Publications

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Braïda, B., Thøgersen, L., Wu, W. & Hiberty, P. C. (2002). Stability, Metastability, and Unstability of Three-Electron-Bonded Radical Anions. A Model ab Initio Theoretical Study. Journal of the American Chemical Society, 124, 11781-11790.

Børsting, C. F., Lashkari, S., Weisbjerg, M. R. & Foldager, L., (2022). Notat vedr. tildeling af fedt til malkekøer i tidlig laktation belyst ved en meta-analyse af resultater fra litteraturen samt gennemgang af andre forhold vedr. fodring af malkekøer med tilskudsfedt, No. 2021-0244527, 11 p., Mar 04, 2022. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Borisov, A. Y., Madsen, L. H., Tsyganov, V. E., Umehara, Y., Voroshilova, V. A., Batagov, A. O., Sandal, N. N., Mortensen, A., Schauser, L., Ellis, N., Tikhonovich, I. A. & Stougaard, J. (2003). The Sym35 gene required for root nodule development in Pisum sativum is an ortholog of Nin from Lotus japonicus. Plant Physiology, 131, 1009-1017.

Børglum, A. D., Demontis, D., Grove, J., Pallesen, J., Hollegaard, M. V., Pedersen, C. B., Hedemand, A., Mattheisen, M., Uitterlinden, A., Nyegaard, M., Orntoft, T., Wiuf, C., Didriksen, M., Nordentoft, M., Nöthen, M. M., Rietschel, M., Ophoff, R. A., Cichon, S., Yolken, R. H. ... GROUP Investigators (2014). Genome-wide study of association and interaction with maternal cytomegalovirus infection suggests new schizophrenia loci. Molecular Psychiatry, Mar;19(3), 325-33. https://doi.org/10.1038/mp.2013.2

Borbye-Lorenzen, N., Zhu, Z., Agerbo, E., Albiñana, C., Benros, M. E., Bian, B., Børglum, A. D., Bulik, C. M., Debost, J.-C. P. G., Grove, J., Hougaard, D. M., McRae, A. F., Mors, O., Mortensen, P. B., Musliner, K. L., Nordentoft, M., Petersen, L. V., Privé, F., Sidorenko, J. ... McGrath, J. J. (2023). The correlates of neonatal complement component 3 and 4 protein concentrations with a focus on psychiatric and autoimmune disorders. Cell Genomics, 3(12), 100457. Article 100457. https://doi.org/10.1016/j.xgen.2023.100457

Boni, M. F., Gog, J. R., Andreasen, V. & Christiansen, F. B. (2004). Influenza drift and epidemic size: the race between generating and escaping immunity. Theoretical Population Biology, 65, 179-191.

Bolvig, A. K., Nørskov, N., Hedemann, M. S., Foldager, L., McCarthy-Sinclair, B., Marco, M., Lærke, H. N. & Knudsen, K. E. B. (2017). The effect of antibiotics and diet on enterolactone concentration and metabolome studied by targeted and non-targeted LC-MS metabolomics. Journal of Proteome Research, 16(6), 2135-2150. https://doi.org/10.1021/acs.jproteome.6b00942

Bolvig, A. K., Nørskov, N., van Vliet, S., Foldager, L., Curtasu, M. V., Hedemann, M. S., Sørensen, J. F., Lærke, H. N. & Knudsen, K. E. B. (2017). Rye bran modified with cell wall-degrading enzymes influences the kinetics of plant lignans but not of enterolignans in multicatheterized pigs. Journal of Nutrition, 147(12), 2220-2227 . https://doi.org/10.3945/jn.117.258483

Boggs, N. A., Dwyer, K. G., Shah, P., McCulloch, A. A., Bechsgaard, J., Schierup, M. H., Nasrallah, M. E. & Nasrallah, J. B. (2009). Expression of distinct self-incompatibility specificities in Arabidopsis thaliana. Genetics, 182(4), 1313-21. https://doi.org/10.1534/genetics.109.102442

Boesen, I. Z., Søgaard, T., Mygind, T., Melkova, R., Birkelund, S., Schierup, M. H. & Christiansen, G. (2002). Recombination in Mycoplasma hominis. Infection, Genetics and Evolution, 1, 277-285. http://www.elsevier.com/locate/meegid

Boel, M. & Foldager, L. (2017). Development of a predictive algorithm for a pig farming decision support system. In P. Linde (Ed.), Symposium i Anvendt Statistik (pp. 123-123)

Blokland, G. A. M., Grove, J., Chen, C. Y., Cotsapas, C., Tobet, S., Handa, R., Schizophrenia Working Group of the Psychiatric Genomics Consortium, Bipolar Disorder Working Group of the Psychiatric Genomics Consortium, Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, Sex Differences Cross-Disorder Analysis Group of the Psychiatric Genomics Consortium & iPSYCH (2022). Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders. Biological Psychiatry, 91(1), 102-117. https://doi.org/10.1016/j.biopsych.2021.02.972

Blanquart, F., Achaz, G., Bataillon, T. & Tenaillon, O. (2014). Properties of selected mutations and genotypic landscapes under Fisher's geometric model. Evolution, 68(12), 3537-54. https://doi.org/10.1111/evo.12545

Blanquart, F. & Bataillon, T. (2016). Epistasis and the Structure of Fitness Landscapes: Are Experimental Fitness Landscapes Compatible with Fisher's Geometric Model? Genetics, 203(2), 847-862. https://doi.org/10.1534/genetics.115.182691

TRACERx Consortium (2025). Ultrasensitive ctDNA detection for preoperative disease stratification in early-stage lung adenocarcinoma. Nature Medicine, 31(1), 70-76. https://doi.org/10.1038/s41591-024-03216-y

Bjerg, J. T., Boschker, H. T. S., Larsen, S., Berry, D., Schmid, M., Millo, D., Tataru, P., Meysman, F. J. R., Wagner, M., Nielsen, L. P. & Schramm, A. (2018). Long-distance electron transport in individual, living cable bacteria. Proceedings of the National Academy of Sciences (PNAS), 115(22), 5786-5791. https://doi.org/10.1073/pnas.1800367115

Bjerg, J. J., Lustermans, J. J. M., Marshall, I. P. G., Mueller, A. J., Brokjær, S., Thorup, C. A., Tataru, P., Schmid, M., Wagner, M., Nielsen, L. P. & Schramm, A. (2023). Cable bacteria with electric connection to oxygen attract flocks of diverse bacteria. Nature Communications, 14(1), Article 1614. https://doi.org/10.1038/s41467-023-37272-8

Biswas, D., Birkbak, N. J., Rosenthal, R., Hiley, C. T., Lim, E. L., Papp, K., Boeing, S., Krzystanek, M., Djureinovic, D., La Fleur, L., Greco, M., Döme, B., Fillinger, J., Brunnström, H., Wu, Y., Moore, D. A., Skrzypski, M., Abbosh, C., Litchfield, K. ... TRACERx Consortium (2019). A clonal expression biomarker associates with lung cancer mortality. Nature Medicine, 25(10), 1540-1548. https://doi.org/10.1038/s41591-019-0595-z

Biswas, D., Birkbak, N. J., Rosenthal, R., Hiley, C. T., Lim, E. L., Papp, K., Boeing, S., Krzystanek, M., Djureinovic, D., La Fleur, L., Greco, M., Döme, B., Fillinger, J., Brunnström, H., Wu, Y., Moore, D. A., Skrzypski, M., Abbosh, C., Litchfield, K. ... TRACERx Consortium (2020). Publisher Correction: A clonal expression biomarker associates with lung cancer mortality . Nature Medicine, 26(7), Article 1148. https://doi.org/10.1038/s41591-020-0899-z

Birkenkamp-Demtröder, K., Christensen, E., Nordentoft, I. K., Knudsen, M., Taber, A., Høyer, S., Lamy, P., Agerbæk, M., Jensen, J. B. & Dyrskjøt, L. (2018). Monitoring treatment response and metastatic relapse in advanced bladder cancer by liquid biopsy analysis. European Urology, 73(4), 535-540. https://doi.org/10.1016/j.eururo.2017.09.011

Birkenkamp-Demtröder, K., Christensen, E., Nordentoft, I. K., Knudsen, M., Taber, A., Høyer, S., Lamy, P., Agerbæk, M., Jensen, J. B. & Dyrskjøt, L. (2017). Liquid Biopsies for monitoring treatment response and metastatic relapse in bladder cancer patients. Poster session presented at 1st Annual Research Meeting at the Department of Clinical Medicine, Aarhus, Denmark.

Birkbak, N. J. & McGranahan, N. (2020). Cancer Genome Evolutionary Trajectories in Metastasis. Cancer Cell, 37(1), 8-19. https://doi.org/10.1016/j.ccell.2019.12.004

Binladen, J., Wiuf, C., Gilbert, MTP., Bunce, M., Barnett, R., Larson, G., Greenwood, AD., Haile, J., Ho, SYW., Hansen, AJ. & Willerslev, E. (2006). Assessing the fidelity of ancient DNA sequences amplified from nuclear genes. Genetics, 172, 733-741. https://doi.org/10.1534/genetics.105.049718

Billington, J., Gallasch, G. E., Kristensen, L. M. & Mailund (2004). Exploiting Equivalence Reduction and the Sweep-Line Method for Detecting Terminal States. IEEE Transactions on Systems, Man, and Cybernetics Part A:Systems and Humans, 34(1), 23-37.

Bethune, J., Kleppe, A. & Besenbacher, S. (2022). A method to build extended sequence context models of point mutations and indels. Nature Communications, 13(1), Article 7884. https://doi.org/10.1038/s41467-022-35596-5

Besenbacher, S., Mailund, Westh-Nielsen, L. & Pedersen, C. N. S. (2005). RBT—A Tool for Building Refined Buneman Trees. Bioinformatics, 21(8), 1711-1712.

Besenbacher, S., Mailund, T., Westh-Nielsen, L. & Pedersen, C. S. (2004). RBT -- A tool for building refined Buneman trees. Bioinformatics, doi:10.1093/bti195, in press.

Besenbacher, S., Mailund, T. & Schierup, M. H. (2008). Local Phylogeny Mapping of Quantitative Traits: Higher Accuracy and Better Ranking Than Single Marker Association in Genomewide Scans. Genetics. https://doi.org/10.1534/genetics.108.092643

Besenbacher, S., Pedersen, C. S. & Mailund, T. (2009). A fast algorithm for genome wide haplotype pattern mining. BMC Bioinformatics, (suppl. 1), 772. https://doi.org/10.1186/1471-2105-10-S1-S74

Besenbacher, S., Mailund, T. & Schierup, M. H. (2009). Local phylogeny mapping of quantitative traits: Higher accuracy and better ranking than single marker association in genomewide scans. Genetics, 181, 747-753.

Besenbacher, S., Mailund, T. & Schierup, M. H. (2012). Association mapping and disease: evolutionary perspectives. Methods in Molecular Biology, 856, 275-91. https://doi.org/10.1007/978-1-61779-585-5_11

Besenbacher, S., Liu, S., Izarzugaza, J. M. G., Grove, J., Belling, K., Bork-Jensen, J., Huang, S., Als, T. D., Li, S., Yadav, R., Rubio-García, A., Lescai, F., Demontis, D., Rao, J., Ye, W., Mailund, T., Møllegaard Friborg, R., Pedersen, C. N. S., Xu, R. ... Rasmussen, S. (2015). Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios. Nature Communications, 6, Article 5969. https://doi.org/10.1038/ncomms6969

Besenbacher, S., Hvilsom, C., Marques-Bonet, T., Mailund, T. & Schierup, M. H. (2019). Direct estimation of mutations in great apes reconciles phylogenetic dating. Nature Ecology & Evolution, 3(2), 286-292. https://doi.org/10.1038/s41559-018-0778-x

Besenbacher, S., Mailund, T., Vilhjálmsson, B. J. & Schierup, M. H. (2019). Association mapping and disease: Evolutionary perspectives. In M. Anisimova (Ed.), Evolutionary genomics: Statistical and computational methods (2 ed., pp. 533-553). Springer. https://doi.org/10.1007/978-1-4939-9074-0_17

Besenbacher, S. (2008). Challenges in whole-genome association mapping.

Bertl, J., Guo, Q., Rasmussen, M. J., Besenbacher, S., Nielsen, M. M., Hornshøj, H., Pedersen, J. S. & Hobolth, A. (2017). A Site Specific Model And Analysis Of The Neutral Somatic Mutation Rate In Whole-Genome Cancer Data. https://doi.org/10.1101/122879

Bertl, J., Guo, Q., Juul, M., Besenbacher, S., Nielsen, M. M., Hornshøj, H., Pedersen, J. S. & Hobolth, A. (2018). A site specific model and analysis of the neutral somatic mutation rate in whole-genome cancer data. BMC Bioinformatics , 19(147), Article 147. https://doi.org/10.1186/s12859-018-2141-2

Bertioli, D., Moretzsohn, M., Madsen, L., Sandal, N., Leal-Bertioli, S., Guimaraes, P., Hougaard, B., Fredslund, J., Schauser, L., Nielsen, A., Sato, S., Tabata, S., Cannon, S. & Stougaard, J. (2009). An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes. BMC Genomics, 10(1), 45. https://doi.org/10.1186/1471-2164-10-45

Bertelsen, K., Jensen, B. P., Thøgersen, L., Tajkhorshid, E., Schiøtt, H. B., Skrydstrup, T., Nielsen, N. C. & Vosegaard, T. (2009). Residue-Specific Information about the Dynamics of Antimicrobial Peptides from ¹H−¹⁵N and ²H Solid-State NMR Spectroscopy. Journal of the American Chemical Society, 131(51), 18335–18342. https://doi.org/10.1021/ja908604u

Bernatz, S., Prudente, V., Pai, S., Attermann, A. K., Cao, Y., Chen, J., Lyass, A., Foldyna, B., Nürnberg, L., Bressem, K., Abbosh, C., Swanton, C., Jamal-Hanjani, M., Lu, M. T., Murabito, J. M., Lunetta, K. L., Birkbak, N. J. & Aerts, H. J. W. L. (2026). Thymic health consequences in adults. Nature, 652(8111), 986-994. https://doi.org/10.1038/s41586-026-10242-y

Bernatz, S., Prudente, V., Pai, S., Attermann, A. K., Di Federico, A., Rowan, A., Veeriah, S., Dyrskjøt, L., Nürnberg, L., Alessi, J. V., Ott, P. A., Sharon, E., Hackshaw, A., McGranahan, N., Abbosh, C., Mak, R. H., Bitterman, D., Awad, M., Ricciuti, B. ... Aerts, H. J. W. L. (2026). Thymic health and immunotherapy outcomes in patients with cancer. Nature, 652(8111), 995-1003. https://doi.org/10.1038/s41586-026-10243-x

Bergman, J. & Schierup, M. H. (2022). Evolutionary dynamics of pseudoautosomal region 1 in humans and great apes. Genome Biology, 23, Article 215. https://doi.org/10.1186/s13059-022-02784-x

Bergman, J., Pedersen, R., Lundgren, E. J., Lemoine, R. T., Monsarrat, S., Pearce, E. A., Schierup, M. H. & Svenning, J. C. (2023). Worldwide Late Pleistocene and Early Holocene population declines in extant megafauna are associated with Homo sapiens expansion rather than climate change. Nature Communications, 14(1), Article 7679. https://doi.org/10.1038/s41467-023-43426-5

Bergman, J., Bakarić, R. & Brčić-Kostić, K. (2026). Measures of gene indispensability reveal the parallelism between phylogeny and ontogeny. BioSystems, 261, Article 105710. https://doi.org/10.1016/j.biosystems.2026.105710

Bergeron, L. A., Besenbacher, S., Schierup, M. H. & Zhang, G. (2021). Studying mutation rate evolution in primates-a need for systematic comparison of computational pipelines. GigaScience, 10(10), Article giab072. https://doi.org/10.1093/gigascience/giab072

Bergeron, L. A., Besenbacher, S., Bakker, J., Zheng, J., Li, P., Pacheco, G., Sinding, M. H. S., Kamilari, M., Gilbert, M. T. P., Schierup, M. H. & Zhang, G. (2021). The germline mutational process in rhesus macaque and its implications for phylogenetic dating. GigaScience, 10(5), Article giab029. https://doi.org/10.1093/gigascience/giab029

Bergeron, L. A., Besenbacher, S., Turner, T. N., Versoza, C. J., Wang, R. J., Price, A. L., Armstrong, E., Riera, M., Carlson, J., Chen, H. Y., Hahn, M. W., Harris, K., Kleppe, A. S., López-Nandam, E. H., Moorjani, P., Pfeifer, S. P., Tiley, G. P., Yoder, A. D., Zhang, G. & Schierup, M. H. (2022). The mutationathon highlights the importance of reaching standardization in estimates of pedigree-based germline mutation rates. eLife, 11, Article e73577. https://doi.org/10.7554/eLife.73577

Bergeron, L. A., Besenbacher, S., Zheng, J., Li, P., Bertelsen, M. F., Quintard, B., Hoffman, J. I., Li, Z., St. Leger, J., Shao, C., Stiller, J., Gilbert, M. T. P., Schierup, M. H. & Zhang, G. (2023). Evolution of the germline mutation rate across vertebrates. Nature, 615(7951), 285-291. https://doi.org/10.1038/s41586-023-05752-y

TRACERx Consortium & Genomics England Consortium (2025). ImmuneLENS characterizes systemic immune dysregulation in aging and cancer. Nature Genetics, 57(3), 694-705. Article 305. https://doi.org/10.1038/s41588-025-02086-5

Benito, B. M., Svenning, J.-C., Kellberg-Nielsen, T., Riede, F., Gil-Romera, G., Mailund, T., Kjaergaard, P. C. & Sandel, B. S. (2017). The ecological niche and distribution of Neanderthals during the Last Interglacial. Journal of Biogeography, 44(1), 51–61. https://doi.org/10.1111/jbi.12845

Displaying results 1251 to 1300 out of 1417

Revised 13.01.2026

Palle Villesen