Find

Bioinformatics Research Centre

Publications

Sort by: Date | Author | Title

Malmos, K., Dong, M., Besenbacher, F., Daasbjerg, K. & Pedersen, S. U. (2007). Formation with the use of Electrostatic Repulsion of Covalent Attached Thin Layer on Glassy Carbon Surface. Paper presented at Electrochemical Science and Technology, Aarhus, Denmark.

Malmkvist, J., Coutant, M. P., Foldager, L., Kaiser, M. Ø. & Herskin, M. S. (2022). Optimering af procedure for lokalbedøvelse af pattegrise forud for kastration. Aarhus Universitet - DCA - Nationalt Center for Fødevarer og Jordbrug. Rådgivningsrapport fra DCA - Nationalt Center for Fødevarer og Jordbrug

Malaspinas, A.-S., Westaway, M. C., Muller, C., Sousa, V. C., Lao, O., Alves, I., Athanasiadis, G., Cheng, J. Y., Crawford, J. E., Heupink, T. H., Macholdt, E., Peischl, S., Schiffels, S., Subramanian, S., Wright, J. L., Albrechtsen, A., Barbieri, C., Dupanloup, I., Eriksson, A. ... Willerslev, E. (2016). A genomic history of Aboriginal Australia. Nature, 538(7624), 207-214. https://doi.org/10.1038/nature18299

Mailund & Lyngsø, R. B. (1998). Textual interchange format for high-level Petri nets. In Proceedings of the first workshop on practical use of coloured Petri nets and Design/CPN (pp. 47-64)

Mailund (1999). Parameterised coloured Petri nets. In Prorceedings of the second workshop on practical use of coloured Petri nets and Design/CPN (pp. 133-151)

Mailund (2000). Separation of style and content with XML in an interchange format for high-level Petri nets. In Proceedings on the XML/SGML based interchange formats for Petri nets (pp. 7-12)

Mailund (2006). Analysing Infinite-State Systems by Combining Equivalence Reduction and the Sweep-Line Method. In Proceedings of International Conference on Application and Theory of Petri Nets (ICATPN 2002) (pp. 314-333)

Mailund & Kristensen, L. M. (2002). A Generalised Sweep-Line Method for Safety Properties. In Proceedings of Formal Methods Europe (FME 2002) (pp. 549-567)

Mailund & Kristensen, L. M. (2002). A Compositional Sweep-Line State Space Exploration Method. In Proceedings of Formal Description Techniques for Distributed Systems and Communication Protocols (FORTE 2002) (pp. 327-343)

Mailund, T. & Westergaard, M. (2004). Obtaining Memory-Efficient Reachability Graph Representations Using the Sweep-Line Method. In Proceedings of Tools and Algorithms for the Construction and Analysis of Systems (TACAS 2004) (pp. 177-191)

Mailund , Pedersen, C. N. S., Bardino, J., Vinter, B. & Karlsen, H. H. (2005). Initial experiences with GeneRecon on MiG. In Proceedings of The 2005 International Conference on Grid Computing and Applications (GCA)

Mailund & Pedersen, C. N. S. (2004). QDist—Quartet Distance Between Evolutionary Trees. Bioinformatics, 20(10), 1636-1637.

Mailund & Pedersen, C. N. S. (2004). QuickJoin—Fast Neighbour-Joining Tree Reconstruction. Bioinformatics, 20(17), 3261-3262.

Mailund , Schierup, M. H., Pedersen, C. N. S., Mechlenborg, P., Madsen, J. N. & Schauser, L. (2005). CoaSim: A Flexible Environment for Simulating Genetic Data under Coalescent Models. B M C Bioinformatics, 6(252). http://www.biomedcentral.com/1471-2105/6/252

Mailund , Brodal, G. S., Fagerberg, R., Pedersen, C. N. S. & Phillips, D. (2006). Recrafting the Neighbor-Joining Method. B M C Bioinformatics, 7(29).

Mailund, T. & Pedersen, C. N. S. (2004). QDist - Quartet Distance between Evolutionary Trees. Bioinformatics, 20(10), 1636-1637.

Mailund, T. (2004). SplitDist—Calculating Split-Distances for Sets of Trees.

Mailund, T. (2005). Getting Started with CoaSim — An Introduction to the Simulator CoaSim.

Mailund, T. (2006). CoaSim Guile Manual — Using the Guile-based CoaSim Simulator.

Mailund, T. & Schauser, L. (2006). Getting Started with GeneRecon — An Introduction to the Association Mapping Tool GeneRecon.

Mailund, T. (2006). GeneRecon Users' Manual — A coalescent based tool for fine-scale association mapping.

Mailund, T. (2006). Getting Started with Blossoc. http://www.daimi.au.dk/~mailund/Blossoc/download/getting-started-1.1.pdf

Mailund, T., Schierup, M. H., Pedersen, C. N. S., Madsen, J. N., Hein, J. & Schauser, L. (2006). GeneRecon—A coalescent based tool for fine-scale association mapping. Bioinformatics, 22(18), 2317–2318.

Mailund, T., Besenbacher, S. & Schierup, M. H. (2006). Whole genome association mapping by incompatibilities and local perfect phylogenies. B M C Bioinformatics, 7(454). https://doi.org/10.1186/1471-2105-7-454

Mailund, T., Pedersen, C. N. S., Bardino, J., Vinter, B. & Karlsen, H. (2007). Experiences with GeneRecon on MiG. Future Generation Computer Systems - The International Journal of eScience, 23, 580-586. https://doi.org/10.1016/j.future.2006.09.003

Mailund, T. (2006). Getting Started with HapCluster: An introduction to the HapCluster association mapping tool.

Mailund, T., Nielsen, J. & Pedersen, C. S. (2009). A Quadratic Time Algorithm for Computing the Quartet Distance between Two General Trees. In Proceedings of IJCBS 2009 (pp. 565-568). IEEE Computer Society Press. https://doi.org/10.1109/IJCBS.2009.42

Mailund, T., Dutheil, J., Hobolth, A., Lunter, G. & Schierup, M. H. (2011). Estimating Divergence Time and Ancestral Effective Population Size of Bornean and Sumatran Orangutan Subspecies Using a Coalescent Hidden Markov Model. P L o S Genetics, 7(3). https://doi.org/10.1371/journal.pgen.1001319

Mailund, T., Halager, A. E. & Westergaard, M. (2012). Using colored Petri nets to construct coalescent hidden markov models: Automatic translation from demographic specifications to efficient inference methods. Lecture Notes in Computer Science, 7347, 32-50. https://doi.org/10.1007/978-3-642-31131-4_3

Mailund, T., Halager, A. E., Westergaard, M., Dutheil, J. Y., Munch, K., Andersen, L. N., Lunter, G., Prüfer, K., Scally, A., Hobolth, A. & Schierup, M. H. (2012). A New Isolation with Migration Model along Complete Genomes Infers Very Different Divergence Processes among Closely Related Great Ape Species. P L o S Genetics, 8(12), e1003125. https://doi.org/10.1371/journal.pgen.1003125

Mailund, T., Munch, K. & Schierup, M. H. (2014). Lineage sorting in apes. Annual Review of Genetics, 48, 519-535. https://doi.org/10.1146/annurev-genet-120213-092532

Mailund, T., Munch, K. & Schierup, M. H. (2014). Inferring the Process of Human–Chimpanzee Speciation. In Encyclopedia of Life Sciences Wiley. https://doi.org/10.1002/9780470015902.a0020833.pub2

Mailund, T. (2017). Beginning Data Science in R: Data Analysis, Visualization, and Modelling for the Data Scientist. Apress.

Mailund, T. (2017). Functional Programming in R: Advanced Statistical Programming for Data Science, Analysis and Finance . Apress.

Mailund, T. (2017). Metaprogramming in R: Advanced Statistical Programming for Data Science, Analysis and Finance . Apress.

Mailund, T. (2017). Advanced Object-Oriented Programming in R: Statistical Programming for Data Science, Analysis, and Finance . Apress.

Mailund, T. (2017). Functional data structures in R: advanced statistical programming in R. Apress. http://link.springer.com/10.1007/978-1-4842-3144-9

Mailund, T. (2018). Domain-Specific Languages in R: Advanced Statistical Programming. Apress.

Mailund, T. (2019). The Joys of Hashing: Hash Table Programming with C. Apress. https://doi.org/10.1007/978-1-4842-4066-3

Maier, R. M., Zhu, Z., Lee, S. H., Trzaskowski, M., Ruderfer, D. M., Stahl, E. A., Ripke, S., Wray, N. R., Yang, J., Visscher, P. M., Robinson, M. R., Forstner, A. J., Mcquillin, A., Trubetskoy, V., Wang, W., Wang, Y., Coleman, J. R. I., Gaspar, H. A., De Leeuw, C. A. ... Zammit, S. (2018). Improving genetic prediction by leveraging genetic correlations among human diseases and traits. Nature Communications, 9(1), Article 989. https://doi.org/10.1038/s41467-017-02769-6

Mai, D. M., Sahana, G., Christiansen, F. & Guldbrandtsen, B. (2010). A genome-wide association study for milk production traits in Danish Jersey cattle using a 50K single nucleotide polymorphism chip. Journal of Animal Science, 88, 3522-3528.

Maetschke, S. R., Simonsen, M., Davis, M. J. & Mark, A. (2011). Gene Ontology-driven inference of protein-protein interactions using inducers. Bioinformatics, 28(1), 69-75. https://doi.org/10.1093/bioinformatics/btr610

Madsen, L. H., Fukai, E., Radutoiu, E. S., Yost, C. K., Sandal, N. N., Schauser, L. & Stougaard, J. (2005). LORE1, an active low-copy-number TY3-gypsy retrotransposon family in the model legume Lotus japonicus. Plant. J., 44, 372-381.

Madsen, B. E., Villesen, P. & Wiuf, C. (2007). A periodic pattern of SNPs in the human genome. Poster session presented at High Throughput Biology: Genomics, Fluxomics, Proteomics, and Interactomics, Vejle, Denmark.

Madsen, B. E., Villesen, P. & Wiuf, C. (2007). A periodic pattern of SNPs in the human genome. Poster session presented at Genomics of Common Diseases, Cambridge.

Madsen, B. E., Villesen, P. & Wiuf, C. (2007). A periodic pattern of SNPs in the human genome. Genome Research, 17(10), 1414-1419.

Madsen, B. E., Ramos, E. M., Boulard, M., Duda, K., Overgaard, J., Nordsmark, M., Wiuf, C. & Hansen, L. L. (2008). Germline mutation in RNASEL predicts increased risk of head and neck, uterine cervix and breast cancer. P L o S One, 3(6), e2492. https://doi.org/10.1371/journal.pone.0002492

Madsen, B. E., Villesen, P. & Wiuf, C. (2008). Short tandem repeats in human exons: a target for disease mutations. B M C Genomics, 9, 410. https://doi.org/10.1186/1471-2164-9-410

Madsen, B. E., Villesen, P. & Wiuf, C. (2010). Short tandem repeats and genetic variation. Methods in Molecular Biology, 628, 297-306. https://doi.org/10.1007/978-1-60327-367-1_16

Madsen, T., Hobolth, A., Jensen, J. L. & Pedersen, J. S. (2017). Significance evaluation in factor graphs. BMC Bioinformatics , 18(1), 199. Article 199. https://doi.org/10.1186/s12859-017-1614-z

Displaying results 501 to 550 out of 1317

11

Revised 21.08.2024

-

Palle Villesen