Publications

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Pedersen, J. S., Forsberg, R., Meyer, I. M. & Hein, J. (2004). An evolutionary model for protein-coding regions with conserved RNA structure. Mol Biol Evol. Oct;21, 10, 1913-1922.

Rivas, S., Rougon-Cardoso, A., Smoker, M., Schauser, L., Yoshioka, H. & Jones, J. D. G. (2004). CITRX thioredoxin interacts with the tomato Cf-9 resistance protein and negatively regulates defence. The EMBO Journal, 23, 2156-2165.

Pedersen, J. S., Meyer, I. M., Forsberg, R., Simmonds, P. & nullJA, H. (2004). Comparative method for finding and folding RNA secondary structures within protein-coding regions. Nucleic Acids Res Sep 24, 32(16), 4925-4936.

Munkacsi, A. B., Pan, J. J., Villesen, P., Mueller, U. G., Blackwell, M. & McLaughlin, D. J. (2004). Convergent coevolution in the domestication of coral mushrooms by fungus-growing ants. Proceedings of the Royal Society B: Biological Sciences, 271(1550), 1777-1782.

Christiansen, F. B., Singh, R. S. (Ed.), Jain, S. (Ed.) & Uyenoyama, M. (Ed.) (2004). Density dependent selection. In The Evolution of Population Biology: Modern Synthesis (pp. 139-155). Cambridge University Press.

Aagaard, L. & Villesen, P. (2004). Din indre virus. Aktuel Naturvidenskab, 6, 10-13.

Aagaard, L. & Villesen, P. (2004). Din indre virus: den gode, den onde og den helt ukendte. Aktuel Naturvidenskab, (6).

Aagaard, L. & Villesen, P. (2004). Din indre virus - den gode, den onde og den helt ukendte Morgenavisen Jyllands-Posten, Indblik, 10.

Szalay, P. G., Thøgersen, L. S., Olsen, J., Kállay, M. & Gauss, J. (2004). Equilibrium Geometry of the Ethynyl (CCH) Radical. Journal of Physical Chemistry Part A: Molecules, Spectroscopy, Kinetics, Environment and General Theory, 108, 3030-3034.

Villesen, P., Mueller, U. G., Schultz, T. R., Adams, R. M. M. & Bouck, A. C. (2004). Evolution of Ant-Cultivar Switching in Apterostigma Fungus-growing Ants. Evolution, 58, 2252-2265.

Einer-Jensen, K., Ahrens, P., Forsberg, R. & Lorenzen, N. (2004). Evolution of the fish rhabdovirus viral haemorrhagic septicaemia virus. Journal of General Virology, 85(5), 1167-1179.

Billington, J., Gallasch, G. E., Kristensen, L. M. & Mailund (2004). Exploiting Equivalence Reduction and the Sweep-Line Method for Detecting Terminal States. I E E E Transactions on Systems, Man and Cybernetics, Part A: Systems & Humans, 34(1), 23-37.

Thuillet, A.-C., Bataillon, T., Sourdille, P. & David, J. L. (2004). Factors affecting polymorphism at microsatellite loci in bread wheat [ Triticum aestivum (L.) Thell]: effects of mutation processes and physical distance from the centromere. Theoretical and Applied Genetics, 108(2), 368-77. https://doi.org/10.1007/s00122-003-1443-5

Fredsted, T. & Villesen, P. (2004). Fast, reliable sexing of prosimian DNA. American Journal of Primatology, 64, 345-350.

Fredslund, J. (2004). Feelix. In R. F. Bridgman (Ed.), Robot: Eyewitness Dorling Kindersley.

Hein, J., Schierup, M. H. & Wiuf, C. (2004). Gene genealogies, variation and evolution: A primer in coalescent theory.

Villesen, P., Aagaard, L., Wiuf, C. & Pedersen, F. S. (2004). Identification of endogenous retroviral reading frames in the human genome. Retrovirology, 1(32), 1-13. https://doi.org/10.1186/1742-4690-1-32

Wiuf, C. (2004). Inference on recombination and block structure using unphased data. Genetics, 166, 537-545.

Boni, M. F., Gog, J. R., Andreasen, V. & Christiansen, F. B. (2004). Influenza drift and epidemic size: the race between generating and escaping immunity. Theoretical Population Biology, 65, 179-191.

Christiansen, F. B. (2004). Lecture Notes in Population Genetics. Eget.

Willerslev, E., Hansen, A., Rønn, R., Brand, T. B., Barnes, I., Wiuf, C., Gilichinsky, D., Mitchell, D. & Cooper, A. (2004). Long-term persistence of bacterial DNA. Curr. Biol., 14, 9-10.

McKhann, H. I., Camilleri, C., Bérard, A., Bataillon, T., David, J. L., Reboud, X., Le Corre, V., Caloustian, C., Gut, I. G. & Brunel, D. (2004). Nested core collections maximizing genetic diversity in Arabidopsis thaliana. Plant Journal, 38(1), 193-202. https://doi.org/10.1111/j.1365-313X.2004.02034.x

Mailund, T. & Westergaard, M. (2004). Obtaining Memory-Efficient Reachability Graph Representations Using the Sweep-Line Method. In Proceedings of Tools and Algorithms for the Construction and Analysis of Systems (TACAS 2004) (pp. 177-191)

Goldringer, I. & Bataillon, T. (2004). On the distribution of temporal variations in allele frequency: consequences for the estimation of effective population size and the detection of loci undergoing selection. Genetics, 168(1), 563-8. https://doi.org/10.1534/genetics.103.025908

Mailund, T. & Pedersen, C. N. S. (2004). QDist - Quartet Distance between Evolutionary Trees. Bioinformatics, 20(10), 1636-1637.

Mailund & Pedersen, C. N. S. (2004). QDist—Quartet Distance Between Evolutionary Trees. Bioinformatics, 20(10), 1636-1637.

Mailund & Pedersen, C. N. S. (2004). QuickJoin—Fast Neighbour-Joining Tree Reconstruction. Bioinformatics, 20(17), 3261-3262.

Besenbacher, S., Mailund, T., Westh-Nielsen, L. & Pedersen, C. S. (2004). RBT -- A tool for building refined Buneman trees. Bioinformatics, doi:10.1093/bti195, in press.

Mailund, T. (2004). SplitDist—Calculating Split-Distances for Sets of Trees.

Christensen, O. F., Cassiani, G., Diggle, P. J., Ribeiro, P. J. & Andreotti, G. (2004). Statistical estimation of the relative efficiency of natural attenuation mechanisms in contaminated aquifers. Stochastic environmental research and risk assessment (SERRA), 18, 339-350.

Brown, P. E., Christensen, O. F., Clough, H. E., Diggle, P. J., Hart, C. A., Hazel, S., Kemp, R., Leatherbarrow, A. J. H., Moore, A., Sutherst, J., Turner, J., Williams, N. J., Wright, E. J. & French, N. P. (2004). The frequency and spatial distribution of environmental campylobacter spp. Applied Environmental Microbiology, 70, 6501-6511.

Rafnar, T., Thorlacius, S., Steingrimsson, E., Schierup, M. H., Madsen, J. N., Calian, V., Eldon, B. J., Jonsson, T., Hein, J. & Thorgeirsson, S. S. (2004). The Icelandic Cancer Project--a population-wide approach to studying cancer. Nat Rev Cancer Jun, 4(6), 488-492.

Wiuf, C., Zhao, K., Innan, H. & Nordborg, M. (2004). The probability and chromosomal extent of trans-specific polymorphisms. Genetics, 168, 2363-2372.

Thøgersen, L., Olsen, J., Yeager, D., Jørgensen, P., Salek, P. & Helgaker, T. (2004). The trust-region self-consistent field method: Towards a black-box optimization in Hartree-Fock and Kohn-Sham theories. Journal of Chemical Physics, 121, 16-27.

Bechsgaard, J., Bataillon, T. & Schierup, M. H. (2004). Uneven segregation of sporophytic self-incompatibility alleles in arabidopsis lyrata. Journal of Evolutionary Biology, 17(3), 554-561.

Bechsgaard, J., Bataillon, T. & Schierup, M. H. (2004). Uneven segregation of sporophytic self-incompatibility alleles in Arabidopsis lyrata. J. Evol. Biol., 17, 554-561.

Wiuf, C. & Posada, D. (2003). A coalescent model of hotspot recombination. Genetics 164: 407-417. Genetics, 164, 407-417.

Forsberg, R. & Christiansen, F. B. (2003). A codon-based model of host-specific selection in parasites, with an application to the influenza A virus. Mol. Biol. Evol., 20(8), 1252-1259.

Fredslund, J., Hein, J. & Scharling, T. (2003). A large version of the small parsimony problem. In Proceedings of the 3rd workshop on algorithms in bioinformatics (WABI 2003) (pp. 417-432)

Eskildsen, S., Justesen, J., Schierup, M. H. & Hartmann, R. (2003). Characterization of the 2'-5'-oligoadenylate synthetase ubiquitin-like family. Nucleic Acids Research, 31(12), 3166-3173.

Eskildsen, S., Justesen, J., Schierup, M. H. & Hartmann, R. (2003). Characterization of the 2′-5′-oligoadenylate synthetase ubiquitin-like family. Nucl. Acids Res., 31, 3166-3173.

Brodal, G. S., Fagerberg, R. & Pedersen, C. N. S. (2003). Computing the Quartet Distance Between Evolutionary Trees in Time O(n log n). Algorithmica, 38(2), 377-395. https://doi.org/10.1007/s00453-003-1065-y

Fredslund, J. (2003). Den Hotteste Forskning.

Fredslund, J. & Hein, J. (2003). Determining the Optimal Set of Indels Explaining the Gaps in a Multiple Alignment Using Affine Gap Cost Function. Poster session presented at International Conference on Research in Computational Molecular Biology (RECOMB 2003), Berlin, Germany.

Willerslev, E., Hansen, AJ., Binladen, J., Brand, TB., Gilbert, MTP., Shapiro, B., Bunce, M., Wiuf, C., Gilichinsky, DA. & Cooper, A. (2003). Diverse plant and animal genetic records from holocene and pleistocene sediments. Kexue (Shanghai), 300, 791-795.

Charlesworth, D., Mable, B. K., Schierup, M. H., Bartolomé, C., Awadalla, P. & Schierup, M. H. (2003). Diversity and linkage of genes in the self-incompatibility gene family in Arabidopsis lyrata. Genetics, 164, 1519-1535.

Kristensen, L. M. & Mailund (2003). Efficient Path Finding with the Sweep-Line Method using External Storage. In Proceedings of International Conference on Formal Engineering Methods (ICFEM 2003) (pp. 319-337)

Mable, B. K., Schierup, M. H. & Charlesworth, D. (2003). Estimating the number, frequency, and dominance of S-alleles in a natural population of Arabidopsis lyrata (Brassicaceae) with sporophytic control of self-incompatibility. Iden, 90, 422-431. http://www.nature.com/hdy

Caprani, O., Fredslund, J., Jacobsen, J., Kramhøft, L., Lunding, R. B., Ilsø, J. M. & Wahlberg, M. (2003). Evolution of Computer Bugs – an Interdisciplinary Team Work. In K. H. Madsen & L. Qvortrup (Eds.), Behind the Scenes of Multimedia Production (pp. 186-215). Springer.

Charlesworth, D., Bartolomé, C., Schierup, M. H. & Mable, B. K. (2003). Haplotype structure of the stigmatic self-incompatibility gene in natural populations of Arabidopsis lyrata. Mol. Biol. Evol., 20(11), 1741-1753.

Displaying results 1151 to 1200 out of 1338

Revised 21.08.2024

Palle Villesen