Publications

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Kongsted, H., Foldager, L. & Sørensen, J. T. (2020). Kødkontrollen fanger ikke forekomst af halebid på hele haler. Dansk Veterinærtidsskrift, 2020(7), 18-19. https://dvt.ddd.dk/bladarkiv/2020/nr-07/koedkontrollen-fanger-ikke-forekomst-af-halebid-paa-hele-haler/

Kongsted, H., Krogh, M. A., Nielsen, C. L., Henriksen, B. I. F., Foldager, L. & Sørensen, J. T. (2022). Danish welfare-label pig production systems: Usage of antibiotics and occurrence of disease. 83-91. Paper presented at 20th Congress of the International Society for Animal Hygiene , Berlin, Germany.

Kong, A., Frigge, M. L., Masson, G., Besenbacher, S., Sulem, P., Magnusson, G., Gudjonsson, S. A., Sigurdsson, A., Jonasdottir, A., Jonasdottir, A., Wong, W. S. W., Sigurdsson, G., Walters, G. B., Steinberg, S., Helgason, H., Thorleifsson, G., Gudbjartsson, D. F., Helgason, A., Magnusson, O. T. ... Stefansson, K. (2012). Rate of de novo mutations and the importance of father's age to disease risk. Nature, 488(7412), 471-5. https://doi.org/10.1038/nature11396

Kong, A., Thorleifsson, G., Frigge, M. L., Vilhjalmsson, B. J., Young, A. I., Thorgeirsson, T. E., Benonisdottir, S., Oddsson, A., Halldorsson, B. V., Masson, G., Gudbjartsson, D. F., Helgason, A., Bjornsdottir, G., Thorsteinsdottir, U. & Stefansson, K. (2018). The nature of nurture: Effects of parental genotypes. Science, 359(6374), 424-428. https://doi.org/10.1126/science.aan6877

Kofod Petersen, A., Forgie, A. H., Bindslev, D. A., Villesen, P. & Staun Larsen, L. (2024). Automatic removal of soft tissue from 3D dental photo scans; an important step in automating future forensic odontology identification. Scientific Reports, 14, Article 12421. https://doi.org/10.1038/s41598-024-63198-2

Koed, K., Wiuf, C., Christensen, L. L., Wikman, F., Zieger, K., Jensen, K. M.-E., Maase, H. V. D. & Ørntoft, T. F. (2005). High-density single nucleotide polymorphism array defines novel stage and location-dependent allelic imbalances in human bladder tumors. Cancer Research, 65(1), 34-45.

Kodesh, A., Levine, S. Z., Khachadourian, V., Rahman, R., Schlessinger, A., O'Reilly, P. F., Grove, J., Schendel, D., Buxbaum, J. D., Croen, L., Reichenberg, A., Sandin, S. & Janecka, M. (2022). Maternal health around pregnancy and autism risk: a diagnosis-wide, population-based study. Psychological Medicine, 52(16), 4076-4084. https://doi.org/10.1017/S0033291721001021

Kobek-Kjeldager, C., Jensen, L. D., Foldager, L., Kaiser, M., Thodberg, K. & Herskin, M. S. (2022). Validation of behavioural sampling techniques for 20-25 kg pigs during 23-hour transport. In M. Kjosevski, S. Waiblinger & V. Ilieski (Eds.), Proceedings of the 55th Congress of the ISAE: Animal Behaviour and Beyond (pp. 167-167). https://www.applied-ethology.org/res/ISAE_2022_PROCEEDINGS_e-version.pdf

Kobek-Kjeldager, C., Jensen, L. D., Foldager, L., Thodberg, K., Petersen, D. L. S. & Herskin, M. S. (2023). Effects of journey duration and temperature during pre-slaughter transport on behaviour of cull sows in lairage. Research in Veterinary Science, 164, Article 105016. https://doi.org/10.1016/j.rvsc.2023.105016

Kobek-Kjeldager, C., Jensen, L. D., Foldager, L., Kaiser, M., Thodberg, K. & Herskin, M. S. (2024). Validation of behavioural sampling techniques for 20-25 kg pigs during transport. Livestock Science, 280, Article 105411. https://doi.org/10.1016/j.livsci.2024.105411

Kobek-Kjeldager, C., Jensen, L. D., Foldager, L., Gould, L. M., Thodberg, K., Schrøder-Petersen, D. L. & Herskin, M. S. (2024). Behaviour of cull sows during transport to slaughter – Effects of journey duration, a stationary period and temperature. Applied Animal Behaviour Science, 271, Article 106174. https://doi.org/10.1016/j.applanim.2024.106174

Knudsen, M. & Wiuf, C. (2008). A Markov chain approach to Randomly Grown Graphs. Journal of Applied Mathematics. https://doi.org/10.1155/2008/190836

Knudsen, M., Penner, R., Andersen, J. E. & Wiuf, C. H. (2008). An Algebraic Topology Approach to the Classification of Protein Domain Structures. Poster session presented at 6th Annual Rocky Mountain Bioinformatics Conference, Snowmass Village, Colorado, United States.

Knudsen, M. & Nielsen, R. (2009). Modeling cis- and trans-regulation in Drosophila species. In Tampere International Center for Signal Processing, TICSP Series 48 Tampere International Center for Signal Processing.

Knudsen, M. & Wiuf, C. H. (2010). The CATH Database. Human Genomics (Online).

Knudsen, M., Feliu, E., Wiuf, C. H. & Andersen, L. N. (2010). Steady States of Phosphorelays and Two-Component Systems. Poster session presented at The 11th International Conference on Systems Biology, Edinburgh, United Kingdom.

Knudsen, M. (2010). Mathematical Models of Protein Interaction Networks and Protein Domain Structures. Det Naturvidenskabelige Fakultet, Aarhus Universitet.

Knudsen, M., Feliu, E. & Wiuf, C. H. (2011). Mathematical Modeling of Phosphorelay Dynamics. Poster session presented at The XII International Congress on Molecular Systems Biology, Lleida, Spain.

Knudsen, M., Feliu, E. & Wiuf, C. H. (2012). Exact Analysis of Intrinsic Qualitative Features of Phosphorelays using Mathematical Models. Journal of Theoretical Biology, 300, 7-18. https://doi.org/10.1016/j.jtbi.2012.01.007

Knudsen, M., Søndergaard, D. & Pedersen, C. N. S. (2014). Combinatorics of Non-Ribosomal Peptide Synthetases.

Knudsen, M., Søndergaard, D. A., Tofting-Olesen, C., Hansen, F. T., Brodersen, D. E. & Pedersen, C. S. (2016). Computational discovery of specificity-conferring sites in non-ribosomal peptide synthetases. Bioinformatics, 32(3), 325-329. https://doi.org/10.1093/bioinformatics/btv600

Kjeldsen, K. U., Bataillon, T., Pinel, N., De Mita, S., Lund, M. B., Panitz, F., Bendixen, C., Stahl, D. A. & Schramm, A. (2012). Purifying selection and molecular adaptation in the genome of Verminephrobacter, the heritable symbiotic bacteria of earthworms. Genome Biology and Evolution, 4(3), 307-315. https://doi.org/10.1093/gbe/evs014

Kjeldgaard, M., Nissen, P., Thirup, S. & Nyborg, J. (1993). The crystal structure of elongation factor EF-Tu from Thermus aquaticus in the GTP conformation. Structure, 1(1), 35-50.

Kjeldbjerg Lassen, J., Bradshaw, R., Villesen, P. & Francese, S. (2023). Statistical Modelling Investigation of MALDI-MSI-Based Approaches for Document Examination. Molecules, 28(13), Article 5207. https://doi.org/10.3390/molecules28135207

Kjeldbjerg, A. L., Villesen, P., Aagaard, L. & Pedersen, F. S. (2007). An active 70 million year old viral infection in humans. Poster session presented at High Throughput Biology: Genomics, Fluxomics, Proteomics, and Interactomics, Denmark.

Kjeldbjerg, A., Villesen, P., Aagaard, L. & Pedersen, F. S. (2008). Gene conversion and purifying selection of a placenta-specific ERV-V envelope gene during simian evolution. B M C Evolutionary Biology, 8(1), 266. https://doi.org/10.1186/1471-2148-8-266

Kjældgaard, A. L., Pilely, K., Olsen, K. S., Jessen, A. H., Lauritsen, A. Ø., Pedersen, S. W., Svenstrup, K., Karlsborg, M., Thagesen, H., Blaabjerg, M., Theódórsdóttir, Á., Elmo, E. G., Møller, A. T., Bonefeld, L., Berg, M., Garred, P. & Møller, K. (2021). Prediction of survival in amyotrophic lateral sclerosis: a nationwide, Danish cohort study. BMC Neurology, 21(1), Article 164. https://doi.org/10.1186/s12883-021-02187-8

Kisistók, J., Christensen, D. S., Rasmussen, M. H., Duval, L., Aggerholm-Pedersen, N., Luczak, A. A., Sorensen, B. S., Jakobsen, M. R., Oellegaard, T. H. & Birkbak, N. J. (2023). Analysis of circulating tumor DNA during checkpoint inhibition in metastatic melanoma using a tumor-agnostic panel. Melanoma Research, 33(5), 364-374. https://doi.org/10.1097/CMR.0000000000000903

Kirkpatrick, M. & Bataillon, T. (1999). Artificial selection on phenotypically plastic traits. Genetics Research, 74(3), 265-70.

Kirkegaard, K. K., Fredsted, P. V., Jensen, J. M., Hindkjær, J. J., Kølvraa, S., Ingerslev, H. J. & Lykke-Hartmann, K. (2015). Distinct differences in global gene expression profiles in non-implanted blastocysts and blastocysts resulting in live birth. Gene, 571(2), 212-220. https://doi.org/10.1016/j.gene.2015.06.057

Kim, S. W., Lee, H., Song, D. Y., Lee, G. H., Ji, J., Park, J. W., Han, J. H., Lee, J. W., Byun, H. J., Son, J. H., Kim, Y. R., Lee, Y., Kim, J., Jung, A., Lee, J., Kim, E., Kim, S. H., Lee, J. H., Satterstrom, F. K. ... An, J. Y. (2024). Whole genome sequencing analysis identifies sex differences of familial pattern contributing to phenotypic diversity in autism. Genome Medicine, 16(1), 114. Article 114. https://doi.org/10.1186/s13073-024-01385-6

Kilburn, T. R., Eriksen, H.-L. F., Underbjerg, M., Thorsen, P., Mortensen, E. L., Landrø, N. I., Bakketeig, L. S., Grove, J., Sværke, C. & Kesmodel, U. S. (2015). Low to Moderate Average Alcohol Consumption and Binge Drinking in Early Pregnancy: Effects on Choice Reaction Time and Information Processing Time in Five-Year-Old Children. PLOS ONE, 10(9), e0138611. https://doi.org/10.1371/journal.pone.0138611

Keightley, P. D. & Bataillon, T. (2000). Multigeneration maximum-likelihood analysis applied to mutation-accumulation experiments in Caenorhabditis elegans. Genetics, 154(3), 1193-201.

Kazemi Naeini, M., Akbarzadeh, M., Kazemi, I., Speed, D. & Hosseini, S. M. (2024). Using the Bayesian variational spike and slab model in a genome-wide association study for finding associated loci with bipolar disorder. Annals of Human Genetics, 88(3), 212-246. https://doi.org/10.1111/ahg.12538

Karasaki, T., Moore, D. A., Veeriah, S., Naceur-Lombardelli, C., Toncheva, A., Magno, N., Ward, S., Bakir, M. A., Watkins, T. B. K., Grigoriadis, K., Huebner, A., Hill, M. S., Frankell, A. M., Abbosh, C., Puttick, C., Zhai, H., Gimeno-Valiente, F., Saghafinia, S., Kanu, N. ... TRACERx Consortium (2023). Evolutionary characterization of lung adenocarcinoma morphology in TRACERx. Nature Medicine, 29, 833-845. https://doi.org/10.1038/s41591-023-02230-w

Kalkbrenner, A. E., Zheng, C., Yu, J., Jenson, T. E., Kuhlwein, T., Ladd-Acosta, C., Grove, J. & Schendel, D. (2024). Method for Testing Etiologic Heterogeneity Among Non-Competing Diagnoses, Applied to Impact of Perinatal Exposures on Autism and Attention Deficit Hyperactivity Disorder. Epidemiology, 35(5), 689-700. Article 1760. https://doi.org/10.1097/EDE.0000000000001760

Kaiser, M., Foldager, L. & Herskin, M. S. (2023). Height relative to body weight in nursery pigs. Journal of Animal Science, 101, 1-9. Article skad123. https://doi.org/10.1093/jas/skad123

Juul, M., Madsen, T., Guo, Q., Bertl, J., Hobolth, A., Kellis, M. & Pedersen, J. S. (2019). ncdDetect2: Improved models of the site-specific mutation rate in cancer and driver detection with robust significance evaluation. Bioinformatics, 35(2), 189-199. https://doi.org/10.1093/bioinformatics/bty511

Juul, R. I., Nielsen, M. M., Juul, M., Feuerbach, L. & Pedersen, J. S. (2021). The landscape and driver potential of site-specific hotspots across cancer genomes. npj Genomic Medicine, 6(1), Article 33. https://doi.org/10.1038/s41525-021-00197-6

Justesen, P. & Ursem, R. K. (2009). Multiobjective Distinct Candidates Optimization (MODCO): A Cluster-Forming Differential Evolution Algorithm. In M. Ehrgott, C. Fonseca, X. Gandibleux, J.-K. Hao & M. Sevaux (Eds.), Evolutionary Multi-Criterion Optimization: 5th International Conference, EMO 2009. Nantes, France, April 2009. Proceedings (Vol. 5, pp. 525-539). Springer. https://doi.org/10.1007/978-3-642-01020-0_41

Justesen, P. (2010). Distinct Candidates Optimization: A Novel Approach to Applied Evolutionary Multi- and Many-Objective Optimization. (1 ed.).

GROUP Investigators & iPSYCH-GEMS SCZ (Jakob Grove, member of -) (2014). Integrated Pathway-Based Approach Identifies Association between Genomic Regions at CTCF and CACNB2 and Schizophrenia. P L o S Genetics, 10(6), e1004345. https://doi.org/10.1371/journal.pgen.1004345

Julienne, H., Laville, V., McCaw, Z. R., He, Z., Guillemot, V., Lasry, C., Ziyatdinov, A., Nerin, C., Vaysse, A., Lechat, P., Ménager, H., Le Goff, W., Dube, M.-P., Kraft, P., Ionita-Laza, I., Vilhjálmsson, B. J. & Aschard, H. (2021). Multitrait GWAS to connect disease variants and biological mechanisms. PLOS Genetics, 17(8), Article e1009713. https://doi.org/10.1371/journal.pgen.1009713

Jørgensen, F. G., Hobolth, A., Hornshøj, H., Bendixen, C., Fredholm, M. & Schierup, M. H. (2005). Comparative analysis of protein coding sequences from Human, Mouse and the domesticated Pig. B M C Biology, 3(2). https://doi.org/10.1186/1741-7007-3-2

Jørgensen, F. G., Schierup, M. H. & Clark, A. G. (2006). Heterogeneity in Regional GC Content and Differential Usage of Codons and Amino Acids in GC-Poor and GC-Rich Regions of the Genome of Apis mellifera. Molecular Biology and Evolution. https://doi.org/10.1093/molbev/msl190

Jørgensen, F. G., Schierup, M. H. & Clark, A. G. (2007). Heterogeneity in Regional GC Content and Differential Usage of Codons and Amino Acids in GC-Poor and GC-Rich Regions of the Genome of Apis mellifera. Molecular Biology and Evolution, 24(2), 611-619. https://doi.org/10.1093/molbev/msl190

Jørgensen, F. G. & Schierup, M. H. (2009). Increased rate of human mutations where DNA and RNA polymerases collide. Trends in Genetics, 25(12), 523-527. https://doi.org/10.1016/j.tig.2009.10.002

Jørgensen, F. G., Mailund, T., Schierup, M. H. & Kjærgaard, P. C. (2013). Hvor kommer du fra? En undersøgelse af danskernes genetiske historie. Biofag, 3, 18-20. http://hvorkommerdufra.dk/fileadmin/hvorkommerdufra.dk/Artikel_fra_biofag.pdf

Jørgensen, C. S., Horsdal, H. T., Rajagopal, V. M., Grove, J., Als, T. D., Kamperis, K., Nyegaard, M., Walters, G. B., Eðvarðsson, V. Ö., Stefánsson, H., Nordentoft, M., Hougaard, D. M., Werge, T., Mors, O., Mortensen, P. B., Agerbo, E., Rittig, S., Stefánsson, K., Børglum, A. D. ... Christensen, J. H. (2021). Identification of genetic loci associated with nocturnal enuresis: a genome-wide association study. The Lancet Child and Adolescent Health, 5(3), 201-209. https://doi.org/10.1016/S2352-4642(20)30350-3

Jordan, V. E., Walker, J. A., Beckstrom, T. O., Steely, C. J., McDaniel, C. L., St Romain, C. P., The Baboon Genome Analysis Consortium, Worley, K. C., Phillips-Conroy, J., Jolly, C. J., Rogers, J., Konkel, M. K. & Batzer, M. A. (2018). A computational reconstruction of Papio phylogeny using Alu insertion polymorphisms. Mobile DNA, 9(1), Article 13. https://doi.org/10.1186/s13100-018-0118-3

Displaying results 651 to 700 out of 1317

Revised 21.08.2024

Palle Villesen