Publications

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Kristensen, T. G. & Pedersen, C. S. (2009). Optimal Overlay of Ligands with Flexible Bonds Using Differential Evolution. In J. Zhang, G.-Z. Li & J. Y. Yang (Eds.), Proceedings of the 2009 International Joint conferences on Bioinformatics, System biology and Intelligent Computing (IJCBS2009) (pp. 331-334). IEEE Computer Society Press. https://doi.org/10.1109/IJCBS.2009.36

Kristensen, T. G., Pedersen, C. S., Thomsen, R. & Christensen, M. H. (2009). Largest Common Chemical Feature Subtree as a Virtual Screening Method. Poster session presented at 17th Annual International Conference on Intelligent Systems for Molecular Bioligy (ISMB) & 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden. http://www.iscb.org/ismbeccb2009/poster_list.php?cat=C

Kristensen, T. G., Nielsen, J. & Pedersen, C. N. S. (2009). A tree based method for the rapid screening of chemical fingerprints. Lecture Notes in Computer Science, 5724, 194-205. https://doi.org/10.1007/978-3-642-04241-6_17

Kristensen, L. S., Wojdacz, T. K., Thestrup, B. B., Wiuf, C. H., Hager, H. & Hansen, L. L. (2009). Quality assessment of DNA derived from up to 30 years old formalin fixed paraffin embedded (FFPE) tissue for PCR-based methylation analysis using SMART-MSP and MS-HRM. B M C Cancer, 9(453), 453.

Kristensen, T. G. (2010). Transforming Tanimoto queries on real valued vectors to range queries in Euclidian space. Journal of Mathematical Chemistry, 48(2), 287-289. https://doi.org/10.1007/s10910-010-9668-4

Kristensen, T. G. & Pedersen, C. N. S. (2010). Data Structures for Accelerating Tanimoto Queries on Real Valued Vectors. In V. Moulton & M. Singh (Eds.), Algorithms in Bioinformatics: 10th International Workshop (WABI 2010) (Vol. 6293, pp. 28-39). Springer.

Kristensen, T. G., Nielsen, J. & Pedersen, C. N. S. (2010). A tree-based method for the rapid screening of chemical fingerprints. Algorithms for Molecular Biology, 5(9). https://doi.org/10.1186/1748-7188-5-9

Kristensen, T. G., Nielsen, J. & Pedersen, C. N. S. (2011). Using Inverted Indices for Accelerating LINGO Calculations. Journal of Chemical Information and Modeling, 51(3), 597-600. https://doi.org/10.1021/ci100437e

Kristensen, T. G. (2011). Virtual screening algorithms. Department of Computer Science, Aarhus University.

Kristensen, T. G., Nielsen, J. & Pedersen, C. N. S. (2013). Methods for Similarity-Based Virtual Screening. Computational and Structural Biotechnology Journal, 5(6). https://doi.org/10.5936/csbj.201302009

Kringelbach, T., Højgaard, M., Rohrberg, K., Spanggaard, I., Laursen, B. E., Ladekarl, M., Haslund, C. A., Harsløf, L., Belcaid, L., Gehl, J., Søndergaard, L., Eefsen, R. L., Hansen, K. H., Kodahl, A. R., Jensen, L. H., Holt, M. I., Oellegaard, T. H., Yde, C. W., Ahlborn, L. B. & Lassen, U. (2023). ProTarget: a Danish Nationwide Clinical Trial on Targeted Cancer Treatment based on genomic profiling – a national, phase 2, prospective, multi-drug, non-randomized, open-label basket trial. BMC Cancer, 23(1), Article 182. https://doi.org/10.1186/s12885-023-10632-9

Kresge, H. A., Blostein, F., Goleva, S., Albiñana, C., Revez, J. A., Wray, N. R., Vilhjálmsson, B. J., Zhu, Z., McGrath, J. J. & Davis, L. K. (2024). Phenomewide Association Study of Health Outcomes Associated With the Genetic Correlates of 25 Hydroxyvitamin D Concentration and Vitamin D Binding Protein Concentration. Twin Research and Human Genetics, 27(2), 69-79. https://doi.org/10.1017/thg.2024.19

Kraft, J. F., Lie, M. A. & Schiøtt, H. B. (2009). Molecular Docking Simulations: Improvement of methodologies for membrane proteins. Poster session presented at iNANO autumn school 2007.

Kraft, J. F., Vestergaard, M., Schiøtt, B. & Thøgersen, L. (2012). Modeling the Self-assembly and Stability of DHPC Micelles using Atomic Resolution and Coarse Grained MD Simulations. Journal of Chemical Theory and Computation, 8(5), 1556–1569. https://doi.org/10.1021/ct200921u

Kousholt, A., Ziegel, J., Kiderlen, M. & Jensen, E. B. V. (2017). Stereological estimation of mean particle volume tensors in R3 from vertical sections. In E. B. V. Jensen & M. Kiderlen (Eds.), Tensor Valuations and Their Applications in Stochastic Geometry and Imaging (Vol. 2177, pp. 423-434). Springer.

Kongsted, H., Foldager, L. & Sørensen, J. T., (2018). Identifikation af mulighederne for at minimere forekomsten af læsioner hos økologiske svin og frilandssvin (del 2), No. 2018-760-000666, 28 p., Jun 04, 2018.

Kongsted, H., Foldager, L. & Sørensen, J. T. (2018). Sygdomsproblemer hos økologiske grise og frilandsgrise. DCA - Nationalt Center for Fødevarer og Jordbrug. DCA rapport No. 128 http://web.agrsci.dk/djfpublikation/index.asp?action=show&id=1271

Kongsted, H., Foldager, L. & Sørensen, J. T. (2019). Tail bites in free-range based finisher pig systems: prevalence and risk factors. Abstract from 11th symposium of porcine health management, Utrecht, Netherlands.

Kongsted, H., Foldager, L. & Sørensen, J. T. (2020). Data from routine meat inspection is a poor indicator of the prevalence of tail lesions in undocked pigs. Porcine Health Management, 6(1), Article 10. https://doi.org/10.1186/s40813-020-00149-z

Kongsted, H., Foldager, L. & Sørensen, J. T. (2020). Kødkontrollen fanger ikke forekomst af halebid på hele haler. Dansk Veterinærtidsskrift, 2020(7), 18-19. https://dvt.ddd.dk/bladarkiv/2020/nr-07/koedkontrollen-fanger-ikke-forekomst-af-halebid-paa-hele-haler/

Kongsted, H., Krogh, M. A., Nielsen, C. L., Henriksen, B. I. F., Foldager, L. & Sørensen, J. T. (2022). Danish welfare-label pig production systems: Usage of antibiotics and occurrence of disease. 83-91. Paper presented at 20th Congress of the International Society for Animal Hygiene , Berlin, Germany.

Kong, A., Frigge, M. L., Masson, G., Besenbacher, S., Sulem, P., Magnusson, G., Gudjonsson, S. A., Sigurdsson, A., Jonasdottir, A., Jonasdottir, A., Wong, W. S. W., Sigurdsson, G., Walters, G. B., Steinberg, S., Helgason, H., Thorleifsson, G., Gudbjartsson, D. F., Helgason, A., Magnusson, O. T. ... Stefansson, K. (2012). Rate of de novo mutations and the importance of father's age to disease risk. Nature, 488(7412), 471-5. https://doi.org/10.1038/nature11396

Kong, A., Thorleifsson, G., Frigge, M. L., Vilhjalmsson, B. J., Young, A. I., Thorgeirsson, T. E., Benonisdottir, S., Oddsson, A., Halldorsson, B. V., Masson, G., Gudbjartsson, D. F., Helgason, A., Bjornsdottir, G., Thorsteinsdottir, U. & Stefansson, K. (2018). The nature of nurture: Effects of parental genotypes. Science, 359(6374), 424-428. https://doi.org/10.1126/science.aan6877

Kofod Petersen, A., Forgie, A. H., Bindslev, D. A., Villesen, P. & Staun Larsen, L. (2023). Automatic tissue removal from 3D dental photoscans. Abstract from Trienial I.O.F.O.S. Congres of Forensic Odonto-Stomatology, Dubrovnik, Croatia. https://iofos.eu/wp-content/uploads/2023/07/IOFOS.-Book-of-abstracts.pdf

Kofod Petersen, A., Staun Larsen, L. & Villesen, P. (2023). Automated use of 3D data in forensic odontology identification. Abstract from PhD dag, Aarhus, Denmark. https://phd.health.au.dk/fileadmin/phd.health.au.dk/Health_NY_filliste/About_us/Events/PhD_Day_2023/Abstract_book_PhD_Day_2023.pdf

Kofod Petersen, A., Forgie, A. H., Bindslev, D. A., Villesen, P. & Staun Larsen, L. (2024). Automatic removal of soft tissue from 3D dental photo scans; an important step in automating future forensic odontology identification. Scientific Reports, 14, Article 12421. https://doi.org/10.1038/s41598-024-63198-2

Koed, K., Wiuf, C., Christensen, L. L., Wikman, F., Zieger, K., Jensen, K. M.-E., Maase, H. V. D. & Ørntoft, T. F. (2005). High-density single nucleotide polymorphism array defines novel stage and location-dependent allelic imbalances in human bladder tumors. Cancer Research, 65(1), 34-45.

Kodesh, A., Levine, S. Z., Khachadourian, V., Rahman, R., Schlessinger, A., O'Reilly, P. F., Grove, J., Schendel, D., Buxbaum, J. D., Croen, L., Reichenberg, A., Sandin, S. & Janecka, M. (2022). Maternal health around pregnancy and autism risk: a diagnosis-wide, population-based study. Psychological Medicine, 52(16), 4076-4084. https://doi.org/10.1017/S0033291721001021

Kobek-Kjeldager, C., Jensen, L. D., Foldager, L., Kaiser, M., Thodberg, K. & Herskin, M. S. (2022). Validation of behavioural sampling techniques for 20-25 kg pigs during 23-hour transport. In M. Kjosevski, S. Waiblinger & V. Ilieski (Eds.), Proceedings of the 55th Congress of the ISAE: Animal Behaviour and Beyond (pp. 167-167). https://www.applied-ethology.org/res/ISAE_2022_PROCEEDINGS_e-version.pdf

Kobek-Kjeldager, C., Jensen, L. D., Foldager, L., Thodberg, K., Petersen, D. L. S. & Herskin, M. S. (2023). Effects of journey duration and temperature during pre-slaughter transport on behaviour of cull sows in lairage. Research in Veterinary Science, 164, Article 105016. https://doi.org/10.1016/j.rvsc.2023.105016

Kobek-Kjeldager, C., Jensen, L. D., Foldager, L., Kaiser, M., Thodberg, K. & Herskin, M. S. (2024). Validation of behavioural sampling techniques for 20-25 kg pigs during transport. Livestock Science, 280, Article 105411. https://doi.org/10.1016/j.livsci.2024.105411

Kobek-Kjeldager, C., Jensen, L. D., Foldager, L., Gould, L. M., Thodberg, K., Schrøder-Petersen, D. L. & Herskin, M. S. (2024). Behaviour of cull sows during transport to slaughter – Effects of journey duration, a stationary period and temperature. Applied Animal Behaviour Science, 271, Article 106174. https://doi.org/10.1016/j.applanim.2024.106174

Knudsen, M. & Wiuf, C. (2008). A Markov chain approach to Randomly Grown Graphs. Journal of Applied Mathematics. https://doi.org/10.1155/2008/190836

Knudsen, M., Penner, R., Andersen, J. E. & Wiuf, C. H. (2008). An Algebraic Topology Approach to the Classification of Protein Domain Structures. Poster session presented at 6th Annual Rocky Mountain Bioinformatics Conference, Snowmass Village, Colorado, United States.

Knudsen, M. & Nielsen, R. (2009). Modeling cis- and trans-regulation in Drosophila species. In Tampere International Center for Signal Processing, TICSP Series 48 Tampere International Center for Signal Processing.

Knudsen, M. & Wiuf, C. H. (2010). The CATH Database. Human Genomics (Online).

Knudsen, M., Feliu, E., Wiuf, C. H. & Andersen, L. N. (2010). Steady States of Phosphorelays and Two-Component Systems. Poster session presented at The 11th International Conference on Systems Biology, Edinburgh, United Kingdom.

Knudsen, M. (2010). Mathematical Models of Protein Interaction Networks and Protein Domain Structures. Det Naturvidenskabelige Fakultet, Aarhus Universitet.

Knudsen, M., Feliu, E. & Wiuf, C. H. (2011). Mathematical Modeling of Phosphorelay Dynamics. Poster session presented at The XII International Congress on Molecular Systems Biology, Lleida, Spain.

Knudsen, M., Feliu, E. & Wiuf, C. H. (2012). Exact Analysis of Intrinsic Qualitative Features of Phosphorelays using Mathematical Models. Journal of Theoretical Biology, 300, 7-18. https://doi.org/10.1016/j.jtbi.2012.01.007

Knudsen, M., Søndergaard, D. & Pedersen, C. N. S. (2014). Combinatorics of Non-Ribosomal Peptide Synthetases.

Knudsen, M., Søndergaard, D. A., Tofting-Olesen, C., Hansen, F. T., Brodersen, D. E. & Pedersen, C. S. (2016). Computational discovery of specificity-conferring sites in non-ribosomal peptide synthetases. Bioinformatics, 32(3), 325-329. https://doi.org/10.1093/bioinformatics/btv600

Kjeldsen, K. U., Bataillon, T., Pinel, N., De Mita, S., Lund, M. B., Panitz, F., Bendixen, C., Stahl, D. A. & Schramm, A. (2012). Purifying selection and molecular adaptation in the genome of Verminephrobacter, the heritable symbiotic bacteria of earthworms. Genome Biology and Evolution, 4(3), 307-315. https://doi.org/10.1093/gbe/evs014

Kjeldgaard, M., Nissen, P., Thirup, S. & Nyborg, J. (1993). The crystal structure of elongation factor EF-Tu from Thermus aquaticus in the GTP conformation. Structure, 1(1), 35-50.

Kjeldbjerg Lassen, J., Bradshaw, R., Villesen, P. & Francese, S. (2023). Statistical Modelling Investigation of MALDI-MSI-Based Approaches for Document Examination. Molecules, 28(13), Article 5207. https://doi.org/10.3390/molecules28135207

Kjeldbjerg, A. L., Villesen, P., Aagaard, L. & Pedersen, F. S. (2007). An active 70 million year old viral infection in humans. Poster session presented at High Throughput Biology: Genomics, Fluxomics, Proteomics, and Interactomics, Denmark.

Kjeldbjerg, A., Villesen, P., Aagaard, L. & Pedersen, F. S. (2008). Gene conversion and purifying selection of a placenta-specific ERV-V envelope gene during simian evolution. B M C Evolutionary Biology, 8(1), 266. https://doi.org/10.1186/1471-2148-8-266

Kjældgaard, A. L., Pilely, K., Olsen, K. S., Jessen, A. H., Lauritsen, A. Ø., Pedersen, S. W., Svenstrup, K., Karlsborg, M., Thagesen, H., Blaabjerg, M., Theódórsdóttir, Á., Elmo, E. G., Møller, A. T., Bonefeld, L., Berg, M., Garred, P. & Møller, K. (2021). Prediction of survival in amyotrophic lateral sclerosis: a nationwide, Danish cohort study. BMC Neurology, 21(1), Article 164. https://doi.org/10.1186/s12883-021-02187-8

Kisistók, J., Christensen, D. S., Rasmussen, M. H., Duval, L., Aggerholm-Pedersen, N., Luczak, A. A., Sorensen, B. S., Jakobsen, M. R., Oellegaard, T. H. & Birkbak, N. J. (2023). Analysis of circulating tumor DNA during checkpoint inhibition in metastatic melanoma using a tumor-agnostic panel. Melanoma Research, 33(5), 364-374. https://doi.org/10.1097/CMR.0000000000000903

Kirkpatrick, M. & Bataillon, T. (1999). Artificial selection on phenotypically plastic traits. Genetics Research, 74(3), 265-70.

Displaying results 651 to 700 out of 1352

Revised 21.08.2024

Palle Villesen