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Section for Bioinformatics and Computational Biology

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Ravn, P., Forsberg, R. & Christiansen, F. (2007). Influenza: - menneskets uforudsigelige følgesvend. Aktuel Naturvidenskab, 2007(2), 16-20.

De Mita, S., Ronfort, J., McKhann, H. I., Poncet, C., El Malki, R. & Bataillon, T. (2007). Investigation of the demographic and selective forces shaping the nucleotide diversity of genes involved in nod factor signaling in Medicago truncatula. Genetics, 177(4), 2123-33. https://doi.org/10.1534/genetics.107.076943

Brameier, M. & Banzhaf, W. (2007). Linear Genetic Programming. Springer.

Salek, P., Høst, S., Thøgersen, L., Jørgensen, P., Manninen, P., Olsen, J., Jansik, B., Reine, S., Pawlowski, F., Tellgren, E., Helgaker, T. & Coriani, S. (2007). Linear-scaling implementation of molecular electronic self-consistent field theory. Journal of Chemical Physics, 126, 114110-1 - 114110-16.

Coriani, S., Høst, S., Jansik, B., Thøgersen, L., Olsen, J., Jørgensen, P., Reine, S., Pawlowski, F., Helgaker, T. & Salek, P. (2007). Linear-scaling implementation of molecular response theory in self-consistent field electronic-structure theory. Journal of Chemical Physics, 126(15), 154108-1 - 154108-11.

Davies, J., Simancik, F., Lyngsø, R., Mailund, T. & Hein, J. (2007). On Recombination-Induced Multiple and Simultaneous Coalescent Events. Genetics, 177, 2151-2160.

Dinér, P., Laursen, A. K. K., Lie, M. A. & Jørgensen, K. A. (2007). On the Origin of the Stereoselectivity in Organocatalysed Reactions with Trimethylsilyl-Protected Diarylprolinol. Chemistry: A European Journal, 14(1), 122-127.

Fredslund, J. & Lange, M. (2007). primique: automatic design of specific PCR primers for each sequence in a family. BMC Bioinformatics, 8(369). https://doi.org/10.1186/1471-2105-8-369

Gilbert, MTP., Binladen, J., Miller, W., Wiuf, C., Willerslev, E., Poinar, H., Carlson, JE., Leebens-Mack, JH. & Schuster, SC. (2007). Recharacterisation of ancient DNA miscoding lesions: Insights in the era of the sequencing-by-synthesis. Nucleic Acids Research, 35(1), 1-10. https://doi.org/10.1093/nar/gkl483

Li, S., Ma, L., Li, H., Vang, S., Hu, Y., Bolund, L. & Wang, J. (2007). Snap: An Integrated SNP Annotation Platform. Nucleic Acids Research, 35, D707-D710. https://doi.org/10.1093/nar/gkl969

Sørensen, F. J., Andersen, C. L. & Wiuf, C. (2007). SNPTools: A software tool for visualization and analysis of microarray data. Bioinformatics, 23(12), 1550-52. https://doi.org/10.1093/bioinformatics/btm122

Wiuf, C. & Ratmann, O. (2007). Statistical analysis of biological network data. In P. Linde (Ed.), Symposium i Anvendt Statistik 2007 (pp. 147-156)

Christensen, O. F., Frydenberg, M., Jensen, J. L. & Pedersen, J. G. (2007). Tests and confidence intervals for an extended variance component using the modified likelihood ratio statistic. Scandinavian Journal of Statistics, 34(2), 347-364. https://doi.org/10.1111/j.1467-9469.2006.00520.x

Leppälä, J., Bechsgaard, J. S., Schierup, M. H. & Savolainen, O. (2007). Transmission ratio distortion in Arabidopsis lyrata: effects of population divergence and the S-locus. Heredity, 100(1), 71-8. https://doi.org/10.1038/sj.hdy.6801066

Ewens, W. E., Choudhury, A. R., Lewontin, R. C. & Wiuf, C. (2007). Two variance results in population genetics theory. Math Popul Stud, 14, 93-110. https://doi.org/10.1080/08898480701298376

Ratmann, O., Jørgensen, O., Hinkley, T., Stumpf, M., Richardson, S. & Wiuf, C. (2007). Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum. PLoS Comp Biol, 3(e320). https://doi.org/10.1371/journal.pcbi.0030230.eor

Fredslund, J., Madsen, L. H., Hougaard, B. K., Nielsen, A. M., Nielsen, A. M., Bertioli, D., Sandal, N. N., Schauser, L. & Stougaard, J. (2006). A general pipeline for the development of anchor markers for comparative genomics in plants. BMC Genomics, 7, 207.

Wiuf, C., Brameier, M., Hagberg, O. & Stumpf, MPH. (2006). A likelihood approach to analysis of network data. Proceedings of the National Academy of Sciences (PNAS), 103(20), 7566-7570.

Mailund (2006). Analysing Infinite-State Systems by Combining Equivalence Reduction and the Sweep-Line Method. In Proceedings of International Conference on Application and Theory of Petri Nets (ICATPN 2002) (pp. 314-333)

Villesen, P. & Fredsted, T. (2006). A new sex identification tool: one primer pair can reliably sex ape and monkey DNA samples. Conservation Genetics, 1-5.

Lamy, P., Andersen, C. L., Andersen, L. D., Tørring, N., Ørntoft, T. F. & Wiuf, C. (2006). Are microRNAs located in cancer specific regions in the genome? British Journal of Cancer, 95(10), 1415-8. https://doi.org/10.1038/sj.bjc.6603381

Binladen, J., Wiuf, C., Gilbert, MTP., Bunce, M., Barnett, R., Larson, G., Greenwood, AD., Haile, J., Ho, SYW., Hansen, AJ. & Willerslev, E. (2006). Assessing the fidelity of ancient DNA sequences amplified from nuclear genes. Genetics, 172, 733-741. https://doi.org/10.1534/genetics.105.049718

Wiuf, C. & Stumpf, MPH. (2006). Binomial subsampling. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 462, 1181-1195. https://doi.org/10.1098/rspa.2005.1622

Mailund, T. (2006). CoaSim Guile Manual — Using the Guile-based CoaSim Simulator.

Schierup, M. H. (2006). Consanguinity, inbreeding, and genetic drift in Italy by LL Cavalli-Sforza, A Moroni and G Zei. Iden, 96, 336-336.

Wiuf, C. (2006). Consistency of estimators of population scaled parameters using composite likelihood. Journal of Mathematical Biology, 53, 821-841. https://doi.org/10.1007/s00285-006-0031-0

Hagberg, O. & Wiuf, C. (2006). Convergence properties of the degree distribution of some network models. Bull Math Biol, 68, 1275-1291. https://doi.org/10.1007/s11538-006-9085-9

Hansen, AJ., Mitchell, D., Wiuf, C., Paniker, L., Brand, TB., Binladen, J., Gilichinsky, DA., Rønn, R. & Willerslev, E. (2006). Crosslinks rather than Strand Breaks Determine Access to Ancient DNA Sequences from Frozen Sediments. Genetics, 173, 1175-1179. https://doi.org/10.1534/genetics.106.057349

Hougaard, B. K., Madsen, L. H., Fredslund, J., Schauser, L., Nielsen, A. M., Sandal, N. N., Rohde, T., Jacobsen, R. H., Bertioli, D. J., Tohme, J., Blair, M. & Stougaard, J. (2006). Development of Legume Anchor Markers: a bioinformatic driven tool for genetic mapping and comparative genomics. Poster session presented at 7th European Nitrogen Fixation Conference, Aarhus, Denmark.

Hougaard, B. K., Madsen, L. H., Fredslund, J., Schauser, L., Nielsen, A. M., Sandal, N. N., Rohde, T., Jacobsen, R. H., Bertioli, D. J., Tohme, J., Blair, M. & Stougaard, J. (2006). Development of Legume Anchor Markers: a bioinformatic driven tool for genetic mapping and comparative genomics. Poster session presented at Crop Genomics, Trait Analysis and Breeding, Hinxton, United Kingdom.

Hougaard, B. K., Madsen, L. H., Fredslund, J., Schauser, L., Nielsen, A. M., Sandal, N. N., Bertioli, D., Blair, M., Tohme, J. & Stougaard, J. (2006). Development of Legume Anchor Markers: a tool for genetic mapping and comparative genomics driven by bioinformatics. Poster session presented at Plant Biotech Denmark Annual meeting 2006, København, Denmark.

Herbsleb, M., Andersen, T. T., Wiuf, C. & Ørntoft, T. F. (2006). Identification of New Transcriptional Correlations in Cancer Using Array Databases and Functional In Vitro Studies , presented at PhD Annual Day, Graduate School of Health, University of Aarhus.. Poster session presented at Identification of New Transcriptional Correlations in Cancer Using Array Databases and Functional In Vitro Studies , presented at PhD Annual Day, Graduate School of Health, University of Aarhus..

Villesen, P. & Fredsted, T. (2006). Fast and non-invasive PCR sexing of primates: apes, Old World monkeys, New World monkeys and Strepsirrhines. BMC Ecology, 6(8).

Christiansen, C., Mailund, T., Pedersen, C. N. S., Randers, M. & Stissing, M. (2006). Fast Calculation of the Quartet Distance Between Trees of Arbitrary Degrees. Algorithms for Molecular Biology, 1(16).

Fredslund, J., Madsen, L. H., Hougaard, B. K., Sandal, N. N., Stougaard, J., Bertioli, D. & Schauser, L. (2006). GeMprospector - online design of cross-species genetic marker candidates in legumes and grasses. Nucleic Acids Research, 34, W670-W675.

Mailund, T., Schierup, M. H., Pedersen, C. N. S., Madsen, J. N., Hein, J. & Schauser, L. (2006). GeneRecon—A coalescent based tool for fine-scale association mapping. Bioinformatics, 22(18), 2317–2318.

Mailund, T. (2006). GeneRecon Users' Manual — A coalescent based tool for fine-scale association mapping.

Lamy, P., Andersen, C. L., Wikman, F. & Wiuf, C. (2006). Genotyping and annotation of Affymetrix SNP arrays. Nucleic Acids Research, 34(14). https://doi.org/10.1093/nar/gkl475

Mailund, T. (2006). Getting Started with Blossoc. http://www.daimi.au.dk/~mailund/Blossoc/download/getting-started-1.1.pdf

Mailund, T. & Schauser, L. (2006). Getting Started with GeneRecon — An Introduction to the Association Mapping Tool GeneRecon.

Mailund, T. (2006). Getting Started with HapCluster: An introduction to the HapCluster association mapping tool.

Jørgensen, F. G., Schierup, M. H. & Clark, A. G. (2006). Heterogeneity in Regional GC Content and Differential Usage of Codons and Amino Acids in GC-Poor and GC-Rich Regions of the Genome of Apis mellifera. Molecular Biology and Evolution. https://doi.org/10.1093/molbev/msl190

Fukai, E., Madsen, L. H., Radutoiu, E. S., Dobrowolska, A., Yost, C. K., Sandal, N. N., Schauser, L. & Stougaard, J. (2006). Identification and characterisation of LORE1 and LORE2, active retrotransposons in model legume Lotus japonicus. Poster session presented at Plant Biotech Denmark Annual meeting 2006, København, Denmark.

Fredsted, T., Wincentz, T. & Villesen, P. (2006). Introgression of mountain hare (Lepus timidus) mitochondrial DNA into wild brown hares (Lepus europaeus) in Denmark. BMC Ecology, 6(17).

Poulsen, N. A., Nielsen, E. E., Schierup, M. H., Loeschcke, V. & Grønkjær, P. (2006). Long-term stability and effective population size in North Sea and Baltic Sea cod (Gadus morhua). Molecular Ecology, 15, 321-331.

Glemin, S., Ronfort, J., Vimond, L., Bataillon, T. & Mignot, A. (2006). Marker-based investigation of inbreeding depression in the endangered species Brassica insularis. Iden, 97(4), 304-311.

Ronfort, J., Bataillon, T., Santoni, S., Delalande, M., David, J. & Prosperi, J.-M. (2006). Microsatellite diversity and broad scale geographic structure in a model legume: building a set of nested core collection for studying naturally occurring variation in Medicago truncatula. BMC Plant Biology, 6(28). https://doi.org/10.1186/1471-2229-6-28

De Mita, S., Santoni, S., Hochu, I., Ronfort, J. & Bataillon, T. (2006). Molecular evolution and positive selection of the symbiotic gene NORK in Medicago truncatula. Journal of Molecular Evolution, 62(2), 234-244.

Fredsted, T. & Villesen, P. (2006). Operation "Red Aben". Jyllands-Posten, 8-8.

Fredsted, T. & Villesen, P. (2006). Operation "Red aben". Jyllands-Posten.

Displaying results 1101 to 1150 out of 1390

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Revised 13.01.2026

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Palle Villesen