Publications

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Chen, J., Bataillon, T., Glémin, S. & Lascoux, M. (2022). Hunting for Beneficial Mutations: Conditioning on SIFT Scores When Estimating the Distribution of Fitness Effect of New Mutations. Genome Biology and Evolution, 14(1), Article evab151. https://doi.org/10.1093/gbe/evab151

Chen, Y., Atashi, H., Mota, R. R., Grelet, C., Vanderick, S., Hu, H., GplusE Consortium & Gengler, N. (2023). Validating genomic prediction for nitrogen efficiency index and its composition traits of Holstein cows in early lactation. Journal of Animal Breeding and Genetics (Online), 140(6), 695-706. https://doi.org/10.1111/jbg.12819

Chen, Y., Atashi, H., Grelet, C., Mota, R. R., Vanderick, S., Hu, H., GplusE Consortium & Gengler, N. (2023). Genome-wide association study and functional annotation analyses for nitrogen efficiency index and its composition traits in dairy cattle. Journal of Dairy Science, 106(5), 3397-3410. https://doi.org/10.3168/jds.2022-22351

Chen, G., Kobek-Kjeldager, C., Jensen, L. D., Kristensen, J. K., Kaiser, M., Thodberg, K., Zhang, G., Rong, L., Herskin, M. S. & Foldager, L. (2024). Experimental study on temperature difference between the interior and exterior of the vehicle transporting weaner pigs. Biosystems Engineering, 247, 119-131. https://doi.org/10.1016/j.biosystemseng.2024.09.001

Chatwin, H., Holde, K., Yilmaz, Z., Larsen, J. T., Albiñana, C., Vilhjálmsson, B. J., Mortensen, P. B., Thornton, L. M., Bulik, C. M. & Petersen, L. V. (2023). Risk factors for anorexia nervosa: A population-based investigation of sex differences in polygenic risk and early life exposures. International Journal of Eating Disorders, 56(9), 1703-1716. https://doi.org/10.1002/eat.23997

Charmouh, A. P., Bocedi, G. & Hartfield, M. (2023). Inferring the distributions of fitness effects and proportions of strongly deleterious mutations. G3: Genes, Genomes, Genetics, 13(9), Article jkad140. https://doi.org/10.1093/g3journal/jkad140

Charmouh, A. P., Porsborg, P. S., Hansen, L. T., Besenbacher, S., Boeg Winge, S., Almstrup, K., Hobolth, A., Bataillon, T. & Schierup, M. H. (2025). Estimating Gene Conversion Tract Length and Rate From PacBio HiFi Data. Molecular Biology and Evolution, 42(2), Article msaf019. https://doi.org/10.1093/molbev/msaf019

Charlesworth, D., Bartolomé, C., Schierup, M. H. & Mable, B. K. (2003). Haplotype structure of the stigmatic self-incompatibility gene in natural populations of Arabidopsis lyrata. Mol. Biol. Evol., 20(11), 1741-1753.

Charlesworth, D., Mable, B. K., Schierup, M. H., Bartolomé, C., Awadalla, P. & Schierup, M. H. (2003). Diversity and linkage of genes in the self-incompatibility gene family in Arabidopsis lyrata. Genetics, 164, 1519-1535.

Chalmer, M. A., Kogelman, L. J. A., Ullum, H., Sørensen, E., Didriksen, M., Mikkelsen, S., Dinh, K. M., Brodersen, T., Nielsen, K. R., Bruun, M. T., Banasik, K., Brunak, S., Erikstrup, C., Pedersen, O. B., Ostrowski, S. R., Olesen, J. & Hansen, T. F. (2023). Population-Based Characterization of Menstrual Migraine and Proposed Diagnostic Criteria. JAMA network open, 6(5), e2313235. Article e2313235. https://doi.org/10.1001/jamanetworkopen.2023.13235

Cavassim, M. I. A., Moeskjær, S., Moslemi, C., Fields, B., Bachmann, A., Vilhjálmsson, B. J., Schierup, M. H., W Young, J. P. & Andersen, S. U. (2020). Symbiosis genes show a unique pattern of introgression and selection within a Rhizobium leguminosarum species complex. Microbial Genomics, 6(4), Article 000351. https://doi.org/10.1099/mgen.0.000351

Cavassim, M. I. A., Andersen, S. U., Bataillon, T. & Schierup, M. H. (2021). Recombination facilitates adaptive evolution in rhizobial soil bacteria. Molecular Biology and Evolution, 38(12), 5480-5490. https://doi.org/10.1093/molbev/msab247

Cavassim, M. I. A., Baker, Z., Hoge, C., Schierup, M. H., Schumer, M. & Przeworski, M. (2022). PRDM9 losses in vertebrates are coupled to those of paralogs ZCWPW1 and ZCWPW2. Proceedings of the National Academy of Sciences (PNAS), 119(9), Article e2114401119. https://doi.org/10.1073/pnas.2114401119

Cavassim, M. I. A. (2020). Recombination and horizontal gene transfer through the lens of phylogenomics. [PhD thesis, Aarhus University]. Aarhus Universitet.

Castric, V., Bechsgaard, J., Schierup, M. H. & Vekemans, X. (2008). Repeated adaptive introgression at a gene under multiallelic balancing selection. PLoS Genetics, 4(8), e1000168. https://doi.org/10.1371/journal.pgen.1000168

Castric, V., Bechsgaard, J. S., Grenier, S., Noureddine, R., Schierup, M. H. & Vekemans, X. (2010). Molecular evolution within and between self-incompatibility specificities. Molecular Biology and Evolution, 27(1), 11-20. https://doi.org/10.1093/molbev/msp224

Castenschiold, C. D. F., Mignani, C., Christiansen, S., Alsved, M., Ickes, L., Tesson, S. V. M., Löndahl, J., Bilde, M., Bataillon, T., Finster, K. & Šantl-Temkiv, T. (2025). Atmospheric Biogenic Ice-Nucleating Particles Link to Microbial Communities in the Arctic Marine Environment in Western Greenland. Environmental Science and Technology, 59(42), 22518-22532. https://doi.org/10.1021/acs.est.5c03650

Castellano, D., James, J. & Eyre-Walker, A. (2018). Nearly Neutral Evolution across the Drosophila melanogaster Genome. Molecular Biology and Evolution, 35(11), 2685-2694. https://doi.org/10.1093/molbev/msy164

Castellano, D., Macià, M. C., Tataru, P., Bataillon, T. & Munch, K. (2019). Comparison of the Full Distribution of Fitness Effects of New Amino Acid Mutations Across Great Apes. Genetics, 213(3), 953-966. https://doi.org/10.1534/genetics.119.302494

Castellano, D., Eyre-Walker, A. & Munch, K. (2019). Impact of mutation rate and selection at linked sites on DNA variation across the genomes of humans and other homininae. Genome Biology and Evolution, 12(1), 3550-3561. https://doi.org/10.1093/gbe/evz215

Castellano, D. & Munch, K. (2020). Population Genomics in the Great Apes. In J. Y. Dutheil (Ed.), Methods in Molecular Biology (pp. 453-463). Springer. https://doi.org/10.1007/978-1-0716-0199-0_19

Castagnini, A., Foldager, L. & Bertelsen, A. (2013). Long-term stability of acute and transient psychotic disorders. The Australian & New Zealand Journal of Psychiatry, 47(1), 59-64. https://doi.org/10.1177/0004867412461692

Castagnini, A., Foldager, L. & Bertelsen, A. (2013). Excess mortality of acute and transient psychotic disorders: comparison with bipolar affective disorder and schizophrenia. Acta Psychiatrica Scandinavica, 128(5), 370-375. https://doi.org/10.1111/acps.12077

Castagnini, A. & Foldager, L. (2013). Variations in incidence rates and age of onset of acute and transient psychotic disorders. Social Psychiatry and Psychiatric Epidemiology, 48(12), 1917-1922. https://doi.org/10.1007/s00127-013-0726-7

Castagnini, A. & Foldager, L. (2014). Epidemiology, course and outcome of acute polymorphic psychotic disorder: implications for ICD-11. Psychopathology, 47(3), 202-206. https://doi.org/10.1159/000357784

Castagnini, A., Foldager, L., Caffo, E. & Thomsen, P. H. (2016). Early-adult outcome of child and adolescent mental disorders as evidenced by a national-based case register survey. European Psychiatry, 38, 45-50. https://doi.org/10.1016/j.eurpsy.2016.04.005

Castagnini, A., Foldager, L. & Berrios, G. E. (2018). Acute polymorphic psychotic disorder: concepts, empirical findings and challenges for ICD-11. Journal of Nervous and Mental Disease, 206(11), 887-895. https://doi.org/10.1097/NMD.0000000000000882

Castagnini, A., Foldager, L., Caffo, E. & Berrios, G. E. (2022). The predictive validity and outcome of ICD-10 and DSM-5 short-lived psychotic disorders: a review and meta-analysis. European Archives of Psychiatry and Clinical Neuroscience, 272(7), 1157-1168. https://doi.org/10.1007/s00406-021-01356-7

Carlsvig, A. D., Foldager, L., Steenfeldt, S., Højberg, O., Nørskov, N. & Sørensen, M. T. (2022). Performance and mineral status of laying hens fed diets with different levels of glyphosate. Livestock Science, 264, Article 105046. https://doi.org/10.1016/j.livsci.2022.105046

Carlevaro-Fita, J., Lanzós, A., Feuerbach, L., Hong, C., Mas-Ponte, D., Pedersen, J. S., PCAWG Drivers and Functional Interpretation Group, Johnson, R. & PCAWG Consortium (2020). Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis. Communications Biology, 3(1), Article 56. https://doi.org/10.1038/s42003-019-0741-7

Caprani, O., Fredslund, J., Jacobsen, J., Kramhøft, L., Lunding, R. B., Ilsø, J. M. & Wahlberg, M. (2003). Evolution of Computer Bugs – an Interdisciplinary Team Work. In K. H. Madsen & L. Qvortrup (Eds.), Behind the Scenes of Multimedia Production (pp. 186-215). Springer.

Capion, N., Raundal, P., Foldager, L. & Thomsen, P. T. (2021). Status of claw recordings and claw health in Danish dairy cattle from 2013 to 2017. The Veterinary Journal, 277, Article 105749. https://doi.org/10.1016/j.tvjl.2021.105749

Cañamero, L. D. & Fredslund, J. (2001). How Does It Feel? Emotional Interaction with a Humanoid LEGO Robot. In K. Dautenhahn (Ed.), Socially Intelligent Agents: The Human in the Loop. Papers from the AAAI 2000 Fall Symposium in Cape Cod, Massachusetts, USA (pp. 23-28). AAAI Press.

Cabrejas-Olalla, A., Jørgensen, F. G., Cheng, J. Y., Kjærgaard, P. C., Schierup, M. H., Mailund, T. & Athanasiadis, G. (2025). Genetic predictions of eye and hair colour in the Danish population. Forensic Science International: Genetics, 78, Article 103267. https://doi.org/10.1016/j.fsigen.2025.103267

Buttenschøn, H. N., Elfving, B., Foldager, L., Plougmann, P. H., Andersen, J. H., Bonde, J. P., Grynderup, M., Hansen, A. M., Kolstad, H., Kærgaard, A., Kærlev, L., Mikkelsen, S., Thomsen, J. F., Børglum, A., Wegener, G. & Mors, O. (2011). Depression og Val66Met polymorfien påvirker serum BDNF niveauet. Poster session presented at Psykiatriens 6. Forskningsdag, Risskov, Denmark.

Buttenschøn, H. N., Flint, T. J., Foldager, L., Qin, P., Christoffersen, S., Hansen, N. F., Kristensen, I. B., Mortensen, P. B., Børglum, A. D. & Mors, O. (2013). An association study of suicide and candidate genes in the serotonergic system. Journal of Affective Disorders, 148(2-3), 291-8. https://doi.org/10.1016/j.jad.2012.12.011

Buttenschøn, H. N., Elfving, B., Foldager, L., Plougmann, P. H., Andersen, J. H., Grynderup, M. B., Kærgaard, A., Hansen, Å. M., Kolstad, H. A., Kærlev, L., Bonde, J. P., Mikkelsen, S., Thomsen, J. F., Børglum, A., Wegener, G. & Mors, O. (2013). Depression and BMI influences the serum vascular endothelial growth factor level. Poster session presented at XXIst World Congress of Psychiatric Genetics, Boston, United States.

Buttenschøn, H. N., Foldager, L., Elfving, B., Poulsen, P. H. P., Uher, R. & Mors, O. (2014). Neurotrophic factors in depression in response to treatment.

Buttenschøn, H. N., Foldager, L., Elfving, B., Plougmann, P. H., Uher, R. & Mors, O. (2015). Neurotrophic factors in depression in response to treatment. Journal of Affective Disorders, 183, 287-94.

Bulik, C. M., Thornton, L. M., Parker, R., Kennedy, H., Baker, J. H., MacDermod, C., Guintivano, J., Cleland, L., Miller, A. L., Harper, L., Larsen, J. T., Yilmaz, Z., Grove, J., Sullivan, P. F., Petersen, L. V., Jordan, J., Kennedy, M. A. & Martin, N. G. (2021). The Eating Disorders Genetics Initiative (EDGI): study protocol. BMC Psychiatry, 21(1), Article 234. https://doi.org/10.1186/s12888-021-03212-3

Buggiotti, L., Cheng, Z., Salavati, M., Wathes, D. C. & GplusE Consortium (2021). Comparison of the transcriptome in circulating leukocytes in early lactation between primiparous and multiparous cows provides evidence for age-related changes. BMC Genomics, 22(1), 1-17. Article 693. https://doi.org/10.1186/s12864-021-07977-5

Buggiotti, L., Cheng, Z., Wathes, D. C., GplusE Consortium & Ingvartsen, K. L. (2020). Mining the unmapped reads in bovine RNA-Seq data reveals the prevalence of bovine herpes virus-6 in European dairy cows and the associated changes in their phenotype and leucocyte transcriptome. Viruses, 12(12), Article 1451. https://doi.org/10.3390/v12121451

Buchholtz, P. E., Ashkanian, M., Hjerrild, S., Hauptmann, L. K., Devantier, T. A., Jensen, P., Wissing, S., Thorgaard, M., Bjerager, L., Saugberg, J. L., Alrø, A., Speed, M., Brund, R. B. K. & Videbech, P. (2020). Low frequency rTMS inhibits the anti-depressive effect of ECT: A pilot study. Acta Neuropsychiatrica, 32(6), 328-338. https://doi.org/10.1017/neu.2020.28

Brown, P. E., Christensen, O. F., Clough, H. E., Diggle, P. J., Hart, C. A., Hazel, S., Kemp, R., Leatherbarrow, A. J. H., Moore, A., Sutherst, J., Turner, J., Williams, N. J., Wright, E. J. & French, N. P. (2004). The frequency and spatial distribution of environmental campylobacter spp. Applied Environmental Microbiology, 70, 6501-6511.

Brodersen, D. E., Bendtsen, K. L., Xu, K., Luckmann, M., Winther, K., Shah, S. A. & Pedersen, C. N. S. (2017). Discrete Structural Dynamics of Pseudo-Palindromic Motifs Control DNA Binding of Bacterial Toxin-Antitoxin Complexes. F A S E B Journal, 31(No. 1 supplement), Article 777.2. http://www.fasebj.org/doi/abs/10.1096/fasebj.31.1_supplement.777.2

Brodal, G. S., Fagerberg, R. & Pedersen, C. N. S. (2003). Computing the Quartet Distance Between Evolutionary Trees in Time O(n log n). Algorithmica, 38(2), 377-395. https://doi.org/10.1007/s00453-003-1065-y

Brodal, G. S., Lyngsø, R. B., Östlin, A. & Pedersen, C. N. S. (2002). Solving the String Statistics Problem in Time O(n log n). In P. Widmayer, S. Eidenbenz, F. Triguero, R. Morales, R. Conejo & M. Hennessy (Eds.), Automata, Languages and Programming: 29th International Colloquium, ICALP 2002 Málaga, Spain, July 8–13, 2002 Proceedings (pp. 728-739). Springer. https://doi.org/10.1007/3-540-45465-9_62

Brodal, G. S., Fagerberg, R., Pedersen, C. N. S., Östlin, A., Orejas, F. (Ed.), Spirakis, P. G. (Ed.) & Leeuwen, J. V. (Ed.) (2001). The Complexity of Constructing Evolutionary Trees Using Experiments. In Lecture Notes In Computer Science; Vol. 2076: Proceedings of the 28th International Colloquium on Automata, Languages and Programming (2076 of Lecture Notes in Computer Science ed., Vol. 2076/2001, pp. 140-151). Springer.

Brodal, G. S., Fagerberg, R., Mailund, T., Pedersen, C. N. S. & Phillips, D. (2003). Speeding Up Neighbour-Joining Tree Construction.

Brodal, G. S., Fagerberg, R., Mailund, T., Pedersen, C. N. S. & Sand, A. (2013). Efficient Algorithms for Computing the Triplet and Quartet Distance Between Trees of Arbitrary Degree. The Annual A C M - S I A M Symposium on Discrete Algorithms. Proceedings, 24, 1814-1832. http://knowledgecenter.siam.org/0236-000098/0236-000098/1

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Palle Villesen