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Section for Bioinformatics and Computational Biology

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Schiøtt, B. & Lie, M. A. (2008). DFT Study of Solvation Effects on the Tautomeric Equlibrium and Catalytic Ylide Generation of Thiamin Models. Journal of Computational Chemistry, 29, 1037-1047.

Schepeler, T., Reinert, T., Ostenfeld, M. S., Christensen, L. L., Silahtaroglu, A. N., Dyrskjøt, L., Wiuf, C., Sørensen, F. J., Kruhøffer, M., Laurberg, S., Kauppinen, S., Ørntoft, T. F. & Andersen, C. L. (2008). Diagnostic and prognostic microRNAs in stage II colon cancer. Cancer Research, 68(15), 6416-24. https://doi.org/10.1158/0008-5472.CAN-07-6110

Ding, Z., Mailund, T. & Song, Y. (2008). Efficient Whole-Genome Association Mapping using Local Phylogenies for Unphased Genome Data. Bioinformatics, 2215-2221.

Stumpf, M. PH., Thorne, T., Silva, E., Stewart, R., An, HJ., Lappe, M. & Wiuf, C. H. (2008). Estimating the size of the human interactome. Proceedings of the National Academy of Sciences (PNAS), 105, 6059.

Christiansen, F. B. (2008). Evolutionær tilpasning. Matilde, (38), 16-19.

Penn, O., Stern, A., Rubinstein, N. D., Dutheil, J., Bacharach, E., Galtier, N. & Pupko, T. (2008). Evolutionary modeling of rate shifts reveals specificity determinants in HIV-1 subtypes. PLoS Computational Biology, 4(11), e1000214. https://doi.org/10.1371/journal.pcbi.1000214

Kjeldbjerg, A., Villesen, P., Aagaard, L. & Pedersen, F. S. (2008). Gene conversion and purifying selection of a placenta-specific ERV-V envelope gene during simian evolution. BMC Evolutionary Biology, 8(1), 266. https://doi.org/10.1186/1471-2148-8-266

Schierup, M. H. & Vekemans, X. (2008). Genomic consequences of selection on self-incompatibility genes. Current Opinion in Plant Biology, 116-122. https://doi.org/10.1016/j.pbi.2008.01.003

Madsen, B. E., Ramos, E. M., Boulard, M., Duda, K., Overgaard, J., Nordsmark, M., Wiuf, C. & Hansen, L. L. (2008). Germline mutation in RNASEL predicts increased risk of head and neck, uterine cervix and breast cancer. PLoS One, 3(6), e2492. https://doi.org/10.1371/journal.pone.0002492

Hobolth, A., Uyenoyama, M. K. & Wiuf, C. (2008). Importance sampling for the infinite sites model. Statistical Applications in Genetics and Molecular Biology, 7(1). https://doi.org/10.2202/1544-6115.1400

Herbsleb, M., Birkenkamp-Demtröder, K., Andersen, T. T., Wiuf, C., Hein, A.-M. K., Ørntoft, T. F. & Andersen, L. D. (2008). Increased cell motility and invasion upon knockdown of lipolysis stimulated lipoprotein receptor (LSR) in SW780 bladder cancer cells. BMC Medical Genomics, 1. https://doi.org/10.1186/1755-8794-1-31

Herbsleb, M., Birkenkamp-Demtroder, K., Thykjaer, T., Wiuf, C., Hein, A.-M. K., Orntoft, T. F. & Andersen, L. D. (2008). Increased cell motility and invasion upon knockdown of lipolysis stimulated lipoprotein receptor (LSR) in SW780 bladder cancer cells. BMC Medical Genomics, 1, 31. https://doi.org/10.1186/1755-8794-1-31

de Groot, S., Mailund, T., Lunter, G. & Hein, J. (2008). Investigating Selection on Viruses: A Statistical Alignment Approach. BMC Bioinformatics, 9(308).

Christiansen, F. (2008). Leder. Matilde, (34), 2.

Hougaard, B. K., Madsen, L. H., Sandal, N., de Carvalho Moretzsohn, M., Fredslund, J., Schauser, L., Nielsen, A. M., Rohde, T., Sato, S., Tabata, S., Bertioli, D. J. & Stougaard, J. (2008). Legume anchor markers link syntenic regions between Phaseolus vulgaris, Lotus japonicus, Medicago truncatula and Arachis. Genetics, 179(4), 2299-312. https://doi.org/10.1534/genetics.108.090084

Besenbacher, S., Mailund, T. & Schierup, M. H. (2008). Local Phylogeny Mapping of Quantitative Traits: Higher Accuracy and Better Ranking Than Single Marker Association in Genomewide Scans. Genetics. https://doi.org/10.1534/genetics.108.092643

Musgaard, M., Thøgersen, L. & Schiøtt, H. B. (2008). Molecular Dynamics Simulations of the E2 Form of the Ca²⁺-ATPase: Preliminary Results. Poster session presented at 12^th International ATPase Conference. Na,K-ATPase and Related Transport ATPases of P-type: Structures, Mechanisms, and Roles in Health and Disease, Aarhus, Denmark.

Dutheil, J. & Boussau, B. (2008). Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs. BMC Evolutionary Biology, 8, 255. https://doi.org/10.1186/1471-2148-8-255

Li, J., Gromov, P., Gromova, I., Moreira, J. M., Timmermans-Wielenga, V., Rank, F., Wang, K., Li, S., Li, H., Wiuf, C., Yang, H., Zhang, X., Bolund, L. & Celis, J. E. (2008). Omics-based profiling of carcinoma of the breast and matched regional lymph node metastasis. Proteomics, 8(23-24), 5038-52. https://doi.org/10.1002/pmic.200800303

Andersen, L. N. & Asmussen, S. (2008). Parallel computing, failure recovery and extreme values. Journal of Statistical Theory and Practice, 2(2), 279-292.

Thøgersen, L., Schiøtt, B., Vosegaard, T., Nielsen, N. C. & Tajkhorshid, E. (2008). Peptide Aggregation and Pore Formation in a Lipid Bilayer: A Combined Coarse-Grained and All Atom Molecular Dynamics Study. Biophysical Journal, 95(9), 4337-4347. https://doi.org/10.1529/biophysj.108.133330

Simonsen, M., Mailund, T. & Pedersen, C. S. (2008). Rapid Neighbour-Joining. In Proceedings of the 8th International Workshop on Algorithms in Bioinformatics (WABI) (pp. 113-122)

Castric, V., Bechsgaard, J., Schierup, M. H. & Vekemans, X. (2008). Repeated adaptive introgression at a gene under multiallelic balancing selection. PLoS Genetics, 4(8), e1000168. https://doi.org/10.1371/journal.pgen.1000168

Vosegaard, T., Bertelsen, K., Pedersen, J. M., Thøgersen, L., Schiøtt, B., Tajkhorshid, E., Skrydstrup, T. & Nielsen, N. C. (2008). Resolution Enhancement in Solid-State NMR of Oriented Membrane Proteins by Anisotropic Differential Linebroadening. Journal of the American Chemical Society, 130, 5028-5029.

Preker, P., Nielsen, J., Kammler, S., Lykke-Andersen, S., Christensen, M. S., Mapendano, C. K., Schierup, M. H. & Jensen, T. H. (2008). RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters. Science, 322(5909), 1851-1854. https://doi.org/10.1126/science.1164096

Foldager, L., Steffensen, R. N., Thiel, S., Als, T. D., Kristensen, A. S., Straarup, S., Nielsen, H. J., Nordentoft, M., Mortensen, P. B., Rosenberg, R., Mors, O. & Jensenius, J. C. (2008). Schizophrenia and innate immune defense: association study of mannan-bindinglectin (MBL) and MBL-associated serine proteases-2 (MASP-2) deficiency. In WCPG 2008 Abstract Book (pp. 225)

Schierup, M. H., Bechsgaard, J. S. & Christiansen, F. B. (2008). Selection at work in self-incompatible Arabidopsis lyrata. II. Spatial distribution of S haplotypes in Iceland. Genetics, 180(2), 1051-9. https://doi.org/10.1534/genetics.108.088799

Jakobsen, H. J., Brorson, M., Bildsøe, H. K., Skibsted, J. & Hansen, M. R. (2008). Sensitivity Enhancement in Natural Abundance Solid-State ³³S MAS NMR Spectroscopy Employing Adiabatic Inversion Pulses to the Satellite Transitions. Abstract from 49^th Experimental NMR Conference, Asilomar, Pacific Grove, California, United States.

Jakobsen, H. J., Brorson, M., Bildsøe, H. K., Skibsted, J. & Hansen, M. R. (2008). Sensitivity Enhancement in Natural-Abundance Solid-State ³³S MAS NMR Spectroscopy Employing Adiabatic Inversion Pulses to the Satellite Transitions. Poster session presented at 49th Experimental NMR Conference (ENC), Asilomar, California, United States.

Madsen, B. E., Villesen, P. & Wiuf, C. (2008). Short tandem repeats in human exons: a target for disease mutations. BMC Genomics, 9, 410. https://doi.org/10.1186/1471-2164-9-410

Villesen, P., Madsen, B. E. & Wiuf, C. H. (2008). Short Tandem Repeats in Human Exons: A Target for Disease Mutations. Poster session presented at Frontiers in genomics, Denmark.

Nielsen, J. & Mailund, T. (2008). SNPFile - A software library and file format for large scale association mapping and population genetics studies. BMC Bioinformatics, 9(526), 1-11. https://doi.org/10.1186/1471-2105-9-526

Penner, R., Andersen, J. E., Wiuf, C. H. & Knudsen, M. (2008). System and method for modelling a molecule with a graph. (Patent No. PA 2008 01009).

Christensen, L. L., Madsen, B. E., Wikman, F. P., Wiuf, C., Koed, K., Tjønneland, A., Olsen, A. V., Syvänen, A.-C., Andersen, C. L. & Orntoft, T. F. (2008). The association between genetic variants in hMLH1 and hMSH2 and the development of sporadic colorectal cancer in the Danish population. BMC Medical Genetics, 9, 52. https://doi.org/10.1186/1471-2350-9-52

Høst, S., Olsen, J., Jansik, B., Thøgersen, L., Jørgensen, P. & Helgaker, T. (2008). The augmented Roothaan-Hall method for optimizing Hartree-Fock and Kohn-Sham density matrices. Journal of Chemical Physics, 129, 124106.

Christiansen, F. (2008). Theories of Population Variation in Genes and Genomes. Princeton University Press.

Leppälä, J., Bechsgaard, J. S., Schierup, M. H. & Savolainen, O. (2008). Transmission ratio distortion in Arabidopsis lyrata: effects of population divergence and the S-locus. Heredity, 100, 71-78.

Villesen, P., Madsen, B. E. & Wiuf, C. H. (2008). Ultra short tandem repeats: A target for disease mutations. Poster session presented at 9th International Conference on Systems Biology, Gothenburg, Sweden.

Mansilla, F., Lamy, P., Ørntoft, T. F. & Birkenkamp-Demtröder, K. (2008). Upregulation of genes involved in rRNA processing in colon cancer. Poster session presented at EACR Annual Meeting of the European Association of Cancer Research, Lyon, France.

Nilsson, J., Sengupta, J., Gursky, R., Kjeldgaard, M., Nissen, P. & Frank, J. (2008). Visualization of the eEF2-80S ribosome transition-state complex by cryo-electron microscopy. Journal of Molecular Biology, 382(1), 179-187.

Ehlers, B. & Schierup, M. H. (2008). When gametophytic self-incompatibility meets gynodioecy. Genetics Research, 90(1), 27-35. https://doi.org/10.1017/S0016672307009007

Brameier, M. & Wiuf, C. (2007). Ab initio identification of human micoRNAs based on structure motifs.. Poster session presented at Bioinformatics Conference 2007, Umeå, Sweden.

Brameier, M. & Wiuf, C. (2007). Ab initio identification of human micoRNAs based on structure motifs.. Poster session presented at ISMB/ECCB 2007, Wien, Austria.

Brameier, M. & Wiuf, C. (2007). Ab initio identification of human miRNAs for genome scanning based on structure motifs. BMC. Bioinformatics, 8(478).

De Mita, S., Santoni, S., Ronfort, J. & Bataillon, T. (2007). Adaptive evolution of the symbiotic gene NORK is not correlated with shifts of rhizobial specificity in the genus Medicago. BMC Evolutionary Biology, 7. https://doi.org/10.1186/1471-2148-7-210

Lamy, P., Andersen, C. L., Andersen, L. D., Tørring, N. & Wiuf, C. (2007). A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays. BMC Bioinformatics, 8(434).

Kjeldbjerg, A. L., Villesen, P., Aagaard, L. & Pedersen, F. S. (2007). An active 70 million year old viral infection in humans. Poster session presented at High Throughput Biology: Genomics, Fluxomics, Proteomics, and Interactomics, Denmark.

Wang, K., Li, J., Wiuf, C. & Bolund, L. (2007). Analysis of Array CGH Data, presented at PhD Annual Day, Graduate School of Health, University of Aarhus.. Poster session presented at Analysis of Array CGH Data, presented at PhD Annual Day, Graduate School of Health, University of Aarhus., Denmark.

McCauley, S., de Groot, S., Mailund, T. & Hein, J. (2007). Annotation of selection strengths in viral genomes. Bioinformatics, 23(22), 2978-2986. https://doi.org/10.1093/bioinformatics/btm472

Madsen, B. E., Villesen, P. & Wiuf, C. (2007). A periodic pattern of SNPs in the human genome. Poster session presented at High Throughput Biology: Genomics, Fluxomics, Proteomics, and Interactomics, Vejle, Denmark.

Displaying results 1051 to 1100 out of 1417

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Revised 13.01.2026

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Palle Villesen