Publications

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Bechsgaard, J. S., Castric, V., Charlesworth, D., Vekemans, X. & Schierup, M. H. (2006). The transition to self-compatibility in Arabidopsis thaliana and evolution within S-haplotypes over 10 Myr. Molecular Biology and Evolution, 23(9), 1741-1750.

Ye, J., Fang, L., Zheng, H., Zhang, Y., Chen, J., Zhang, Z., Wang, J., Li, S., Li, R., Bolund, L. & Wang, J. (2006). WEGO: a web tool for plotting GO annotations. Nucleic Acids Research, 34(Web Server issue), W293-7. https://doi.org/10.1093/nar/gkl031

Mailund, T., Besenbacher, S. & Schierup, M. H. (2006). Whole genome association mapping by incompatibilities and local perfect phylogenies. B M C Bioinformatics, 7(454). https://doi.org/10.1186/1471-2105-7-454

Lamy, P., Andersen, C. L., Andersen, L. D., Tørring, N., Ørntoft, T. F. & Wiuf, C. (2006). Are microRNAs located in cancer specific regions in the genome? British Journal of Cancer, 95(10), 1415-8. https://doi.org/10.1038/sj.bjc.6603381

Glemin, S., Ronfort, J., Vimond, L., Bataillon, T. & Mignot, A. (2006). Marker-based investigation of inbreeding depression in the endangered species Brassica insularis. Iden, 97(4), 304-311.

De Mita, S., Santoni, S., Hochu, I., Ronfort, J. & Bataillon, T. (2006). Molecular evolution and positive selection of the symbiotic gene NORK in Medicago truncatula. Journal of Molecular Evolution, 62(2), 234-244.

Schauser, L., Fredslund, J., Madsen, L. H., Sandal, N. N. & Stougaard, J. (2005). A computational pipeline towards the development of comparative anchor tagged sequence (CATS) markers. In M. O. Humphrey (Ed.), Proceedings of the International Grassland Congress (IGC) (pp. 73-81). Wageningen Academic Publishers.

Schauser, L., Subrahmanyam, S., Madsen, L. H., Sandal, N. N. & Stougaard, J. (2005). An in silico strategy towards the development of legume genome anchor markers using comparative sequence analysis. In In Márquez, A.J. ed. Lotus japonicus handbook (pp. 233-242). Springer.

Mailund , Schierup, M. H., Pedersen, C. N. S., Mechlenborg, P., Madsen, J. N. & Schauser, L. (2005). CoaSim: A Flexible Environment for Simulating Genetic Data under Coalescent Models. B M C Bioinformatics, 6(252). http://www.biomedcentral.com/1471-2105/6/252

Jørgensen, F. G., Hobolth, A., Hornshøj, H., Bendixen, C., Fredholm, M. & Schierup, M. H. (2005). Comparative analysis of protein coding sequences from Human, Mouse and the domesticated Pig. B M C Biology, 3(2). https://doi.org/10.1186/1741-7007-3-2

Nielsen, R. & Wiuf, C. (2005). Composite likelihood estimation applied to Single Nucleotide Polymorphism (SNP) data. ISI Conference Proceedings 2005.. Paper presented at Composite likelihood estimation applied to Single Nucleotide Polymorphism (SNP) data. ISI Conference Proceedings 2005..

Christiansen, C., Mailund , Pedersen, C. N. S. & Randers, M. (2005). Computing the Quartet Distance between Trees of Arbitrary Degree. In Proceedings of the 5th International Workshop on Algorithms in Bioinformatics (WABI) (pp. 77-88)

Aagaard, L. & Villesen, P. (2005). Din indre virus. Jyllands-Posten.

Schierup, M. H., Mordhorst, CH., Müller, CP. & Christensen, LS. (2005). Evidence of recombination among early-vaccination era measles virus strains. B M C Evolutionary Biology, 5(52).

Schauser, L., Wieloch, W. & Stougaard, J. (2005). Evolution of NIN-like proteins in Arabidopsis, rice and Lotus japonicus. Journal of Molecular Evolution, 60(2), 229-237. https://doi.org/10.1007/s00239-004-0144-2

Fredslund, J. (2005). Feelix. In H. Domaine (Ed.), Robotics: Cool Science Lerner Publications.

Fredsted, T. & Villesen, P. (2005). Genetik og bevaring af truede aber. Aktuel Naturvidenskab, 4, 16-19.

Fredsted, T. & Villesen, P. (2005). Genetik og bevaring af truede aber. Aktuel Naturvidenskab, (4).

Mailund, T. (2005). Getting Started with CoaSim — An Introduction to the Simulator CoaSim.

Koed, K., Wiuf, C., Christensen, L. L., Wikman, F., Zieger, K., Jensen, K. M.-E., Maase, H. V. D. & Ørntoft, T. F. (2005). High-density single nucleotide polymorphism array defines novel stage and location-dependent allelic imbalances in human bladder tumors. Cancer Research, 65(1), 34-45.

Mailund , Pedersen, C. N. S., Bardino, J., Vinter, B. & Karlsen, H. H. (2005). Initial experiences with GeneRecon on MiG. In Proceedings of The 2005 International Conference on Grid Computing and Applications (GCA)

Madsen, L. H., Fukai, E., Radutoiu, E. S., Yost, C. K., Sandal, N. N., Schauser, L. & Stougaard, J. (2005). LORE1, an active low-copy-number TY3-gypsy retrotransposon family in the model legume Lotus japonicus. Plant. J., 44, 372-381.

Fredsted, T., Schierup, M. H., Pertoldi, C. & Kappeler, M. (2005). Microsatellite analyses reveal fine-scale genetic structure in grey mouse lemurs (Microcebus murinus). Molecular Ecology, 14, 2363-2372.

Wernersson, R., Schierup, M. H., Jørgensen, F. G., Gorodkin, J., Panitz, F., Staerfeldt, HH., Christensen, O. F., Mailund, T., Hornshøj, H., Klein, A., Jun, W., Liu, B., Hu, S., Dong, W., Li, W., Wong, GK.-S., Yu, J., Wang, J., Bendixen, C. ... Bolund, L. (2005). Pigs in Sequence Space: A 0.66X Coverage Pig Genome Survey based on Shotgun Sequencing. B M C Genomics, 6(70). http://www.biomedcentral.com/1471-2164/6/70

Christiansen, F. B. (2005). Population Genetics with a view towards Bioinformatics. Lecture Notes in Molecular Population Genetics. Eget.

Fredslund, J., Schauser, L., Madsen, L. H., Sandal, N. N. & Stougaard, J. (2005). PriFi - Using a Multiple Alignment of Related Sequences to Find Primers for Amplification of Homologs. Nucleic Acids Research, 33(W), 516-520.

Christensen, O. F., Hobolth, A. & Jensen, J. L. (2005). Pseudo-likelihood analysis of codon substitution models with neighbor dependent rates. Journal of Computational Biology, 12, 1166-1182.

Christiansen, C., Mailund , Pedersen, C. N. S. & Randers, M. (2005). Quartet Distance between General Trees. In Proceedings of International Conference on Numerical Analysis and Applied Mathematics (ICNAAM) (pp. 796-799)

Besenbacher, S., Mailund, Westh-Nielsen, L. & Pedersen, C. N. S. (2005). RBT—A Tool for Building Refined Buneman Trees. Bioinformatics, 21(8), 1711-1712.

Zieger, K., Andersen, L. D., Wiuf, C., Jensen, J. L., Andersen, C. L., Jensen, K. M.-E. & Ørntoft, T. F. (2005). Role of activating fibroblast growth factor receptor 3 mutations in the development of bladder tumors. Clinical Cancer Research, 11(21), 7709-7719.

Stumpf, MPH. & Wiuf, C. (2005). Sampling properties of random graphs: The degree distribution. Physical Review E, 72(036118), 1-7.

Christensen, O. F., Roberts, G. & Rosenthal, J. (2005). Scaling limits for the transient phase of local Metropolis-Hastings algorithms. Journal of the Royal Statistical Society, Series B, 67, 253-268.

Ehlers, B., Maurice, S. & Bataillon, T. (2005). Sex inheritance in gynodioecious species: a polygenic view. Proceedings of the Royal Society B: Biological Sciences, 272, 1795 - 1802.

Stumpf, MPH., Ingram, PJ., Nouvel, I. & Wiuf, C. (2005). Statistical model selection methods applied to biological network data. Transactions on Computational Systems Biology, 3, 65-77.

Stumpf, MPH., Wiuf, C. & May, RM. (2005). Subnets of scale-free networks are not scale-free: Sampling properties of networks. Proceedings of the National Academy of Sciences, 102, 4221-4224.

Fredslund, J. & Andersen, E. S. (2005). Superjordnøddernes hemmelighed. Aktuel Naturvidenskab, (6), 12-15.

Christensen, O. F., Frydenberg, M., Jensen, J. L. & Pedersen, J. G. (2005). Tests and Confidence Intervals for an Extended Variance Component Using the Modified Likelihood Ratio Statistic.

Aagaard, L., Villesen, P., Kjeldbjerg, A. L. & Pedersen, F. S. (2005). The ~30-million-year-old ERVPb1 envelope gene is evolutionarily conserved among hominoids and Old World monkeys. Genomics, 86(6).

Schierup, M. H., Jensen, T. M. & Wiuf, C. (2005). The effect of a single recombination event. Poster session presented at Genomic Studies and the HapMap, Oxford, United Kingdom.

Thøgersen, L., Olsen, J., Köhn, A., Jørgensen, P., Salek, P. & Helgaker, T. (2005). The trust-region self-consistent field method in Kohn-Sham density-functional theory. Journal of Chemical Physics, 123, 074103-1-17.

Hein, J., Schierup, M. H. & Wiuf, C. (2005). Gene Genealogies, Variation and Evolution.

Thøgersen, L. & Olsen, J. (2004). A coupled cluster and full configuration interaction study of CN and CN^-. Chemical Physics Letters, 393, 36-43.

Pedersen, J. S., Forsberg, R., Meyer, I. M. & Hein, J. (2004). An evolutionary model for protein-coding regions with conserved RNA structure. Mol Biol Evol. Oct;21, 10, 1913-1922.

Rivas, S., Rougon-Cardoso, A., Smoker, M., Schauser, L., Yoshioka, H. & Jones, J. D. G. (2004). CITRX thioredoxin interacts with the tomato Cf-9 resistance protein and negatively regulates defence. The EMBO Journal, 23, 2156-2165.

Pedersen, J. S., Meyer, I. M., Forsberg, R., Simmonds, P. & nullJA, H. (2004). Comparative method for finding and folding RNA secondary structures within protein-coding regions. Nucleic Acids Res Sep 24, 32(16), 4925-4936.

Munkacsi, A. B., Pan, J. J., Villesen, P., Mueller, U. G., Blackwell, M. & McLaughlin, D. J. (2004). Convergent coevolution in the domestication of coral mushrooms by fungus-growing ants. Proceedings of the Royal Society B: Biological Sciences, 271(1550), 1777-1782.

Christiansen, F. B., Singh, R. S. (Ed.), Jain, S. (Ed.) & Uyenoyama, M. (Ed.) (2004). Density dependent selection. In The Evolution of Population Biology: Modern Synthesis (pp. 139-155). Cambridge University Press.

Aagaard, L. & Villesen, P. (2004). Din indre virus. Aktuel Naturvidenskab, 6, 10-13.

Aagaard, L. & Villesen, P. (2004). Din indre virus: den gode, den onde og den helt ukendte. Aktuel Naturvidenskab, (6).

Displaying results 1051 to 1100 out of 1281

Revised 21.08.2024

Palle Villesen