Find

Bioinformatics Research Centre

Publications

Sort by: Date | Author | Title

Fredsted, T., Schierup, M. H., Groenevald, L. F. & Kappeler, P. M. (2007). Genetic structure, lack of sex-biased dispersal and behavioral flexibility in the pair-living fat-tailed dwarf lemur, Cheirogaleus medius. Behavioral Ecology and Sociobiology. https://doi.org/10.1007/s00265-006-0323-9

Christensen, L. L., Wikman, F., Wiuf, C., Madsen, B. E., Andersen, C. L. & Ørntoft, T. F. (2007). Genetic Variants in MLH1 and MSH2 are not Associated with the Development of Sporadic Colorectal Cancer in Denmark. Poster session presented at The 2nd Biennial Scientific Meeting of the International Society for Gastrointestinal Hereditary Tumours, Yokohama, Japan.

Tørring, N., Borre, M., Sørensen, K., Andersen, C. L., Wiuf, C. & Ørntoft, T. F. (2007). Genome-Wide analysis of allelic imbalance in laser microdissected prostate cancer tissue using the Affymetrix 50K Mapping array identifies genomic patterns associated with metastasis and differentiation. British Journal of Cancer, 96(3), 499-506. https://doi.org/10.1038/sj.bjc.6603476

Hobolth, A., Christensen, O. F., Mailund, T. & Schierup, M. H. (2007). Genomic relationships and speciation times of human, chimpanzee and gorilla inferred from a coalescent hidden Markov model. P L o S Genetics, 3(2). https://doi.org/10.1371/journal.pgen.0030007

Hobolth, A., Christensen, O. F., Mailund, T. & Schierup, M. H. (2007). Genomic Relationships and Speciation Times of Human, Chimpanzee and Gorilla inferred from a Coalescent Hidden Markov Model. Poster session presented at Beyond the HapMap, Boston, United States.

Lamy, P., Andersen, C. L. & Wiuf, C. (2007). Genotyping and Annotation of Affymetrix SNP Probe Sets, presented at PhD Annual Day, Graduate School of Health, University of Aarhus.. Poster session presented at Genotyping and Annotation of Affymetrix SNP Probe Sets, presented at PhD Annual Day, Graduate School of Health, University of Aarhus..

Haudry, A., Cenci, A., Ravel, C., Bataillon, T., Brunel, D., Poncet, C., Hochu, I., Poirier, S., Santoni, S., Glemin, S. & David, J. (2007). Grinding up Wheat: a Massive Loss of Nucleotide Diversity Since Domestication. Molecular Biology and Evolution, 24(7), 1506-1517. https://doi.org/10.1093/molbev/msm077

Jørgensen, F. G., Schierup, M. H. & Clark, A. G. (2007). Heterogeneity in Regional GC Content and Differential Usage of Codons and Amino Acids in GC-Poor and GC-Rich Regions of the Genome of Apis mellifera. Molecular Biology and Evolution, 24(2), 611-619. https://doi.org/10.1093/molbev/msl190

Ehlers, B. & Bataillon, T. (2007). ‘Inconstant males' and the maintenance of labilesex expression in subdioecious plants. New Phytologist. https://doi.org/10.1111/j.1469-8137.2007.01975.x

Ravn, P., Forsberg, R. & Christiansen, F. (2007). Influenza: - menneskets uforudsigelige følgesvend. Aktuel Naturvidenskab, 2007(2), 16-20.

De Mita, S., Ronfort, J., McKhann, H. I., Poncet, C., El Malki, R. & Bataillon, T. (2007). Investigation of the demographic and selective forces shaping the nucleotide diversity of genes involved in nod factor signaling in Medicago truncatula. Genetics, 177(4), 2123-33. https://doi.org/10.1534/genetics.107.076943

Brameier, M. & Banzhaf, W. (2007). Linear Genetic Programming. Springer.

Salek, P., Høst, S., Thøgersen, L., Jørgensen, P., Manninen, P., Olsen, J., Jansik, B., Reine, S., Pawlowski, F., Tellgren, E., Helgaker, T. & Coriani, S. (2007). Linear-scaling implementation of molecular electronic self-consistent field theory. Journal of Chemical Physics, 126, 114110-1 - 114110-16.

Coriani, S., Høst, S., Jansik, B., Thøgersen, L., Olsen, J., Jørgensen, P., Reine, S., Pawlowski, F., Helgaker, T. & Salek, P. (2007). Linear-scaling implementation of molecular response theory in self-consistent field electronic-structure theory. Journal of Chemical Physics, 126(15), 154108-1 - 154108-11.

Davies, J., Simancik, F., Lyngsø, R., Mailund, T. & Hein, J. (2007). On Recombination-Induced Multiple and Simultaneous Coalescent Events. Genetics, 177, 2151-2160.

Dinér, P., Laursen, A. K. K., Lie, M. A. & Jørgensen, K. A. (2007). On the Origin of the Stereoselectivity in Organocatalysed Reactions with Trimethylsilyl-Protected Diarylprolinol. Chemistry: A European Journal, 14(1), 122-127.

Fredslund, J. & Lange, M. (2007). primique: automatic design of specific PCR primers for each sequence in a family. B M C Bioinformatics, 8(369). https://doi.org/10.1186/1471-2105-8-369

Gilbert, MTP., Binladen, J., Miller, W., Wiuf, C., Willerslev, E., Poinar, H., Carlson, JE., Leebens-Mack, JH. & Schuster, SC. (2007). Recharacterisation of ancient DNA miscoding lesions: Insights in the era of the sequencing-by-synthesis. Nucleic Acids Research, 35(1), 1-10. https://doi.org/10.1093/nar/gkl483

Li, S., Ma, L., Li, H., Vang, S., Hu, Y., Bolund, L. & Wang, J. (2007). Snap: An Integrated SNP Annotation Platform. Nucleic Acids Research, 35, D707-D710. https://doi.org/10.1093/nar/gkl969

Wiuf, C. & Ratmann, O. (2007). Statistical analysis of biological network data. In P. Linde (Ed.), Symposium i Anvendt Statistik 2007 (pp. 147-156)

Christensen, O. F., Frydenberg, M., Jensen, J. L. & Pedersen, J. G. (2007). Tests and confidence intervals for an extended variance component using the modified likelihood ratio statistic. Scandinavian Journal of Statistics, 34(2), 347-364. https://doi.org/10.1111/j.1467-9469.2006.00520.x

Leppälä, J., Bechsgaard, J. S., Schierup, M. H. & Savolainen, O. (2007). Transmission ratio distortion in Arabidopsis lyrata: effects of population divergence and the S-locus. Heredity, 100(1), 71-8. https://doi.org/10.1038/sj.hdy.6801066

Ewens, W. E., Choudhury, A. R., Lewontin, R. C. & Wiuf, C. (2007). Two variance results in population genetics theory. Math Popul Stud, 14, 93-110. https://doi.org/10.1080/08898480701298376

Ratmann, O., Jørgensen, O., Hinkley, T., Stumpf, M., Richardson, S. & Wiuf, C. (2007). Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum. PLoS Comp Biol, 3(e320). https://doi.org/10.1371/journal.pcbi.0030230.eor

Sørensen, F. J., Andersen, C. L. & Wiuf, C. (2007). SNPTools: A software tool for visualization and analysis of microarray data. Bioinformatics, 23(12), 1550-52. https://doi.org/10.1093/bioinformatics/btm122

Fredslund, J., Madsen, L. H., Hougaard, B. K., Nielsen, A. M., Nielsen, A. M., Bertioli, D., Sandal, N. N., Schauser, L. & Stougaard, J. (2006). A general pipeline for the development of anchor markers for comparative genomics in plants. B M C Genomics, 7, 207.

Wiuf, C., Brameier, M., Hagberg, O. & Stumpf, MPH. (2006). A likelihood approach to analysis of network data. Proceedings of the National Academy of Sciences, 103(20), 7566-7570.

Mailund (2006). Analysing Infinite-State Systems by Combining Equivalence Reduction and the Sweep-Line Method. In Proceedings of International Conference on Application and Theory of Petri Nets (ICATPN 2002) (pp. 314-333)

Villesen, P. & Fredsted, T. (2006). A new sex identification tool: one primer pair can reliably sex ape and monkey DNA samples. Conservation Genetics, 1-5.

Binladen, J., Wiuf, C., Gilbert, MTP., Bunce, M., Barnett, R., Larson, G., Greenwood, AD., Haile, J., Ho, SYW., Hansen, AJ. & Willerslev, E. (2006). Assessing the fidelity of ancient DNA sequences amplified from nuclear genes. Genetics, 172, 733-741. https://doi.org/10.1534/genetics.105.049718

Wiuf, C. & Stumpf, MPH. (2006). Binomial subsampling. Proceedings of the Royal Society A: Mathematical, Physical & Engineering, 462, 1181-1195. https://doi.org/10.1098/rspa.2005.1622

Mailund, T. (2006). CoaSim Guile Manual — Using the Guile-based CoaSim Simulator.

Schierup, M. H. (2006). Consanguinity, inbreeding, and genetic drift in Italy by LL Cavalli-Sforza, A Moroni and G Zei. Iden, 96, 336-336.

Wiuf, C. (2006). Consistency of estimators of population scaled parameters using composite likelihood. J Math Biol, 53, 821-841. https://doi.org/10.1007/s00285-006-0031-0

Hagberg, O. & Wiuf, C. (2006). Convergence properties of the degree distribution of some network models. Bull Math Biol, 68, 1275-1291. https://doi.org/10.1007/s11538-006-9085-9

Hansen, AJ., Mitchell, D., Wiuf, C., Paniker, L., Brand, TB., Binladen, J., Gilichinsky, DA., Rønn, R. & Willerslev, E. (2006). Crosslinks rather than Strand Breaks Determine Access to Ancient DNA Sequences from Frozen Sediments. Genetics, 173, 1175-1179. https://doi.org/10.1534/genetics.106.057349

Hougaard, B. K., Madsen, L. H., Fredslund, J., Schauser, L., Nielsen, A. M., Sandal, N. N., Rohde, T., Jacobsen, R. H., Bertioli, D. J., Tohme, J., Blair, M. & Stougaard, J. (2006). Development of Legume Anchor Markers: a bioinformatic driven tool for genetic mapping and comparative genomics. Poster session presented at 7th European Nitrogen Fixation Conference, Aarhus, Denmark.

Hougaard, B. K., Madsen, L. H., Fredslund, J., Schauser, L., Nielsen, A. M., Sandal, N. N., Rohde, T., Jacobsen, R. H., Bertioli, D. J., Tohme, J., Blair, M. & Stougaard, J. (2006). Development of Legume Anchor Markers: a bioinformatic driven tool for genetic mapping and comparative genomics. Poster session presented at Crop Genomics, Trait Analysis and Breeding, Hinxton, United Kingdom.

Hougaard, B. K., Madsen, L. H., Fredslund, J., Schauser, L., Nielsen, A. M., Sandal, N. N., Bertioli, D., Blair, M., Tohme, J. & Stougaard, J. (2006). Development of Legume Anchor Markers: a tool for genetic mapping and comparative genomics driven by bioinformatics. Poster session presented at Plant Biotech Denmark Annual meeting 2006, København, Denmark.

Herbsleb, M., Andersen, T. T., Wiuf, C. & Ørntoft, T. F. (2006). Identification of New Transcriptional Correlations in Cancer Using Array Databases and Functional In Vitro Studies , presented at PhD Annual Day, Graduate School of Health, University of Aarhus.. Poster session presented at Identification of New Transcriptional Correlations in Cancer Using Array Databases and Functional In Vitro Studies , presented at PhD Annual Day, Graduate School of Health, University of Aarhus..

Villesen, P. & Fredsted, T. (2006). Fast and non-invasive PCR sexing of primates: apes, Old World monkeys, New World monkeys and Strepsirrhines. B M C Ecology, 6(8).

Christiansen, C., Mailund, T., Pedersen, C. N. S., Randers, M. & Stissing, M. (2006). Fast Calculation of the Quartet Distance Between Trees of Arbitrary Degrees. Algorithms for Molecular Biology, 1(16).

Fredslund, J., Madsen, L. H., Hougaard, B. K., Sandal, N. N., Stougaard, J., Bertioli, D. & Schauser, L. (2006). GeMprospector - online design of cross-species genetic marker candidates in legumes and grasses. Nucleic Acids Research, 34, W670-W675.

Mailund, T., Schierup, M. H., Pedersen, C. N. S., Madsen, J. N., Hein, J. & Schauser, L. (2006). GeneRecon—A coalescent based tool for fine-scale association mapping. Bioinformatics, 22(18), 2317–2318.

Mailund, T. (2006). GeneRecon Users' Manual — A coalescent based tool for fine-scale association mapping.

Lamy, P., Andersen, C. L., Wikman, F. & Wiuf, C. (2006). Genotyping and annotation of Affymetrix SNP arrays. Nucleic Acids Research, 34(14). https://doi.org/10.1093/nar/gkl475

Mailund, T. (2006). Getting Started with Blossoc. http://www.daimi.au.dk/~mailund/Blossoc/download/getting-started-1.1.pdf

Mailund, T. & Schauser, L. (2006). Getting Started with GeneRecon — An Introduction to the Association Mapping Tool GeneRecon.

Mailund, T. (2006). Getting Started with HapCluster: An introduction to the HapCluster association mapping tool.

Jørgensen, F. G., Schierup, M. H. & Clark, A. G. (2006). Heterogeneity in Regional GC Content and Differential Usage of Codons and Amino Acids in GC-Poor and GC-Rich Regions of the Genome of Apis mellifera. Molecular Biology and Evolution. https://doi.org/10.1093/molbev/msl190

Displaying results 901 to 950 out of 1198

19

Revised 17.04.2023

-

Palle Villesen