Publications

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Johnson, S. S., Hebsgaard, M. B., Christensen, T. R., Mastepanov, M., Nielsen, R., Munch, K., Brand, T., Gilbert, M. T. P., Zuber, M. T., Bunce, M., Rønn, R., Gilichinsky, D., Froese, D. & Willerslev, E. (2008). Correction for Johnson et al., Ancient bacteria show evidence of DNA repair. Proceedings of the National Academy of Sciences (PNAS), 105(30). https://doi.org/10.1073/pnas.0804198105

Jin, X., He, M., Ferguson, B., Meng, Y., Ouyang, L., Ren, J., Mailund, T., Sun, F., Sun, L., Shen, J., Zhuo, M., Song, L., Wang, J., Ling, F., Zhu, Y., Hvilsom, C., Siegismund, H., Liu, X., Gong, Z. ... Wang, X. (2012). An effort to use human-based exome capture methods to analyze chimpanzee and macaque exomes. PLoS One, 7(7), e40637. https://doi.org/10.1371/journal.pone.0040637

Jimenez Mena, B., Hospital, F. & Bataillon, T. (2016). Heterogeneity of effective population size and its implications in conservation genetics and animal breeding. Conservation Genetics Resources, 8(1), 35-41. https://doi.org/10.1007/s12686-015-0508-5

Jimenez Mena, B., Tataru, P., Brøndum, R. F., Sahana, G., Guldbrandtsen, B. & Bataillon, T. (2016). One size fits all? Direct evidence for the heterogeneity of genetic drift throughout the genome. Biology Letters, 12(7), Article 20160426. https://doi.org/10.1098/rsbl.2016.0426

Jimenez Mena, B., Verrier, E. & Hospital, F. (2014). Facing the estimation of effective population size based on molecular markers: comparison of estimators.. Abstract from World Congress on Genetics Applied to Livestock Production, Vancouvers, Canada. https://asas.org/docs/default-source/wcgalp-posters/440_paper_9030_manuscript_372_0.pdf?sfvrsn=2

Jimenez Mena, B., Schad, K., Hanna, N. & Lacy, R. C. (2016). Pedigree analysis for the genetic management of group-living species. Ecology and Evolution, 6(10), 3067-3078. https://doi.org/10.1002/ece3.1831

Jimenez Mena, B. (2016). Estimation of the effective population size (Ne) and its application in the management of small populations.

Jessen, C. T., Foldager, L. & Riber, A. B. (2021). Effects of hatching on-farm on behaviour, first week performance, fear level and range use of organic broilers. Applied Animal Behaviour Science, 238, Article 105319. https://doi.org/10.1016/j.applanim.2021.105319

Jessen, C. T., Foldager, L. & Riber, A. B. (2021). Effects of hatching on-farm on performance and welfare of organic broilers. Poultry Science, 100(9), Article 101292. https://doi.org/10.1016/j.psj.2021.101292

Jespersen, A., Yilmaz, Z. & Vilhjálmsson, B. J. (2022). Harnessing the Power of Population Cohorts to Study the Relationship Between Endocrine-Metabolic Disorders and Depression. The American Journal of Psychiatry (Spanish Edition), 179(11), 788-790. https://doi.org/10.1176/appi.ajp.20220798

Jeppesen, L. D., Lildballe, D. L., Hatt, L., Hedegaard, J., Singh, R., Toft, C. L. F., Schelde, P., Pedersen, A. S., Knudsen, M. & Vogel, I. (2023). Noninvasive Prenatal Screening for Cystic Fibrosis Using Circulating Trophoblasts: Detection of the 50 Most Common Disease-Causing Variants. Obstetrical and Gynecological Survey, 78(7), 393-395. https://doi.org/10.1097/01.ogx.0000947140.57660.b6

Jensen, T. D., Li, J., Wang, K., Lindebjerg, J., Kølvraa, S., Bolund, L., Jakobsen, A., Bruun-Petersen, G., Li, S. & Crüger, D. G. (2011). Identification of chromosome aberrations in sporadic microsatellite stable and unstable colorectal cancers using array comparative genomic hybridization. Cancer Genetics and Cytogenetics, 204(2), 84-95. https://doi.org/10.1016/j.cancergencyto.2010.08.019

Jensen, K., Kristensen, L. M. & Mailund, T. (2012). The sweep-line state space exploration method. Theoretical Computer Science, 429, 169–179. https://doi.org/10.1016/j.tcs.2011.12.036

Jensen, J. M., Villesen, P., Friborg, R. M., Mailund, T., Besenbacher, S., Schierup, M. H. & Danish Pan-Genome Consortium (Jakob Grove, member of -) (2017). Assembly and analysis of 100 full MHC haplotypes from the Danish population. Genome Research, 27(9), 1597-1607. https://doi.org/10.1101/gr.218891.116

Jensen, M., Foldager, L., Jensen, C. & Deutch, S. R. (2022). Patient-reported outcomes for arthroscopic resection of the distal clavicle with concomitant arthroscopic subacromial decompression at a 2-year follow-up: a prospective study of 131 consecutive patients. JSES international, 6(6), 999-1004. https://doi.org/10.1016/j.jseint.2022.07.002

Jensen, M. B., Franchi, G. A., Larsen, M., Foldager, L. & Herskin, M. S. (2023). Effects of feed energy density, daily milking frequency, and a single injection of cabergoline on behavior and welfare in dairy cows at dry-off. Journal of Dairy Science, 106(12), 9136-9149. https://doi.org/10.3168/jds.2022-22835

Jensen, J. M. (2017). Reference free phasing and representation of complex variation.

Jefsen, O. H., Speed, M., Speed, D. & Østergaard, S. D. (2021). Bipolar disorder and cannabis use: A bidirectional two-sample Mendelian randomization study. Addiction Biology, 26(6), Article 13030. https://doi.org/10.1111/adb.13030

Jefsen, O. H., Holde, K., McGrath, J. J., Rajagopal, V. M., Albiñana, C., Vilhjálmsson, B. J., Grove, J., Agerbo, E., Yilmaz, Z., Plana-Ripoll, O., Munk-Olsen, T., Demontis, D., Børglum, A., Mors, O., Bulik, C. M., Mortensen, P. B. & Petersen, L. V. (2024). Polygenic risk of mental disorders and subject-specific school grades. Biological Psychiatry, 96(3), 222-229. https://doi.org/10.1016/j.biopsych.2023.11.020

Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., da Fonseca, R. R., Li, J., Zhang, F., Li, H., Zhou, L., Narula, N., Liu, L. ... Zhang, G. (2014). Whole-genome analyses resolve early branches in the tree of life of modern birds. Science, 346(6215), 1320-31. https://doi.org/10.1126/science.1253451

James, J., Esteve, D. C. & Eyre-Walker, A. (2017). DNA sequence diversity and the efficiency of natural selection in animal mitochondrial DNA. Heredity, 118(1), 88-95. https://doi.org/10.1038/hdy.2016.108

Jakobsen, H. J., Brorson, M., Bildsøe, H. K., Skibsted, J. & Hansen, M. R. (2008). Sensitivity Enhancement in Natural-Abundance Solid-State ³³S MAS NMR Spectroscopy Employing Adiabatic Inversion Pulses to the Satellite Transitions. Poster session presented at 49th Experimental NMR Conference (ENC), Asilomar, California, United States.

Jakobsen, H. J., Brorson, M., Bildsøe, H. K., Skibsted, J. & Hansen, M. R. (2008). Sensitivity Enhancement in Natural Abundance Solid-State ³³S MAS NMR Spectroscopy Employing Adiabatic Inversion Pulses to the Satellite Transitions. Abstract from 49^th Experimental NMR Conference, Asilomar, Pacific Grove, California, United States.

Jacobsen, I. S., Boesen, T., Mygind, T., Melkova, R., Birkelund, S., Christiansen, G. & Schierup, M. H. (2002). Determination of recombination in Mycoplasma hominis. Infect Genet Evol, 1, 277-85.

Jacobsen, L. M. W., Pujolar, J. M., Bernatchez, L., Munch, K., Jian, J., Niu, Y. & Hansen, M. M. (2014). Genomic footprints of speciation in Atlantic eels (Anguilla anguilla and A. Rostrata). Molecular Ecology, 23(19), 4785-4798. https://doi.org/10.1111/mec.12896

TRACERx Consortium (2024). Representation of genomic intratumor heterogeneity in multi-region non-small cell lung cancer patient-derived xenograft models. Nature Communications, 15(1), Article 4653. https://doi.org/10.1038/s41467-024-47547-3

Hvilsom, C., Qian, Y., Bataillon, T., Li, Y., Mailund, T., Sallé, B., Carlsen, F., Li, R., Zheng, H., Jiang, T., Jiang, H., Jin, X., Munch, K., Hobolth, A., Siegismund, H. R., Wang, J. & Schierup, M. H. (2012). Extensive X-linked adaptive evolution in central chimpanzees. Proceedings of the National Academy of Sciences (PNAS). https://doi.org/10.1073/pnas.1106877109

Hvidtjørn, D., Grove, J., Schendel, D., Schieve, L., Sværke, C., Ernst, E. & Thorsen, P. (2011). Risk of Autism Spectrum Disorders in children born after assisted conception. A population based follow-up study. Journal of Epidemiology & Community Health, 65(6), 497-502. https://doi.org/10.1136/jech.2009.093823

Hübel, C., Gaspar, H. A., Coleman, J. R. I., Finucane, H., Purves, K. L., Hanscombe, K. B., Prokopenko, I., Graff, M., Ngwa, J. S., Workalemahu, T., O'Reilly, P. F., Bulik, C. M., Breen, G., Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, Schizophrenia Working Group of the Psychiatric Genomics Consortium, Tourette Syndrome/Obsessive-Compulsive Disorder Working Group of the Psychiatric Genomics Consortium, MAGIC Investigators & Eating Disorders Working Group of the Psychiatric Genomics Consortium (2019). Genomics of body fat percentage may contribute to sex bias in anorexia nervosa. American Journal of Medical Genetics. Part B: Neuropsychiatric Genetics, 180(6), 428-438. https://doi.org/10.1002/ajmg.b.32709

Hübel, C., Gaspar, H. A., Coleman, J. R. I., Hanscombe, K. B., Purves, K., Prokopenko, I., Graff, M., Ngwa, J. S., Workalemahu, T., O’Reilly, P. F., Bulik, C. M., Breen, G., ADHD Working Group of the Psychiatric Genomics Consortium, Meta-Analyses of Glucose- and Insulin-related traits Consortium (MAGIC), Autism Working Group of the Psychiatric Genomics Consortium, Bipolar Disorder Working Group of the Psychiatric Genomics Consortium, Eating Disorders Working Group of the Psychiatric Genomics Consortium, Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, OCD & Tourette Syndrome Working Group of the Psychiatric Genomics Consortium ... International Headache Genetics Consortium (2019). Genetic correlations of psychiatric traits with body composition and glycemic traits are sex- and age-dependent. Nature Communications, 10(1), Article 5765. https://doi.org/10.1038/s41467-019-13544-0

Howard, D. M., Adams, M. J., Clarke, T.-K., Hafferty, J. D., Gibson, J., Shirali, M., Coleman, J. R. I., Hagenaars, S. P., Ward, J., Wigmore, E. M., Alloza, C., Shen, X., Barbu, M. C., Xu, E. Y., Whalley, H. C., Marioni, R. E., Porteous, D. J., Davies, G., Deary, I. J. ... 23andMe Research Team (2019). Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions. Nature Neuroscience, 22(3), 343-352. https://doi.org/10.1038/s41593-018-0326-7

Hougaard, B. K., Madsen, L. H., Fredslund, J., Schauser, L., Nielsen, A. M., Sandal, N. N., Bertioli, D., Blair, M., Tohme, J. & Stougaard, J. (2006). Development of Legume Anchor Markers: a tool for genetic mapping and comparative genomics driven by bioinformatics. Poster session presented at Plant Biotech Denmark Annual meeting 2006, København, Denmark.

Hougaard, B. K., Madsen, L. H., Fredslund, J., Schauser, L., Nielsen, A. M., Sandal, N. N., Rohde, T., Jacobsen, R. H. & Stougaard, J. (2007). Development of Legume Anchor Markers: a bioinformatic driven tool for genetic mapping and comparative genomics. Poster session presented at Plant Biotech Denmark Annual meeting 2007, København, Denmark.

Hougaard, B. K., Madsen, L. H., Fredslund, J., Schauser, L., Nielsen, A. M., Sandal, N. N., Rohde, T., Jacobsen, R. H., Bertioli, D. J., Tohme, J., Blair, M. & Stougaard, J. (2006). Development of Legume Anchor Markers: a bioinformatic driven tool for genetic mapping and comparative genomics. Poster session presented at 7th European Nitrogen Fixation Conference, Aarhus, Denmark.

Hougaard, B. K., Madsen, L. H., Fredslund, J., Schauser, L., Nielsen, A. M., Sandal, N. N., Rohde, T., Jacobsen, R. H., Bertioli, D. J., Tohme, J., Blair, M. & Stougaard, J. (2006). Development of Legume Anchor Markers: a bioinformatic driven tool for genetic mapping and comparative genomics. Poster session presented at Crop Genomics, Trait Analysis and Breeding, Hinxton, United Kingdom.

Hougaard, B. K., Madsen, L. H., Sandal, N., de Carvalho Moretzsohn, M., Fredslund, J., Schauser, L., Nielsen, A. M., Rohde, T., Sato, S., Tabata, S., Bertioli, D. J. & Stougaard, J. (2008). Legume anchor markers link syntenic regions between Phaseolus vulgaris, Lotus japonicus, Medicago truncatula and Arachis. Genetics, 179(4), 2299-312. https://doi.org/10.1534/genetics.108.090084

Høst, S., Olsen, J., Jansik, B., Thøgersen, L., Jørgensen, P. & Helgaker, T. (2008). The augmented Roothaan-Hall method for optimizing Hartree-Fock and Kohn-Sham density matrices. Journal of Chemical Physics, 129, 124106.

Horsdal, H. T., Albiñana, C., Zhu, Z., Boelt, S. G., Borbye-Lorenzen, N., Cohen, A. S., Skogstrand, K., Melgaard, L., MacSween, N. J., Thorbek, M. J., Plana-Ripoll, O., Petersen, L. V., Bulik, C. M., Børglum, A. D., Mors, O., Nordentoft, M., Werge, T., Moen, G.-H., D'Urso, S. ... McGrath, J. J. (2025). Convergent evidence linking neonatal vitamin D status and risk of neurodevelopmental disorders: a Danish case-cohort study. The Lancet Psychiatry, 12(6), 410-420. https://doi.org/10.1016/S2215-0366(25)00099-9

Hornshøj, H., Nielsen, M. M., Sinnott-Armstrong, N. A., Świtnicki, M. P., Juul, M., Madsen, T., Sallari, R., Kellis, M., Ørntoft, T., Hobolth, A. & Pedersen, J. S. (2018). Pan-cancer screen for mutations in non-coding elements with conservation and cancer specificity reveals correlations with expression and survival. npj Genomic Medicine, 3(1), 1. Article 40. https://doi.org/10.1038/s41525-017-0040-5

Holmstrup, M., Sørensen, J. G., Maraldo, K., Schmidt, I. K., Mason, S., Tietema, A., Smith, A. R., Emmett, B., Schmelz, R., Bataillon, T., Beier, C. & Ehlers, B. K. (2012). Increased frequency of drought reduces species richness of enchytraeid communities in both wet and dry heathland soils. Soil Biology & Biochemistry, 53, 43-49. https://doi.org/10.1016/j.soilbio.2012.05.001

Holmstrup, M., Sørensen, J. G., Schmidt, I. K., Nielsen, P. L., Mason, S., Tietema, A., Smith, A. R., Bataillon, T., Beier, C. & Ehlers, B. K. (2013). Soil microarthropods are only weakly impacted after 13 years of repeated drought treatment in wet and dry heathland soils. Soil Biology & Biochemistry, 66, 110-118. https://doi.org/10.1016/j.soilbio.2013.06.023

Holmstrup, M., Sørensen, J. G., Maraldo, K., Schmidt, I., Tietema, A., Smith, A., Schmelz, R., Bataillon, T. & Ehlers, B. (2012). Increased frequency of drought depletes species richness of enchytraeid communities in both wet and dry heathland soils. Soil Biology & Biochemistry, 53, 43-49. https://doi.org/10.1016/j.soilbio.2012.05.001

Hollensen, A. K., Thomsen, H. S., Lloret-Llinares, M., Kamstrup, A. B., Jensen, J. M., Luckmann, M., Birkmose, N., Palmfeldt, J., Jensen, T. H., Hansen, T. B. & Damgaard, C. K. (2020). circZNF827 nucleates a transcription inhibitory complex to balance neuronal differentiation. eLife, 9, 1-29. Article e58478. https://doi.org/10.7554/eLife.58478

Hollegaard, M., Grauholm, J., Børglum, A., Nyegaard, M., Nørgaard-Pedersen, B., Ørntoft, T., Mortensen, P. B., Wiuf, C., Mors, O., Didriksen, M., Thorsen, P. & Hougaard, D. M. (2009). Genome-wide scans using archived neonatal dried blood spot samples. BMC Genomics, 10, 297. https://doi.org/10.1186/1471-2164-10-297

Hollegaard, M. V., Grove, J., Grauholm, J., Kreiner-Moller, E., Bonnelykke, K., Nørgaard, M., Benfield, T. L., Norgaard-Pedersen, B., Mortensen, P. B., Mors, O., Sørensen, H. T., Harboe, Z. B., Børglum, A., Demontis, D., Ørntoft, T. F., Bisgaard, H. & Hougaard, D. M. (2011). Robustness of genome-wide scanning using archived dried blood spot samples as a DNA source. BMC Genetics, 12(1), 58. https://doi.org/10.1186/1471-2156-12-58

Hollegaard, M. V., Skogstrand, K., Thorsen, P., Nørgaard-Petersen, B., Hougaard, D. & Grove, J. (2013). Joint analysis of SNPs and proteins identifies regulatory IL18 gene variations decreasing the chance of spastic cerebral palsy. Human Mutation, 34(1).

Hollegaard, M. V., Grauholm, J., Nielsen, R., Grove, J., Mandrup, S. & Hougaard, D. M. (2013). Archived neonatal dried blood spot samples can be used for accurate whole genome and exome-targeted next-generation sequencing. Molecular Genetics and Metabolism, 110(1-2), 65-72. https://doi.org/10.1016/j.ymgme.2013.06.004

Ho-Huu, J., Ronfort, J., De Mita, S., Bataillon, T., Hochu, I., Weber, A. & Chantret, N. (2012). Contrasted patterns of selective pressure in three recent paralogous gene pairs in the Medicago genus (L.). BMC Evolutionary Biology, 12, 195. https://doi.org/10.1186/1471-2148-12-195

Høgslund, N., Radutoiu, S., Krusell, L., Voroshilova, V., Hannah, M. A., Goffard, N., Sanchez, D. H., Lippold, F., Ott, T., Sato, S., Tabata, S., Liboriussen, P., Lohmann, G. V., Schauser, L., Weiller, G. F., Udvardi, M. K. & Stougaard, J. (2009). Dissection of symbiosis and organ development by integrated transcriptome analysis of lotus japonicus mutant and wild-type plants. PLoS One, 4(8), e6556. https://doi.org/10.1371/journal.pone.0006556

Displaying results 751 to 800 out of 1390

Revised 13.01.2026

Palle Villesen