Publications

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Rafnar, T., Vermeulen, S. H., Sulem, P., Thorleifsson, G., Aben, K. K., Witjes, J. A., Grotenhuis, A. J., Verhaegh, G. W., Hulsbergen-van de Kaa, C. A., Besenbacher, S., Gudbjartsson, D., Stacey, S. N., Gudmundsson, J., Johannsdottir, H., Bjarnason, H., Zanon, C., Helgadottir, H., Jonasson, J. G., Tryggvadottir, L. ... Kiemeney, L. A. (2011). European genome-wide association study identifies SLC14A1 as a new urinary bladder cancer susceptibility gene. Human Molecular Genetics, 20(21), 4268-4281. https://doi.org/10.1093/hmg/ddr303

Rafnar, T., Gudbjartsson, D. F., Sulem, P., Jonasdottir, A., Sigurdsson, A., Jonasdottir, A., Besenbacher, S., Lundin, P., Stacey, S. N., Gudmundsson, J., Magnusson, O. T., le Roux, L., Orlygsdottir, G., Helgadottir, H. T., Johannsdottir, H., Gylfason, A., Tryggvadottir, L., Jonasson, J. G., de Juan, A. ... Stefansson, K. (2011). Mutations in BRIP1 confer high risk of ovarian cancer. Nature Genetics, 43(11), 1104-7. https://doi.org/10.1038/ng.955

Radel, D., Sand, A. & Steel, M. (2013). Hide and seek: placing and finding an optimal tree for thousands of homoplasy-rich sequences. Molecular Phylogenetics and Evolution, 69(3), 1186–1189. https://doi.org/10.1016/j.ympev.2013.08.001

Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K. S., Manichanh, C., Nielsen, T., Pons, N., Levenez, F., Yamada, T., Mende, D. R., Li, J., Xu, J., Li, S., Li, D., Cao, J., Wang, B., Liang, H., Zheng, H. ... MetaHIT Consortium (2010). A human gut microbial gene catalogue established by metagenomic sequencing. Nature, 464(7285), 59-65. https://doi.org/10.1038/nature08821

Qian, Y., Browning, B. L. & Browning, S. R. (2014). Efficient clustering of identity-by-descent between multiple individuals. Bioinformatics, 30(7), 915-922. https://doi.org/10.1093/bioinformatics/btt734

Qian, Y., Besenbacher, S., Mailund, T. & Schierup, M. H. (2014). Identifying disease associated genes by network propagation. BMC Systems Biology, 8(Suppl 1), S6. https://doi.org/10.1186/1752-0509-8-S1-S6

Qian, Y., Kehr, B. & Halldorsson, B. V. (2015). PopAlu: population-scale detection of Alu polymorphisms. PeerJ, 3, Article 1269. https://doi.org/10.7717/peerj.1269

Qian, Y. (2015). Genome Wide Variation Analysis Using High Throughput Data.

Pujolar, J. M., Jacobsen, L. M. W., Als, T. D., Frydenberg, J., Munch, K., Jonsson, B., Jian, J. B., Cheng, L., Maes, G. E., Bernatchez, L. & Hansen, M. M. (2014). Genome-wide single generation signatures of local selection in the panmictic European eel. Molecular Ecology, 23, 2514-2528. https://doi.org/10.1111/mec.12753

Prüfer, K., Munch, K., Hellmann, I., Akagi, K., Miller, J. R., Walenz, B., Koren, S., Sutton, G., Kodira, C., Winer, R., Knight, J. R., Mullikin, J. C., Meader, S. J., Ponting, C. P., Lunter, G., Higashino, S., Hobolth, A., Dutheil, J., Karakoç, E. ... Pääbo, S. (2012). The bonobo genome compared with the chimpanzee and human genomes. Nature, 486(7404), 527-31. https://doi.org/10.1038/nature11128

Prüfer, K., de Filippo, C., Grote, S., Mafessoni, F., Korlević, P., Hajdinjak, M., Vernot, B., Skov, L., Hsieh, P., Peyrégne, S., Reher, D., Hopfe, C., Nagel, S., Maricic, T., Fu, Q., Theunert, C., Theunert, C., Rogers, R., Skoglund, P. ... Pääbo, S. (2017). A high-coverage Neandertal genome from Vindija Cave in Croatia. Science, 358(6363), 655-658. https://doi.org/10.1126/science.aao1887

Privé, F., Arbel, J. & Vilhjálmsson, B. J. (2020). LDpred2: better, faster, stronger. Bioinformatics, 36(22-23), 5424-5431. https://doi.org/10.1093/bioinformatics/btaa1029

Privé, F., Zhu, Z. & Vilhjalmsson, B. J. (2021). Finding hidden treasures in summary statistics from genome-wide association studies. Nature Genetics, 53(4), 431-432. https://doi.org/10.1038/s41588-021-00824-z

Privé, F., Aschard, H., Carmi, S., Folkersen, L., Hoggart, C., O'Reilly, P. F. & Vilhjálmsson, B. J. (2022). Portability of 245 polygenic scores when derived from the UK Biobank and applied to 9 ancestry groups from the same cohort. American Journal of Human Genetics, 109(1), 12-23. https://doi.org/10.1016/j.ajhg.2021.11.008

Privé, F., Arbel, J., Aschard, H. & Vilhjálmsson, B. J. (2022). Identifying and correcting for misspecifications in GWAS summary statistics and polygenic scores. Human Genetics and Genomics Advances, 3(4), Article 100136. https://doi.org/10.1016/j.xhgg.2022.100136

Privé, F., Albiñana, C., Arbel, J., Pasaniuc, B. & Vilhjálmsson, B. J. (2023). Inferring disease architecture and predictive ability with LDpred2-auto. American Journal of Human Genetics, 110(12), 2042-2055. https://doi.org/10.1016/j.ajhg.2023.10.010

Preker, P., Nielsen, J., Kammler, S., Lykke-Andersen, S., Christensen, M. S., Mapendano, C. K., Schierup, M. H. & Jensen, T. H. (2008). RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters. Science, 322(5909), 1851-1854. https://doi.org/10.1126/science.1164096

Preker, P., Nielsen, J., Schierup, M. H. & Jensen, T. H. (2009). RNA polymerase plays both sides: Vivid and bidirectional transcription around and upstream of active promoters. Cell Cycle, 8(8), 1106-1107.

Prado-Martinez, J., Sudmant, P. H., Kidd, J. M., Li, H., Kelley, J. L., Lorente-Galdos, B., Veeramah, K. R., Woerner, A. E., O'Connor, T. D., Santpere, G., Cagan, A., Theunert, C., Casals, F., Laayouni, H., Munch, K., Hobolth, A., Halager, A. E., Malig, M., Hernandez-Rodriguez, J. ... Marques-Bonet, T. (2013). Great ape genetic diversity and population history. Nature, 499, 471–475. https://doi.org/10.1038/nature12228

Pradal, C., Olesen, J. M. & Wiuf, C. H. (2009). Temporal development and collapse of an Arctic plant-pollinator network. BMC Ecology, 9. https://doi.org/10.1186/1472-6785-9-24

Poulsgaard, G. A., Sørensen, S. G., Juul, R. I., Nielsen, M. M. & Pedersen, J. S. (2023). Sequence dependencies and mutation rates of localized mutational processes in cancer. Genome Medicine, 15(1), Article 63. https://doi.org/10.1186/s13073-023-01217-z

Poulsen, N. A., Nielsen, E. E., Schierup, M. H., Loeschcke, V. & Grønkjær, P. (2006). Long-term stability and effective population size in North Sea and Baltic Sea cod (Gadus morhua). Molecular Ecology, 15, 321-331.

Poulsen, I., Balle, M. & Givard, K. L. (2019). Nociception Coma Scale–Revised: Nurses’ Experience in Clinical Practice. Pain Management Nursing, 20(6), 592-598. https://doi.org/10.1016/j.pmn.2019.02.003

Posada, D. & Wiuf, C. (2003). Simulating haplotype blocks in the human genome. Bioinformatics, 19(2), 289-290.

Porsborg, P. S., Charmouh, A. P., Singh, V. K., Winge, S. B., Hvilsom, C., Oroperv, C., Hansen, L. T., Berner, J. A., Pelizzola, M., Laurentino, S., Neuhaus, N., Hobolth, A., Bataillon, T., Besenbacher, S., Almstrup, K. & Schierup, M. H. (2025). Long-read sequencing of primate testis and human sperm allows identification of recombination events in individuals. Nature Communications, 16(1), Article 10337. https://doi.org/10.1038/s41467-025-65248-3

Polekhina, G., Thirup, S., Kjeldgaard, M., Nissen, P., Lippmann, C. & Nyborg, J. (1996). Helix unwinding in the effector region of elongation factor EF-Tu-GDP. Structure, 4(10), 1141-51.

Schizophrenia Working Group of the Psychiatric Genomics Consortium (2024). Distinguishing different psychiatric disorders using DDx-PRS. https://doi.org/10.1101/2024.02.02.24302228

Pettersson, E., Lichtenstein, P., Larsson, H., Song, J., Attention Deficit/Hyperactivity Disorder Working Group of the iPSYCH-Broad-PGC Consortium, Autism Spectrum Disorder Working Group of the iPSYCH-Broad-PGC Consortium, Bipolar Disorder Working Group of the PGC, Eating Disorder Working Group of the PGC, Major Depressive Disorder Working Group of the PGC, Obsessive Compulsive Disorders and Tourette Syndrome Working Group of the PGC, Schizophrenia CLOZUK, Substance Use Disorder Working Group of the PGC , Agrawal, A., Borglum, A. D., Bulik, C. M., Daly, M. J., Davis, L. K., Demontis, D., Edenberg, H. J., Grove, J., Gelernter, J., Neale, B. M., Pardiñas, A. F., Stahl, E., Walters, J. T. R., Walters, R. ... Polderman, T. J. C. (2019). Genetic influences on eight psychiatric disorders based on family data of 4 408 646 full and half-siblings, and genetic data of 333 748 cases and controls. Psychological Medicine, 49(7), 1166-1173. https://doi.org/10.1017/S0033291718002039

Pettersson, E., Lichtenstein, P., Larsson, H., Song, J., Attention Deficit/Hyperactivity Disorder Working Group of the iPSYCH-Broad-PGC Consortium, Autism Spectrum Disorder Working Group of the iPSYCH-Broad-PGC Consortium, Bipolar Disorder Working Group of the PGC, Eating Disorder Working Group of the PGC, Major Depressive Disorder Working Group of the PGC, Obsessive Compulsive Disorders and Tourette Syndrome Working Group of the PGC, Schizophrenia CLOZUK, Substance Use Disorder Working Group of the PGC , Agrawal, A., Børglum, A. D., Bulik, C. M., Daly, M. J., Davis, L. K., Demontis, D., Edenberg, H. J., Grove, J., Gelernter, J., Neale, B. M., Pardiñas, A. F., Stahl, E., Walters, J. T. R., Walters, R. ... Polderman, T. J. C. (2019). Genetic influences on eight psychiatric disorders based on family data of 4 408 646 full and half-siblings, and genetic data of 333 748 cases and controls - CORRIGENDUM. Psychological Medicine, 49(2), 351. https://doi.org/10.1017/S0033291718002945

Perfeito, L., Sousa, A., Bataillon, T. & Gordo, I. (2014). Rates of fitness decline and rebound suggest pervasive epistasis. Evolution, 68(1), 150-162. https://doi.org/10.1111/evo.12234

Penner, R., Andersen, J. E., Wiuf, C. H. & Knudsen, M. (2008). System and method for modelling a molecule with a graph. (Patent No. PA 2008 01009).

Penner, R., Knudsen, M., Wiuf, C. H. & Andersen, J. E. (2010). Fatgraph Models of Proteins. Communications on Pure and Applied Mathematics, 63(10), 1249-1297. https://doi.org/10.1002/cpa.20340

Penner, R., Knudsen, M., Wiuf, C. H. & Andersen, J. E. (2011). An Algebro-Topological Description of Protein Domain Structure. PLoS One. https://doi.org/10.1371/journal.pone.0019670

Penn, O., Stern, A., Rubinstein, N. D., Dutheil, J., Bacharach, E., Galtier, N. & Pupko, T. (2008). Evolutionary modeling of rate shifts reveals specificity determinants in HIV-1 subtypes. PLoS Computational Biology, 4(11), e1000214. https://doi.org/10.1371/journal.pcbi.1000214

Pedersen, J. S., Forsberg, R., Meyer, I. M. & Hein, J. (2004). An evolutionary model for protein-coding regions with conserved RNA structure. Mol Biol Evol. Oct;21, 10, 1913-1922.

Pedersen, J. S., Meyer, I. M., Forsberg, R., Simmonds, P. & nullJA, H. (2004). Comparative method for finding and folding RNA secondary structures within protein-coding regions. Nucleic Acids Res Sep 24, 32(16), 4925-4936.

Pedersen, AK., Wiuf, C. & Christiansen, F. B. (1998). A codon-based model designed to describe lenti-viral evolution. Mol. Biol. Evol., 15, 1069-1081.

Pedersen, C. S. & Kristensen, T. G. (2009). Optimal Overlay of Ligands with Flexible Bonds Using Differential Evolution. Poster session presented at 17th Annual International Conference on Intelligent Systems for Molecular Bioligy (ISMB) & 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden. http://www.iscb.org/ismbeccb2009/poster_list.php?cat=C

Pedersen, K., Wiechec, E., Madsen, B. E., Overgaard, J. & Hansen, L. L. (2010). A simple way to evaluate self-designed probes for tumor specific Multiplex Ligation-dependent Probe Amplification (MLPA). BMC Research Notes, 3(1), 179.

Pedersen, C. N. S., Axelsen, K. B., Harper, J. F. & Palmgren, M. G. (2012). Evolution of plant P-type ATPases. Frontiers in Plant Science, 21. https://doi.org/10.3389/fpls.2012.00031

Pedersen, B. P., Ifrim, G., Liboriussen, P., Axelsen, K. B., Palmgren, M. G., Nissen, P., Wiuf, C. H. & Pedersen, C. N. S. (2014). Large Scale Identification and Categorization of Protein Sequences Using Structured Logistic Regression. PLoS One, 9(1), Article e85139. https://doi.org/10.1371/journal.pone.0085139

Pedersen, C. B., Bybjerg-Grauholm, J., Pedersen, M. G., Grove, J., Agerbo, E., Bækvad-Hansen, M., Poulsen, J. B., Hansen, C. S., McGrath, J. J., Als, T. D., Goldstein, J. I., Neale, B. M., Daly, M. J., Hougaard, D. M., Mors, O., Nordentoft, M., Børglum, A. D., Werge, T. & Mortensen, P. B. (2018). The iPSYCH2012 case-cohort sample: new directions for unravelling genetic and environmental architectures of severe mental disorders. Molecular Psychiatry, 23(1), 6–14. https://doi.org/10.1038/mp.2017.196

Pedersen, H. S., Liu, Y., Foldager, L., Callesen, H., Larsen, K. E. & Sørensen, M. T. (2019). Calibration of sperm concentration for in vitro fertilization in a mouse reprotoxicity model. Toxicology in Vitro, 55, 58-61. https://doi.org/10.1016/j.tiv.2018.11.009

Pedersen, E. M., Agerbo, E., Plana-Ripoll, O., Grove, J., Dreier, J. W., Musliner, K. L., Bækvad-Hansen, M., Athanasiadis, G., Schork, A., Bybjerg-Grauholm, J., Hougaard, D. M., Werge, T., Nordentoft, M., Mors, O., Dalsgaard, S., Christensen, J., Børglum, A. D., Mortensen, P. B., McGrath, J. J. ... Vilhjálmsson, B. J. (2022). Accounting for age of onset and family history improves power in genome-wide association studies. American Journal of Human Genetics, 109(3), 417-432. https://doi.org/10.1016/j.ajhg.2022.01.009

Pedersen, J. G., Sokac, M., Sørensen, B. S., Luczak, A. A., Aggerholm-Pedersen, N., Birkbak, N. J., Øllegaard, T. H. & Jakobsen, M. R. (2022). Increased Soluble PD-1 Predicts Response to Nivolumab plus Ipilimumab in Melanoma. Cancers, 14(14), Article 3342. https://doi.org/10.3390/cancers14143342

Pedersen, E. M., Wimberley, T. & Vilhjálmsson, B. J. (2024). A cautionary tale for Alzheimer’s disease GWAS by proxy: Genetic epidemiology. Nature Genetics, 56(12), 2590-2591. Article 99. https://doi.org/10.1038/s41588-024-02023-y

Pedersen, E. M., Steinbach, J., Pedersen, C. B., Schork, A. J., Krebs, M. D., Vilhjálmsson, B. J. & Privé, F. (2025). Automatic detection of n-degree family members. Frontiers in Genetics, 16, Article 1708315. https://doi.org/10.3389/fgene.2025.1708315

Pebesma, E., Mailund, T. & Hiebert, J. (2016). Measurement units in R. The R Journal, 8(2), 486-494.

Pearce, B. D., Grove, J., Bonney, E. A., Bliwise, N., Dudley, D. J., Schendel, D. & Thorsen, P. (2010). Interrelationship of cytokines, hypothalamic-pituitary-adrenal axis hormones, and psychosocial variables in the prediction of preterm birth. Gynecologic and Obstetric Investigation, 70(1), 40-46. https://doi.org/10.1159/000284949

Pathi, A., Wright, M., Smed, M. K., Nelson, J. L., Olsen, J., Hetland, M. L., Zoffmann, V. & Jawaheer, D. (2021). The rheumatoid arthritis gene expression signature among women who improve or worsen during pregnancy: A pilot study. Journal of Rheumatology, 48(7), 985-991. https://doi.org/10.3899/jrheum.201128

Displaying results 351 to 400 out of 1378

Revised 13.01.2026

Palle Villesen