Publications

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Bay-Richter, C., Buttenschøn, H. N., Foldager, L., Kolstad, H. A., Kaerlev, L., Mors, O. & Wegener, G. (2014). Toxoplasma gondii seropositivity is positively associated with anxiety and burnout-syndrome. Abstract from CINP World Congress, Vancouver, Canada. https://doi.org/10.1017/S1461145714000741

Bataillon, T., Mailund, T., Thorlacius, S., Steingrimsson, E., Rafnar, T., Halldorsson, M., Calian, V. & Schierup, M. H. (2006). The effective size of the Icelandic population and the prospects for LD mapping: inference from unphased microsatellite markers. European Journal of Human Genetics, 14, 1044–1053. https://doi.org/10.1038/sj.ejhg.5201669

Bataillon, T. & Ronfort, J. (2007). Evolutionary and Ecological Genetics of Medicago truncatula. In The Medicago Handbook [On line] http://www.noble.org/MedicagoHandbook/pdf/EvolutionaryEcologicalGenetics.pdf

Bataillon, T. & Kirkpatrick, M. (2000). Inbreeding depression due to mildly deleterious mutations in finite populations: size does matter. Genetics Research, 75(1), 75-81.

Bataillon, T., David, J. L. & Schoen, D. J. (1996). Neutral genetic markers and conservation genetics: simulated germplasm collections. Genetics, 144(1), 409-17.

Bataillon, T. (2000). Estimation of spontaneous genome-wide mutation rate parameters: whither beneficial mutations? Heredity, 84 ( Pt 5), 497-501. https://doi.org/10.1046/j.1365-2540.2000.00727.x

Bataillon, T., Zhang, T. & Kassen, R. (2011). Cost of Adaptation and Fitness Effects of Beneficial Mutations in Pseudomonas fluorescens. Genetics, 189(3), 939-949. https://doi.org/10.1534/genetics.111.130468

Bataillon, T., Joyce, P. & Sniegowski, P. (2013). As it happens: current directions in experimental evolution. Biology Letters, 9(1), Article 20120945. https://doi.org/10.1098/rsbl.2012.0945

Bataillon, T. & Bailey, S. F. (2014). Effects of new mutations on fitness: insights from models and data. New York Academy of Sciences. Annals, 1320(1), 76-92. https://doi.org/10.1111/nyas.12460

Bataillon, T., Duan, J., Hvilsom, C., Jin, X., Li, Y., Skov, L., Glemin, S., Munch, K., Jiang, T., Qian, Y., Hobolth, A., Wang, J., Mailund, T., Siegismund, H. R. & Schierup, M. H. (2015). Inference of purifying and positive selection in three subspecies of chimpanzees (Pan troglodytes) from exome sequencing. Genome Biology and Evolution, 7(4), 1122-32. https://doi.org/10.1093/gbe/evv058

Bataillon, T., Galtier, N., Bernard, A., Cryer, N. H. K., Faivre, N., Santoni, S., Severac, D., Mikkelsen, T., Larsen, K., Beier, C., Sørensen, J. G., Holmstrup, M. & Ehlers, B. (2016). A replicated climate change field experiment reveals rapid evolutionary response in an ecologically important soil invertebrate. Global Change Biology, 22(7), 2370-2379. https://doi.org/10.1111/gcb.13293

Bataillon, T., Gauthier, P., Villesen, P., Santoni, S., Thompson, J. D. & Ehlers, B. K. (2022). From genotype to phenotype: Genetic redundancy and the maintenance of an adaptive polymorphism in the context of high gene flow. Evolution Letters, 6(2), 189-202. https://doi.org/10.1002/evl3.277

Bataillon, T., Ezard, T. H. G., Kopp, M. & Masel, J. (2022). Genetics of adaptation and fitness landscapes: From toy models to testable quantitative predictions. Evolution, 76(6), 1104-1107. https://doi.org/10.1111/evo.14477

Barker, J. S. F., East, P. D. & Christiansen, F. (1989). Estimation of migration from a perturbation experiment in natural populations of Drosophila buzzatii Patterson & Wheeler. Biological Journal of the Linnean Society, 37, 311-334.

Bang Jensen, B., Thorup, V. M., Foldager, L., Nielsen, K. V., Frandsen, M., Pastell, M. & Krogh, M. A. (2024). Precision fish farming in recirculated aquaculture systems - from theory to implementation. Poster session presented at 17th International Symposium on Veterinary Epidemiology and Economics, Sydney, New South Wales, Australia. https://isvee2024-c10000.eorganiser.com.au/data/clients/1/791/submissions/177854/abstract.pdf

Balslev, H., Arge, L. A., Svenning, J.-C., Schierup, M. H. & Jensen, C. S. (Eds.) (2011). Symposium on Biodiversity in the Silicon Age - Abstracts. The Royal Danish Academy of Sciences and Letters.

Bailey, S., Hinz, A. & Kassen, R. (2014). Adaptive synonymous mutations in an experimentally evolved Pseudomonas fluorescens population. Nature Communications, 5, Article 4076. https://doi.org/10.1038/ncomms5076

Bailey, S. & Bataillon, T. (2015). Can the experimental evolution programme help us elucidate the genetic basis of adaptation in nature? Molecular Ecology. https://doi.org/10.1111/mec.13378

Bailey, S. F., Blanquart, F., Bataillon, T. & Kassen, R. (2017). What drives parallel evolution? How population size and mutational variation contribute to repeated evolution. BioEssays, 39(1), 1-9. https://doi.org/10.1002/bies.201600176

Bailey, S. F., Guo, Q. & Bataillon, T. (2018). Identifying Drivers of Parallel Evolution: A Regression Model Approach. Genome Biology and Evolution, 10(10), 2801-2812. https://doi.org/10.1093/gbe/evy210

Bailey, M. H., Meyerson, W. U., Dursi, L. J., Wang, L. B., Dong, G., Liang, W. W., Weerasinghe, A., Li, S., Kelso, S., Akbani, R., Anur, P., Bailey, M. H., Buchanan, A., Chiotti, K., Covington, K., Creason, A., Ding, L., MC3 Working Group, PCAWG novel somatic mutation calling methods working group & PCAWG Consortium (2020). Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nature Communications, 11(1), Article 4748. https://doi.org/10.1038/s41467-020-18151-y

Bai, H., Guo, X., Narisu, N., Lan, T., Wu, Q., Xing, Y., Zhang, Y., Bond, S. R., Pei, Z., Zhang, Y., Zhang, D., Jirimutu, J., Zhang, D., Yang, X., Morigenbatu, M., Zhang, L., Ding, B., Guan, B., Cao, J. ... Yin, Y. (2018). Whole-genome sequencing of 175 Mongolians uncovers population-specific genetic architecture and gene flow throughout North and East Asia. Nature Genetics, 50(12), 1696–1704. https://doi.org/10.1038/s41588-018-0250-5

Bache, C., Christiansen, F., Harder, P., Rørdam, M., Smith, N. & Sneppen, K. (2011). Kvalitet i universitetsuddannelserne - forskningsbaseret undervisning: Forskningspolitisk årsmøde 2011. Det Kongelige Danske Videnskabernes Selskab.

Bache, C., Christiansen, F. B., Løkke, A., Smith, N. & Sneppen, K. (2012). Danske Universiteter 2020: Forskningspolitisk årsmøde 2012. Det Kongelige Danske Videnskabernes Selskab. http://www.royalacademy.dk/Files/Filer/PDF/hvidboger/HVIDBOG.pdf

Bach, L. A., Helvik, T. & Christiansen, F. B. (2006). The evolution of n-player cooperation—threshold games and ESS bifurcations. Journal of Theoretical Biology, 238, 426-434.

Autzen, H. E., Siuda, I., Sonntag, Y., Nissen, P., Møller, J. V. & Thøgersen, L. (2015). Regulation of the Ca(2+)-ATPase by cholesterol: A specific or non-specific effect? Molecular Membrane Biology, 32(3), 75-87. https://doi.org/10.3109/09687688.2015.1073382

Auning, J., Trabjerg, B. B., Dreier, J. W., Vilhjálmsson, B. J. & Christensen, J. (2026). Mapping the heritability of disease: a nationwide study. Nature Communications, 17(1), Article 4080. https://doi.org/10.1038/s41467-026-69991-z

Athanasiadis, G., Cheng, J. Y., Vilhjálmsson, B. J., Jørgensen, F. G., Als, T. D., Le Hellard, S., Espeseth, T., Sullivan, P. F., Hultman, C. M., Kjærgaard, P. C., Schierup, M. H. & Mailund, T. (2016). Nationwide Genomic Study in Denmark Reveals Remarkable Population Homogeneity. Genetics, 204(2), 711-722. https://doi.org/10.1534/genetics.116.189241

Athanasiadis, G., Jorgensen, F. G., Cheng, J. Y., Kjaergaard, P. C., Schierup, M. H. & Mailund, T. (2016). Spitting for Science: Danish High School Students Commit to a Large-Scale Self-Reported Genetic Study. PLoS One, 11(8), Article e0161822. https://doi.org/10.1371/journal.pone.0161822

Athanasiadis, G. (2017). Recent migration and sample representativeness in a Danish genetic study. Annals of Human Biology, 44(5), 484-486. https://doi.org/10.1080/03014460.2017.1336253

Athanasiadis, G., Speed, D., Andersen, M. K., Appel, E. V. R., Grarup, N., Brandslund, I., Jørgensen, M. E., Larsen, C. V. L., Bjerregaard, P., Hansen, T. & Albrechtsen, A. (2020). Estimating narrow-sense heritability using family data from admixed populations. Heredity, 124(6), 751-762. https://doi.org/10.1038/s41437-020-0311-2

Atashi, H., Salavati, M., De Koster, J., Crowe, M., Opsomer, G., GplusE Consortium & Hostens, M. (2020). Genome-wide association for metabolic clusters in early-lactation Holstein dairy cows. Journal of Dairy Science, 103(7), 6392-6406. https://doi.org/10.3168/jds.2019-17369

Atashi, H., Salavati, M., De Koster, J., Crowe, M., Opsomer, G., Hostens, M. & GplusE Consortium (2020). A Genome-Wide Association Study for Calving Interval in Holstein Dairy Cows Using Weighted Single-Step Genomic BLUP Approach. Animals, 10(3), 1-13. Article 500. https://doi.org/10.3390/ani10030500

Atashi, H., Salavati, M., De Koster, J., Ehrlich, J., Crowe, M., Opsomer, G., GplusE Consortium & Hostens, M. (2020). Genome‐wide association for milk production and lactation curve parameters in Holstein dairy cows. Journal of Animal Breeding and Genetics, 137(3), 292-304. https://doi.org/10.1111/jbg.12442

Atashi, H., Hostens, M. & GplusE Consortium (2021). Genetic parameters for milk urea and its relationship with milk yield and compositions in Holstein dairy cows. PLoS One, 16(6), Article e0253191. https://doi.org/10.1371/journal.pone.0253191

Asmussen, S. & Hobolth, A. (2011). Markov bridges, bisection and variance reduction. Thiele Centre, Institut for Matematiske Fag, Aarhus Universitet.

Asmussen, S. & Hobolth, A. (2012). Markov bridges, bisection and variance reduction. In L. Plaskota & H. Wozniakowski (Eds.), Monte Carlo and Quasi-Monte Carlo Methods 2010 (pp. 3-22). Springer. https://doi.org/10.1007/978-3-642-27440-4_1

Aschard, H., Vilhjálmsson, B. J., Joshi, A. D., Price, A. L. & Kraft, P. (2016). Response to Day et al. American Journal of Human Genetics, 98(2), 394-395. https://doi.org/10.1016/j.ajhg.2015.12.020

Aschard, H., Guillemot, V., Vilhjalmsson, B., Patel, C. J., Skurnik, D., Ye, C. J., Wolpin, B., Kraft, P. & Zaitlen, N. (2017). Covariate selection for association screening in multiphenotype genetic studies. Nature Genetics, 49(12), 1789-1795. https://doi.org/10.1038/ng.3975

Arunapuram, P., Edvardsson, I., Golden, M., Anderson, J. W. J., Novák, A., Sükösd, Z. & Hein, J. (2013). StatAlign 2.0: Combining statistical alignment with RNA secondary structure prediction. Bioinformatics, 29(5), 654-655. https://doi.org/10.1093/bioinformatics/btt025

Generation Scotland & Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium (2018). Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder. PLoS One, 13(12), Article e0209160. https://doi.org/10.1371/journal.pone.0209160

Antaki, D., Guevara, J., Maihofer, A. X., Klein, M., Gujral, M., Grove, J., Carey, C. E., Hong, O., Arranz, M. J., Hervas, A., Corsello, C., Vaux, K. K., Muotri, A. R., Iakoucheva, L. M., Courchesne, E., Pierce, K., Gleeson, J. G., Robinson, E. B., Nievergelt, C. M. & Sebat, J. (2022). A phenotypic spectrum of autism is attributable to the combined effects of rare variants, polygenic risk and sex. Nature Genetics, 54(9), 1284-1292. https://doi.org/10.1038/s41588-022-01064-5

Antaki, D., Guevara, J., Maihofer, A. X., Klein, M., Gujral, M., Grove, J., Carey, C. E., Hong, O., Arranz, M. J., Hervas, A., Corsello, C., Vaux, K. K., Muotri, A. R., Iakoucheva, L. M., Courchesne, E., Pierce, K., Gleeson, J. G., Robinson, E. B., Nievergelt, C. M. & Sebat, J. (2022). Publisher Correction: A phenotypic spectrum of autism is attributable to the combined effects of rare variants, polygenic risk and sex. Nature Genetics, 54(8), Article 1259. https://doi.org/10.1038/s41588-022-01145-5

Andreasen, V. & Christiansen, F. (1989). Persistence of an infectious disease in a subdivided population. Mathematical Biosciences, 96, 239-253.

Anderson, J. WJ., Tataru, P. C., Stains, J., Hein, J. & Lyngsø, R. (2012). Evolving stochastic context-free grammars for RNA secondary structure prediction. BMC Bioinformatics, 13(78). https://doi.org/10.1186/1471-2105-13-78

Anderson, J. W. J., Haas, P. A., Mathieson, L.-A., Volynkin, V., Lyngsø, R., Tataru, P. & Hein, J. (2013). Oxfold: Kinetic Folding of RNA using Stochastic Context-Free Grammars and Evolutionary Information. Bioinformatics, 29(6), 704-710. https://doi.org/10.1093/bioinformatics/btt050

Anderson, J. W., Novák, A., Sükösd, Z., Golden, M., Arunapuram, P., Edvardsson, I. & Hein, J. (2013). Quantifying variances in comparative RNA secondary structure prediction. BMC Bioinformatics, 14, Article 149. https://doi.org/10.1186/1471-2105-14-149

Andersen, E. S., Rosenblad, M. A., Larsen, N., Westergaard, J. C., Burks, J., Wower, I. K., Wower, J., Gorodkin, J., Samuelsson, T. & Zwieb, C. (2006). The tmRDB and SRPDB resources. Nucleic Acids Res. , 34(Database issue), D163-8.

Andersen, C. L., Wiuf, C., Kruhøffer, M., Korsgaard, M., Laurberg, S. & Ørntoft, T. F. (2007). Frequent occurrence of uniparental disomy in colorectal cancer. Carcinogenesis, 28(1), 38-48. https://doi.org/10.1093/carcin/bgl086

Andersen, L. N. & Asmussen, S. (2008). Parallel computing, failure recovery and extreme values. Journal of Statistical Theory and Practice, 2(2), 279-292.

Displaying results 1301 to 1350 out of 1410

Revised 13.01.2026

Palle Villesen