhizobial specificity in the genus Medicago. BMC Evolutionary Biology, 7. https://doi.org/10.1186/1471-2148-7-210

De Mita, S., Ronfort, J., McKhann, H. I., Poncet, C., El Malki, R. & Bataillon, T. (2007). Investigation of the demographic and selective forces shaping the nucleotide diversity of genes involved in nod factor signaling in Medicago truncatula. Genetics, 177(4), 2123-33. https://doi.org/10.1534/genetics.107.076943

De Mita, S., Chantret, N., Loridon, K., Ronfort, J. & Bataillon, T. (2011). Molecular adaptation in flowering and symbiotic recognition pathways: insights from patterns of polymorphism in the legume Medicago truncatula. BMC Evolutionary Biology, 11(1), 229-241. https://doi.org/10.1186/1471-2148-11-229

De Koster, J., Salavati, M., Grelet, C., Crowe, M. A., Matthews, E., O'Flaherty, R., Opsomer, G., Foldager, L., GplusE Consortium & Hostens, M. (2019). Prediction of metabolic clusters in early lactation dairy cows using models based on milk biomarkers. Journal of Dairy Science, 102(3), 2631-2644. https://doi.org/10.3168/jds.2018-15533

de Groot, S., Mailund, T. & Hein, J. (2007). Comparative Annotation of Viral Genomes with Non-Conserved Gene Structure. Bioinformatics, 23(9), 1080-1089. https://doi.org/10.1093/bioinformatics/btm078

de Groot, S., Mailund, T., Lunter, G. & Hein, J. (2008). Investigating Selection on Viruses: A Statistical Alignment Approach. BMC Bioinformatics, 9(308).

Debost, J.-C., Petersen, L., Grove, J., Khashan, A., Henriksen, T., Mors, O., Hollegaard, M., Hougaard, D., Nyegaard, M., Børglum, A. & Mortensen, P. B. (2015). Investigating interactions between early life stress and two single nucleotide polymorphisms in HSD11B2 on the risk of schizophrenia. Psychoneuroendocrinology, 60, 18-27. https://doi.org/10.1016/j.psyneuen.2015.05.013

Debost, J.-C., Debost, M., Grove, J., Mors, O., Hougaard, D. M., Børglum, A. D., Mortensen, P. B. & Petersen, L. (2017). COMT Val158Met and MTHFR C677T moderate risk of schizophrenia in response to childhood adversity. Acta Psychiatrica Scandinavica, 136(1), 85-95. https://doi.org/10.1111/acps.12761

De, T., Goncalves, A., Speed, D., Froguel, P., NFBC consortium, Gaffney, D. J., Johnson, M. R., Jarvelin, M.-R. & Coin, L. J. (2021). Signatures of TSPAN8 variants associated with human metabolic regulation and diseases. iScience, 24(8), Article 102893. https://doi.org/10.1016/j.isci.2021.102893

Davies, J., Simancik, F., Lyngsø, R., Mailund, T. & Hein, J. (2007). On Recombination-Induced Multiple and Simultaneous Coalescent Events. Genetics, 177, 2151-2160.

Dardani, C., Robinson, J. W., Jones, H. J., Rai, D., Stergiakouli, E., Grove, J., Gardner, R., McIntosh, A. M., Havdahl, A., Hemani, G., Davey Smith, G., Richardson, T. G., Gaunt, T. R. & Khandaker, G. M. (2025). Immunological drivers and potential novel drug targets for major psychiatric, neurodevelopmental, and neurodegenerative conditions. Molecular Psychiatry, 30(10), 4487-4496. Article e1004092. https://doi.org/10.1038/s41380-025-03032-x

Damsgaard, E. M., Frøland, A., Jørgensen, O. D. & Mogensen, C. E. (1992). Eight to nine year mortality in known non-insulin dependent diabetics and controls. Kidney International, 41(4), 731-5.

Damsgaard, E. M., Frøland, A., Jørgensen, O. D. & Mogensen, C. E. (1990). Microalbuminuria as predictor of increased mortality in elderly people. BMJ, 300(6720), 297-300.

d'Amore, F., Chan, E., Iqbal, J., Geng, H., Young, K., Xiao, L., Hess, M. M., Sanger, W. G., Smith, L., Wiuf, C., Hagberg, O., Fu, K., Chan, W. C. & Dave, B. J. (2008). Clonal evolution in t(14;18)-positive follicular lymphoma, evidence for multiple common pathways, and frequent parallel clonal evolution. Clinical Cancer Research, 14(22), 7180-7. https://doi.org/10.1158/1078-0432.CCR-08-0752

Damgaard, C., Pedersen, M. H., Bendsen, N. B., Mikkelsen, D. L., Ehlers, B. & Bataillon, T. (2022). Measuring plant diversity in a two-stage sampling design by Bayesian updated relative abundances. bioRxiv. https://doi.org/10.1101/2022.03.23.485475

Dam, S., Dyrlund, T. F., Ussatjuk, A., Jochimsen, B., Nielsen, K., Goffard, N., Ventosa, M. A. L., Lorentzen, A. M., Gupta, V., Andersen, S. U., Enghild, J. J., Ronson, C. W., Roepstorff, P. & Stougaard, J. (2014). Proteome reference maps of the Lotus japonicus nodule and root. Proteomics, 14(2-3), 230-240. https://doi.org/10.1002/pmic.201300353

Dam, M., Centanni, M., Friberg, L. E., Centanni, D., Karlsson, M. O., Stensig Lynggaard, L., Johannsdottir, I. M., Wik, H. S., Malmros, J., Vaitkeviciene, G. E., Griskevicius, L., Hallböök, H., Jónsson, Ó. G., Overgaard, U., Schmiegelow, K., Hansen, S. N., Heyman, M. & Albertsen, B. K. (2024). Increase in peg-asparaginase clearance as a predictor for inactivation in patients with acute lymphoblastic leukemia. Leukemia, 38(4), 712-719. https://doi.org/10.1038/s41375-024-02153-6

Dam, M., Lynggaard, L. S., Jónsson, Ó. G., Saulyte Trakymiene, S., Palk, K., Jarvis, K., Andrés-Jensen, L., Tuckuviene, R. & Albertsen, B. K. (2024). Sequelae and post-thrombotic syndrome after venous thromboembolism in acute lymphoblastic leukemia survivors treated on the NOPHO ALL2008 protocol. Pediatric Blood and Cancer, 71(6), Article e30937. https://doi.org/10.1002/pbc.30937

Dalevi, D., DeSantis, T. Z., Fredslund, J., Andersen, G. L., Markowitz, V. M. & Hugenholtz, P. (2007). Automated assignment of groups in large phylogenetic trees using GRUNT: Grouping, Ungrouping, Naming Tool. BMC Bioinformatics, 8, 402-407.

Dalby, R. B., Elfving, B., Plougmann, P. H., Foldager, L., Rosenberg, R. & Videbech, P. (2011). Correlations between brain-derived neurotrophic factor (BDNF), vascular endothelial growth factor (VEGF), and vascular risk factors in late-onset major depression. Poster session presented at IBRO 8th World Congress of Neuroscience, Firenze, Italy.

Dalby, R. B., Elfving, B., Poulsen, P. H. P., Foldager, L., Frandsen, J., Videbech, P. & Rosenberg, R. (2013). Plasma brain-derived neurotrophic factor and prefrontal white matter integrity in late-onset depression and normal aging. Acta Psychiatrica Scandinavica, 128(5), 387-396. https://doi.org/10.1111/acps.12085

Dai, N., Foldager, L., Gallego, J. A., Hack, L. M., Ji, Y., Lett, T. A. P., Liu, B., Loken, E. K., Mandelli, L., Mehta, D., Power, R. A., Sprooten, E., Stephens, S. H., Paska, A. V., Yan, J., Zai, C. C., Zai, G., Zhang-James, Y., O'Shea, A. & DeLisi, L. E. (2012). Summaries from the XIX World Congress of Psychiatric Genetics, Washington, DC, September 10-14 2011. American Journal of Medical Genetics. Part B: Neuropsychiatric Genetics, 159B(1), 128-129. https://doi.org/10.1002/ajmg.b.32017

Dahl-Pedersen, K., Foldager, L., Houe, H., Herskin, M. S. & Thomsen, P. T. (2016). Do farmers, veterinarians and livestock drivers agree when assessing dairy cow lameness and fitness for transport. In Abstracts book (pp. 161)

Dahl-Pedersen, K., Foldager, L., Herskin, M. S., Houe, H. & Thomsen, P. T. (2018). Lameness scoring and assessment of fitness for transport in dairy cows: Agreement among and between farmers, veterinarians and livestock drivers. Research in Veterinary Science, 119, 162-166. https://doi.org/10.1016/j.rvsc.2018.06.017

Czyżewski, S., Søndergaard, S. A., Molnár, Á. P., Kerr, M. R., Kristensen, J. A., Atkinson, J., Trepel, J., Sykut, M., Radzikowski, P., Termansen, S. S., Wałach, K., Pearce, E. A., Pang, S. E. H., Zając, B., Bergman, J., Thomassen, E. S., Mungi, N., Fløjgaard, C., Ejrnæs, R. ... Svenning, J. C. (2026). Revisiting Europe's temperate forests: Palaeoecological evidence for an herbivory-driven woodland-grassland mosaic biome. Biological Conservation, 316, Article 111749. https://doi.org/10.1016/j.biocon.2026.111749

Coutant, M. P., Malmkvist, J., Kaiser, M. Ø., Foldager, L. & Herskin, M. S. (2022). Piglets' acute responses to procaine-based local anesthetic injection and surgical castration: Effects of two volumes of anesthetic. Frontiers in Pain Research, 3, Article 943138. https://doi.org/10.3389/fpain.2022.943138

Coutant, M. P., Malmkvist, J., Kaiser, M., Foldager, L. & Herskin, M. S. (2022). On-farm administration of local anaesthetic and surgical castration of piglets: acute behavioural and physiological consequences. In M. Kjosevski, S. Waiblinger & V. Ilieski (Eds.), Proceedings of the 55th Congress of the ISAE: Animal Behaviour and Beyond (pp. 19-19). https://www.applied-ethology.org/res/ISAE_2022_PROCEEDINGS_e-version.pdf

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