Publications

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Foldager, L., Thorup, V. M., Pastell, M., Frandsen, M., Jensen, B. B. & Krogh, M. A. (2024). IntelliRAS - some results from a project on precision fish farming in recirculation aquaculture systems. In Book of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (pp. 284-284). Article Session 14; Theatre 11 Wageningen Academic Publishers.

Foldager, L. (2025). FAIR data and Open Science: some insights from a work package in the PIGWEB project. In P. Linde (Ed.), Symposium i Anvendt Statistik 2025 (pp. 49-54). Økonomisk Institut og Klinisk Institut, Syddansk Universitet & Symposium i Anvendt Statistik. http://www.statistiksymposium.dk/Symposium%202025%20hele%20bogen%20(10%20MB).pdf

Foldager, L. (2014). A statistical perspective on association studies of psychiatric disorders: Genetic effects of single-markers, haplotypes, gene-environment interactions and gene-gene interactions.

Foldager, L., Lindgren, S. D., Gebreyesus, G. & Thodberg, K. (2026). Halevækst for ukuperede og kuperede svin fra fødsel til slagt: var den kuperet kortere end lovgivningen tillader? In P. Linde (Ed.), Symposium i Anvendt Statistik 2026 (pp. 184-193). Fødevare- og Ressourceøkonomisk Institut, Københavns Universitet & Symposium i Anvendt Statistik.

Finucane, H. K., Reshef, Y. A., Anttila, V., Slowikowski, K., Gusev, A., Byrnes, A., Gazal, S., Loh, P.-R., Lareau, C., Shoresh, N., Genovese, G., Saunders, A., Macosko, E., Pollack, S., Brainstorm Consortium, Perry, J. R. B., Buenrostro, J. D., Bernstein, B. E., Raychaudhuri, S. ... Price, A. L. (2018). Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types. Nature Genetics, 50(4), 621-629. https://doi.org/10.1038/s41588-018-0081-4

Finster, K., Wang, T., Borchsenius, F. & Christiansen, F. B. (Eds.) (2016). Evolutionsbiologiske milepæle. (1 ed.) Aarhus Universitetsforlag.

Feyera, T., Pedersen, T. F., Larsen, U. K., Foldager, L. & Theil, P. K. (2018). Impact of sow energy status during farrowing on farrowing kinetics, frequency of stillborn piglets, and farrowing assistance: Sow energy status and farrowing kinetics. Journal of Animal Science, 96(6), 2320–2331. Article 96. https://doi.org/10.1093/jas/sky141

Feng, S., Bai, M., Rivas-González, I., Li, C., Liu, S., Tong, Y., Yang, H., Chen, G., Xie, D., Sears, K. E., Franco, L. M., Gaitan-Espitia, J. D., Nespolo, R. F., Johnson, W. E., Yang, H., Brandies, P. A., Hogg, C. J., Belov, K., Renfree, M. B. ... Zhang, G. (2022). Incomplete lineage sorting and phenotypic evolution in marsupials. Cell, 185(10), 1646-1660.e18. https://doi.org/10.1016/j.cell.2022.03.034

Feliu, E., Knudsen, M., Wiuf, C. H. & Andersen, L. N. (2010). An Algebraic Approach to Signaling Cascades with n Layers. Poster session presented at The 11th International Conference on Systems Biology, Edinburgh, United Kingdom.

Feliu, E., Knudsen, M., Andersen, L. N. & Wiuf, C. H. (2011). An Algebraic Approach to Signaling Cascades with n Layers. Bulletin of Mathematical Biology, 74(1), 45-72. https://doi.org/10.1007/s11538-011-9658-0

Feliu, E., Knudsen, M. & Wiuf, C. H. (2012). Signaling Cascades: Consequences of Varying Substrate and Phosphatase Levels. Advances in Experimental Medicine and Biology, 736, 81-94. https://doi.org/10.1007/978-1-4419-7210-1_4

Feliu, E. & Wiuf, C. H. (2012). Enzyme-sharing as a cause of multi-stationarity in signalling systems. Journal of the Royal Society. Interface, 9(71), 1224-1232. https://doi.org/10.1098/rsif.2011.0664

Feldman, M. W., Otto, S. P. & Christiansen, F. B. (2000). Genes, Culture and Inequality. In K. Arrow, S. Bowles & S. Durlauf (Eds.), Meritocracy and Economic Inequality (pp. 61–85). Princeton University Press.

Feldman, M. W., Otto, S. P. & Christiansen, F. (1996). Population genetic perspectives on the evolution of recombination. Annual Review of Genetics, 49, 261-295.

Feldman, M., Christiansen, F. & Holsinger, K. (1984). The evolution of self-pollination in plants. American Naturalist, 124, 446–453.

Feldman, M. & Christiansen, F. (1984). Population genetic theory of the cost of inbreeding. American Naturalist, 123, 642–653.

Feldman, M. W., Christiansen, F. & Liberman, U. (1983). On some models of fertility selection. Genetics, 105, 1003-1010.

Feldman, M. W., Christiansen, F. & Brooks, L. (1980). Evolution of recombination in a constant environmen. Proceedings of the National Academy of Sciences (PNAS), 77, 4838-4841.

Feldman, M. W., Christiansen, F. B. & Otto, S. P. (2013). Gene-culture co-evolution: teaching, learning, and correlations between relatives. Israel Journal of Ecology and Evolution, 59(2), 72-91. https://doi.org/10.1080/15659801.2013.853435

Fei, G., Luo, Y., Li, S., Li, J., Lin, L., Nielsen, A. L., Sørensen, C. B., Vajta, G., Wang, J., Zhang, X., Du, Y., Yang, H. & Bolund, L. (2011). Comparison of gene expression and genome-wide DNA methylation profiling between phenotypically normal cloned pigs and conventionally bred controls. PLoS One, 6(10), e25901. https://doi.org/10.1371/journal.pone.0025901

Fechete, L. I., Larking, A. C., Heslop, A., Hannaford, R., Anderson, C. B., Hong, W., Prakash, S., Mace, W., Alikhani, S., Hofmann, R. W., Tausen, M., Schierup, M. H., Andersen, S. U. & Griffiths, A. G. (2024). Harnessing cold adaptation for postglacial colonisation: Galactinol synthase expression and raffinose accumulation in a polyploid and its progenitors. Plant, Cell & Environment, 47(10), 4014-4030. https://doi.org/10.1111/pce.15009

Fan, R., Gu, Z., Guang, X., Marín, J. C., Varas, V., González, B. A., Wheeler, J. C., Hu, Y., Li, E., Sun, X., Yang, X., Zhang, C., Gao, W., He, J., Munch, K., Corbett-Detig, R., Barbato, M., Pan, S., Zhan, X. ... Dong, C. (2020). Genomic analysis of the domestication and post-Spanish conquest evolution of the llama and alpaca. Genome Biology, 21(1), Article 159. https://doi.org/10.1186/s13059-020-02080-6

Faber, A. H., Bataillon, T. & Ehlers, B. K. (2026). Climate-Driven Convergence of Chemical Ecotypes in Mediterranean Lamiaceae. Journal of Biogeography, 53(5), Article e70247. https://doi.org/10.1111/jbi.70247

Ewens, W. E., Choudhury, A. R., Lewontin, R. C. & Wiuf, C. (2007). Two variance results in population genetics theory. Math Popul Stud, 14, 93-110. https://doi.org/10.1080/08898480701298376

Ettema, J., Krogh, M. A., Østergaard, S. & GplusE Consortium (2020). Economic value of information from an alert system on physiological imbalance in fresh cows. Preventive Veterinary Medicine, 181, Article 105039. https://doi.org/10.1016/j.prevetmed.2020.105039

Eskildsen, S., Justesen, J., Schierup, M. H. & Hartmann, R. (2003). Characterization of the 2′-5′-oligoadenylate synthetase ubiquitin-like family. Nucl. Acids Res., 31, 3166-3173.

Eskildsen, S., Justesen, J., Schierup, M. H. & Hartmann, R. (2003). Characterization of the 2'-5'-oligoadenylate synthetase ubiquitin-like family. Nucleic Acids Research, 31(12), 3166-3173.

Eskildsen, S. J., Hansen, C. A., Kallemose, T., Curtis, D. J., Wessel, I. & Poulsen, I. (2024). Factors Associated With Time to Decannulation in Patients With Tracheostomy Following Severe Traumatic Brain Injury. Respiratory Care, 69(5), 566-574. https://doi.org/10.4187/respcare.11376

Ernst, E. H., Grøndahl, M. L., Grund, S., Hardy, K., Heuck, A., Sunde, L., Franks, S., Andersen, C. Y., Villesen, P. & Lykke-Hartmann, K. (2017). Dormancy and activation of human oocytes from primordial and primary follicles: molecular clues to oocyte regulation. Human Reproduction, 32(8), 1684-1700. https://doi.org/10.1093/humrep/dex238

Ernst, E. H., Franks, S., Hardy, K., Villesen, P. & Lykke-Hartmann, K. (2018). Granulosa cells from human primordial and primary follicles show differential global gene expression profiles. Human Reproduction, 33(4), 666-679. https://doi.org/10.1093/humrep/dey011

Ernst, E. H., Nielsen, J., Ipsen, M. B., Villesen, P. & Lykke-Hartmann, K. (2018). Transcriptome analysis of long non-coding RNAs and genes encoding paraspeckle proteins during human ovarian follicle development. Frontiers in Cell and Developmental Biology, 6(78), Article 78. https://doi.org/10.3389/fcell.2018.00078

Ernst, M., Rogers, S., Lausten-Thomsen, U., Bjorkbom, A., Laursen, S. S., Courraud, J., Borglum, A., Nordentoft, M., Werge, T., Mortensen, P. B., Hougaard, D. M. & Cohen, A. S. (2021). Gestational age-dependent development of the neonatal metabolome. Pediatric Research, 89(6), 1396-1404. https://doi.org/10.1038/s41390-020-01149-z

Emily, M., Mailund, T., Hein, J., Schauser, L. & Schierup, M. H. (2009). Using biological networks to search for interacting loci in genomewide association studies. European Journal of Human Genetics. https://doi.org/10.1038/ejhg.2009.15

Elfving, B., Buttenschøn, H. N., Foldager, L., Poulsen, P. H. P., Andersen, J. H., Grynderup, M. B., Hansen, A. M., Kolstad, H. A., Kaerlev, L., Mikkelsen, S., Thomsen, J. F., Børglum, A. D., Wegener, G. & Mors, O. (2012). Depression, the Val66Met polymorphism, age, and gender influence the serum BDNF level. Journal of Psychiatric Research, 46(9), 1118-1125. https://doi.org/10.1016/j.jpsychires.2012.05.003

Einer-Jensen, K., Ahrens, P., Forsberg, R. & Lorenzen, N. (2004). Evolution of the fish rhabdovirus viral haemorrhagic septicaemia virus. Journal of General Virology, 85(5), 1167-1179.

Eickhardt, E. A., Als, T. D., Mattheisen, M., Hauberg, M. E., Grove, J., Børglum, A. & Lescai, F. (2015). Genome-Wide Landscape of Genetic Variation with a Functional Impact on Predicted Binding Activity of Transcription Factor Binding Sites. Poster session presented at ESHG 2015, Glasgow, United Kingdom.

Ehlers, B., Maurice, S. & Bataillon, T. (2005). Sex inheritance in gynodioecious species: a polygenic view. Proceedings of the Royal Society B: Biological Sciences, 272, 1795 - 1802.

Ehlers, B. & Bataillon, T. (2007). ‘Inconstant males' and the maintenance of labilesex expression in subdioecious plants. New Phytologist. https://doi.org/10.1111/j.1469-8137.2007.01975.x

Ehlers, B. & Schierup, M. H. (2008). When gametophytic self-incompatibility meets gynodioecy. Genetics Research, 90(1), 27-35. https://doi.org/10.1017/S0016672307009007

Ehlers, B. K., Grøndahl, E., Ronfort, J. & Bataillon, T. (2012). "Ménage à trois": the presence/absence of thyme shapes the mutualistic interaction between the host plant Medicago truncatula (Fabaceae) and its symbiotic bacterium Sinorhizobium meliloti. Ecology and Evolution, 2(7), 1676-81. https://doi.org/10.1002/ece3.270

Ehlers, B. & Bataillon, T. (2014). På forkant med selektionen. Evolution2. Weekendavisen.

Ehlers, B., Holmstrup, M., Schmidt, I. K., Sørensen, J. G. & Bataillon, T. (2018). Joint impact of competition, summer precipitation, and maternal effects on survival and reproduction in the perennial Hieracium umbellatum. Evolutionary Ecology, 32(5), 529-545. https://doi.org/10.1007/s10682-018-9953-4

Ehlers, B., Bataillon, T. & Damgaard, C. (2021). Ongoing decline in insect-pollinated plants across Danish grasslands. Biology Letters, 17(11), Article 20210493. https://doi.org/10.1098/rsbl.2021.0493

Dybdahl Krebs, M., Georgii Hellberg, K. L., Lundberg, M., Appadurai, V., Ohlsson, H., Pedersen, E., Steinbach, J., Matthews, J., Border, R., LaBianca, S., Calle, X., Meijsen, J. J., Ingason, A., Buil, A., Vilhjálmsson, B. J., Flint, J., Bacanu, S. A., Cai, N., Dahl, A. ... iPSYCH Study Consortium (2024). Genetic liability estimated from large-scale family data improves genetic prediction, risk score profiling, and gene mapping for major depression. American Journal of Human Genetics, 111(11), 2494-2509. https://doi.org/10.1016/j.ajhg.2024.09.009

Dutheil, J. & Boussau, B. (2008). Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs. BMC Evolutionary Biology, 8, 255. https://doi.org/10.1186/1471-2148-8-255

Dutheil, J. (2008). Detecting site-specific biochemical constraints through substitution mapping. Journal of Molecular Evolution, 67(3), 257-65. https://doi.org/10.1007/s00239-008-9139-8

Dutheil, J., Ganapathy, G., Hobolth, A., Mailund, T., Uyenoyama, M. & Schierup, M. H. (2009). Ancestral population genomics: the coalescent hidden Markov model approach. Genetics, 183(1), 259–274. https://doi.org/10.1534/genetics.109.103010

Dutheil, J. Y., Munch, K., Nam, K., Mailund, T. & Schierup, M. H. (2015). Strong Selective Sweeps on the X Chromosome in the Human-Chimpanzee Ancestor Explain Its Low Divergence. PLoS Genetics, 11(8), e1005451. https://doi.org/10.1371/journal.pgen.1005451

Duszynska, D., Vilhjalmsson, B., Castillo Bravo, R., Swamidatta, S., Juenger, T. E., Donoghue, M. T. A., Comte, A., Nordborg, M., Sharbel, T. F., Brychkova, G., McKeown, P. C. & Spillane, C. (2019). Transgenerational effects of inter-ploidy cross direction on reproduction and F2 seed development of Arabidopsis thaliana F1 hybrid triploids. Plant Reproduction, 32(3), 275-289. https://doi.org/10.1007/s00497-019-00369-6

Duelund, N., Nisted, I., Jørgensen, M. E., Heegaard, S. & Jensen, H. (2025). Visual profiling and vision screening of preschool children in Greenland. International journal of circumpolar health, 84(1), Article 2489194. https://doi.org/10.1080/22423982.2025.2489194

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Palle Villesen