Publications

Sort by: Date | Author | Title

Midzi, N., Mduluza, T., Mudenge, B., Foldager, L. & Leutscher, P. D. C. (2017). Decrease in Seminal HIV-1 RNA Load After Praziquantel Treatment of Urogenital Schistosomiasis Coinfection in HIV-Positive Men—An Observational Study. Open Forum Infectious Diseases, 4(4), Article ofx199. https://doi.org/10.1093/ofid/ofx199

Meier, S. M., Agerbo, E., Maier, R., Pedersen, C. B., Lang, M., Grove, J., Hollegaard, M. V., Demontis, D., Trabjerg, B. B., Hjorthøj, C., Ripke, S., Degenhardt, F., Nöthen, M. M., Rujescu, D., Maier, W., Werge, T., Mors, O., Hougaard, D. M., Børglum, A. D. ... MooDS SCZ Consortium (2015). High loading of polygenic risk in cases with chronic schizophrenia. Molecular Psychiatry, 1-6. https://doi.org/10.1038/mp.2015.130

McKhann, H. I., Camilleri, C., Bérard, A., Bataillon, T., David, J. L., Reboud, X., Le Corre, V., Caloustian, C., Gut, I. G. & Brunel, D. (2004). Nested core collections maximizing genetic diversity in Arabidopsis thaliana. Plant Journal, 38(1), 193-202. https://doi.org/10.1111/j.1365-313X.2004.02034.x

McFarland, K. N., Tiwari, A., Hashem, V., Zhang, L., Zeng, D., Vincent, J., Arredondo, M. J., Johnson, K. L., Gan, S. R., Yabe, I., Skov, L., Rasmussen, A. & Ashizawa, T. (2024). Extended haplotype with rs41524547-G defines the ancestral origin of SCA10. Human Molecular Genetics, 33(18), 1567-1574. https://doi.org/10.1093/hmg/ddae092

McCauley, S., de Groot, S., Mailund, T. & Hein, J. (2007). Annotation of selection strengths in viral genomes. Bioinformatics, 23(22), 2978-2986. https://doi.org/10.1093/bioinformatics/btm472

Mattila, T., Bechsgaard, J. S., Hansen, T., Schierup, M. H. & Bilde, T. (2012). Ortholog genes identified by transcriptome sequencing in the spider genus Stegodyphus. B M C Genomics, 13(70). https://doi.org/10.1186/1471-2164-13-70

Mattheisen, M., Grove, J., Als, T. D., Martin, J., Voloudakis, G., Meier, S., Demontis, D., Bendl, J., Walters, R., Carey, C. E., Rosengren, A., Strom, N. I., Hauberg, M. E., Zeng, B., Hoffman, G., Zhang, W., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Agerbo, E. ... Børglum, A. D. (2022). Identification of shared and differentiating genetic architecture for autism spectrum disorder, attention-deficit hyperactivity disorder and case subgroups. Nature Genetics, 54(10), 1470-1478. https://doi.org/10.1038/s41588-022-01171-3

Matey-Hernandez, M. L., Brunak, S., Izarzugaza, J. M. G. & Danish Pan-Genome Consortium (Jakob Grove, member of -) (2018). Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios. BMC Bioinformatics, 19(1), Article 239. https://doi.org/10.1186/s12859-018-2239-6

Martins, H. & Villesen, P. (2009). Highly improved dating of primate ERV integrations. Poster session presented at Frontiers of Retrovirology: Complex retroviruses, retroelements and their hosts, Montpellier, France. https://doi.org/10.1186/1742-4690-6-S2-P54

Martins, H. & Villesen, P. (2011). Improved integration time estimation of endogenous retroviruses with phylogenetic data. P L o S One, 6(3), e14745. https://doi.org/10.1371/journal.pone.0014745

Martínez-Ruiz, C., Black, J. R. M., Puttick, C., Hill, M. S., Demeulemeester, J., Larose Cadieux, E., Thol, K., Jones, T. P., Veeriah, S., Naceur-Lombardelli, C., Toncheva, A., Prymas, P., Rowan, A., Ward, S., Cubitt, L., Athanasopoulou, F., Pich, O., Karasaki, T., Moore, D. A. ... TRACERx Consortium (2023). Genomic-transcriptomic evolution in lung cancer and metastasis. Nature, 616(7957), 543-552. https://doi.org/10.1038/s41586-023-05706-4

Maretty, L., Jensen, J. M., Petersen, B., Sibbesen, J. A., Liu, S., Villesen, P., Skov, L., Belling, K. C., Theil Have, C., Izarzugaza, J. M. G., Grosjean, M., Bork-Jensen, J., Grove, J., Als, T. D., Huang, S., Chang, Y., Xu, R., Ye, W., Rao, J. ... Schierup, M. H. (2017). Sequencing and de novo assembly of 150 genomes from Denmark as a population reference. Nature, 548(7665), 87-91. https://doi.org/10.1038/nature23264

Mapendano, C. K., Preker, P., Villesen, P., Prokop, A., Piatkowski, J., Schierup, M. H. & Jensen, T. H. (2011). Depletion of the RNA exosome triggers hypermethylation of human promoters.. Abstract from Third EMBO meeting on 'Chromatin and Epigenetics, Heidelberg, Germany.

Mansilla, F., Lamy, P., Ørntoft, T. F. & Birkenkamp-Demtröder, K. (2008). Upregulation of genes involved in rRNA processing in colon cancer. Poster session presented at EACR Annual Meeting of the European Association of Cancer Research, Lyon, France.

Malolepszy, A., Mun, T., Sandal, N., Gupta, V., Dubin, M., Urbanski, D. F., Shah, N., Bachmann, A., Fukai, E., Hirakawa, H., Tabata, S., Nadzieja, M., Markmann, K., Su, J., Umehara, Y., Soyano, T., Miyahara, A., Sato, S., Hayashi, M. ... Andersen, S. U. (2016). The LORE1 insertion mutant resource. The Plant Journal, 88(2), 306-317. https://doi.org/10.1111/tpj.13243

Malmos, K., Dong, M., Besenbacher, F., Daasbjerg, K. & Pedersen, S. U. (2007). Formation with the use of Electrostatic Repulsion of Covalent Attached Thin Layer on Glassy Carbon Surface. Paper presented at Electrochemical Science and Technology, Aarhus, Denmark.

Malmkvist, J., Coutant, M. P., Foldager, L., Kaiser, M. Ø. & Herskin, M. S. (2022). Optimering af procedure for lokalbedøvelse af pattegrise forud for kastration. DCA - Nationalt Center for Fødevarer og Jordbrug. Rådgivningsrapport fra DCA - Nationalt Center for Fødevarer og Jordbrug

Malham, M., Vestergaard, M. V., Bataillon, T., Villesen, P., Dempfle, A., Bang, C., Engsbro, A. L., Jakobsen, C., Franke, A., Wewer, V., Thingholm, L. B. & Petersen, A. M. (2025). The Composition of the Fecal and Mucosa-adherent Microbiota Varies Based on Age and Disease Activity in Ulcerative Colitis. Inflammatory Bowel Diseases, 31(2), 501-513. https://doi.org/10.1093/ibd/izae179

Malaspinas, A.-S., Westaway, M. C., Muller, C., Sousa, V. C., Lao, O., Alves, I., Athanasiadis, G., Cheng, J. Y., Crawford, J. E., Heupink, T. H., Macholdt, E., Peischl, S., Schiffels, S., Subramanian, S., Wright, J. L., Albrechtsen, A., Barbieri, C., Dupanloup, I., Eriksson, A. ... Willerslev, E. (2016). A genomic history of Aboriginal Australia. Nature, 538(7624), 207-214. https://doi.org/10.1038/nature18299

Mailund & Lyngsø, R. B. (1998). Textual interchange format for high-level Petri nets. In Proceedings of the first workshop on practical use of coloured Petri nets and Design/CPN (pp. 47-64)

Mailund (1999). Parameterised coloured Petri nets. In Prorceedings of the second workshop on practical use of coloured Petri nets and Design/CPN (pp. 133-151)

Mailund (2000). Separation of style and content with XML in an interchange format for high-level Petri nets. In Proceedings on the XML/SGML based interchange formats for Petri nets (pp. 7-12)

Mailund (2006). Analysing Infinite-State Systems by Combining Equivalence Reduction and the Sweep-Line Method. In Proceedings of International Conference on Application and Theory of Petri Nets (ICATPN 2002) (pp. 314-333)

Mailund & Kristensen, L. M. (2002). A Generalised Sweep-Line Method for Safety Properties. In Proceedings of Formal Methods Europe (FME 2002) (pp. 549-567)

Mailund & Kristensen, L. M. (2002). A Compositional Sweep-Line State Space Exploration Method. In Proceedings of Formal Description Techniques for Distributed Systems and Communication Protocols (FORTE 2002) (pp. 327-343)

Mailund, T. & Westergaard, M. (2004). Obtaining Memory-Efficient Reachability Graph Representations Using the Sweep-Line Method. In Proceedings of Tools and Algorithms for the Construction and Analysis of Systems (TACAS 2004) (pp. 177-191)

Mailund , Pedersen, C. N. S., Bardino, J., Vinter, B. & Karlsen, H. H. (2005). Initial experiences with GeneRecon on MiG. In Proceedings of The 2005 International Conference on Grid Computing and Applications (GCA)

Mailund & Pedersen, C. N. S. (2004). QDist—Quartet Distance Between Evolutionary Trees. Bioinformatics, 20(10), 1636-1637.

Mailund & Pedersen, C. N. S. (2004). QuickJoin—Fast Neighbour-Joining Tree Reconstruction. Bioinformatics, 20(17), 3261-3262.

Mailund , Schierup, M. H., Pedersen, C. N. S., Mechlenborg, P., Madsen, J. N. & Schauser, L. (2005). CoaSim: A Flexible Environment for Simulating Genetic Data under Coalescent Models. B M C Bioinformatics, 6(252). http://www.biomedcentral.com/1471-2105/6/252

Mailund , Brodal, G. S., Fagerberg, R., Pedersen, C. N. S. & Phillips, D. (2006). Recrafting the Neighbor-Joining Method. B M C Bioinformatics, 7(29).

Mailund, T. & Pedersen, C. N. S. (2004). QDist - Quartet Distance between Evolutionary Trees. Bioinformatics, 20(10), 1636-1637.

Mailund, T. (2004). SplitDist—Calculating Split-Distances for Sets of Trees.

Mailund, T. (2005). Getting Started with CoaSim — An Introduction to the Simulator CoaSim.

Mailund, T. (2006). CoaSim Guile Manual — Using the Guile-based CoaSim Simulator.

Mailund, T. & Schauser, L. (2006). Getting Started with GeneRecon — An Introduction to the Association Mapping Tool GeneRecon.

Mailund, T. (2006). GeneRecon Users' Manual — A coalescent based tool for fine-scale association mapping.

Mailund, T. (2006). Getting Started with Blossoc. http://www.daimi.au.dk/~mailund/Blossoc/download/getting-started-1.1.pdf

Mailund, T., Schierup, M. H., Pedersen, C. N. S., Madsen, J. N., Hein, J. & Schauser, L. (2006). GeneRecon—A coalescent based tool for fine-scale association mapping. Bioinformatics, 22(18), 2317–2318.