Publications

Sort by: Date | Author | Title

Mailund & Pedersen, C. N. S. (2004). QDist—Quartet Distance Between Evolutionary Trees. Bioinformatics, 20(10), 1636-1637.

Mailund & Pedersen, C. N. S. (2004). QuickJoin—Fast Neighbour-Joining Tree Reconstruction. Bioinformatics, 20(17), 3261-3262.

Besenbacher, S., Mailund, T., Westh-Nielsen, L. & Pedersen, C. S. (2004). RBT -- A tool for building refined Buneman trees. Bioinformatics, doi:10.1093/bti195, in press.

Mailund, T. (2004). SplitDist—Calculating Split-Distances for Sets of Trees.

Christensen, O. F., Cassiani, G., Diggle, P. J., Ribeiro, P. J. & Andreotti, G. (2004). Statistical estimation of the relative efficiency of natural attenuation mechanisms in contaminated aquifers. Stochastic environmental research and risk assessment (SERRA), 18, 339-350.

Brown, P. E., Christensen, O. F., Clough, H. E., Diggle, P. J., Hart, C. A., Hazel, S., Kemp, R., Leatherbarrow, A. J. H., Moore, A., Sutherst, J., Turner, J., Williams, N. J., Wright, E. J. & French, N. P. (2004). The frequency and spatial distribution of environmental campylobacter spp. Applied and Environmental Microbiology, 70, 6501-6511.

Rafnar, T., Thorlacius, S., Steingrimsson, E., Schierup, M. H., Madsen, J. N., Calian, V., Eldon, B. J., Jonsson, T., Hein, J. & Thorgeirsson, S. S. (2004). The Icelandic Cancer Project--a population-wide approach to studying cancer. Nat Rev Cancer Jun, 4(6), 488-492.

Wiuf, C., Zhao, K., Innan, H. & Nordborg, M. (2004). The probability and chromosomal extent of trans-specific polymorphisms. Genetics, 168, 2363-2372.

Thøgersen, L., Olsen, J., Yeager, D., Jørgensen, P., Salek, P. & Helgaker, T. (2004). The trust-region self-consistent field method: Towards a black-box optimization in Hartree-Fock and Kohn-Sham theories. Journal of Chemical Physics, 121, 16-27.

Bechsgaard, J., Bataillon, T. & Schierup, M. H. (2004). Uneven segregation of sporophytic self-incompatibility alleles in arabidopsis lyrata. Journal of Evolutionary Biology, 17(3), 554-561.

Bechsgaard, J., Bataillon, T. & Schierup, M. H. (2004). Uneven segregation of sporophytic self-incompatibility alleles in Arabidopsis lyrata. J. Evol. Biol., 17, 554-561.

Wiuf, C. & Posada, D. (2003). A coalescent model of hotspot recombination. Genetics 164: 407-417. Genetics, 164, 407-417.

Forsberg, R. & Christiansen, F. B. (2003). A codon-based model of host-specific selection in parasites, with an application to the influenza A virus. Mol. Biol. Evol., 20(8), 1252-1259.

Fredslund, J., Hein, J. & Scharling, T. (2003). A large version of the small parsimony problem. In Proceedings of the 3rd workshop on algorithms in bioinformatics (WABI 2003) (pp. 417-432)

Eskildsen, S., Justesen, J., Schierup, M. H. & Hartmann, R. (2003). Characterization of the 2'-5'-oligoadenylate synthetase ubiquitin-like family. Nucleic Acids Research, 31(12), 3166-3173.

Eskildsen, S., Justesen, J., Schierup, M. H. & Hartmann, R. (2003). Characterization of the 2′-5′-oligoadenylate synthetase ubiquitin-like family. Nucl. Acids Res., 31, 3166-3173.

Brodal, G. S., Fagerberg, R. & Pedersen, C. N. S. (2003). Computing the Quartet Distance Between Evolutionary Trees in Time O(n log n). Algorithmica, 38(2), 377-395. https://doi.org/10.1007/s00453-003-1065-y

Fredslund, J. (2003). Den Hotteste Forskning.

Fredslund, J. & Hein, J. (2003). Determining the Optimal Set of Indels Explaining the Gaps in a Multiple Alignment Using Affine Gap Cost Function. Poster session presented at International Conference on Research in Computational Molecular Biology (RECOMB 2003), Berlin, Germany.

Willerslev, E., Hansen, AJ., Binladen, J., Brand, TB., Gilbert, MTP., Shapiro, B., Bunce, M., Wiuf, C., Gilichinsky, DA. & Cooper, A. (2003). Diverse plant and animal genetic records from holocene and pleistocene sediments. Kexue (Shanghai), 300, 791-795.

Charlesworth, D., Mable, B. K., Schierup, M. H., Bartolomé, C., Awadalla, P. & Schierup, M. H. (2003). Diversity and linkage of genes in the self-incompatibility gene family in Arabidopsis lyrata. Genetics, 164, 1519-1535.

Kristensen, L. M. & Mailund (2003). Efficient Path Finding with the Sweep-Line Method using External Storage. In Proceedings of International Conference on Formal Engineering Methods (ICFEM 2003) (pp. 319-337)

Mable, B. K., Schierup, M. H. & Charlesworth, D. (2003). Estimating the number, frequency, and dominance of S-alleles in a natural population of Arabidopsis lyrata (Brassicaceae) with sporophytic control of self-incompatibility. Heredity, 90, 422-431. http://www.nature.com/hdy

Caprani, O., Fredslund, J., Jacobsen, J., Kramhøft, L., Lunding, R. B., Ilsø, J. M. & Wahlberg, M. (2003). Evolution of Computer Bugs – an Interdisciplinary Team Work. In K. H. Madsen & L. Qvortrup (Eds.), Behind the Scenes of Multimedia Production (pp. 186-215). Springer.

Charlesworth, D., Bartolomé, C., Schierup, M. H. & Mable, B. K. (2003). Haplotype structure of the stigmatic self-incompatibility gene in natural populations of Arabidopsis lyrata. Mol. Biol. Evol., 20(11), 1741-1753.

Wiuf, C. (2003). Inferring population history from geneaological trees. Journal of Mathematical Biology, 46, 241-264. https://doi.org/10.1007/s00285-002-0180-8

Christiansen, F. B. (2003). Lecture Notes in Population Genetics. Eget.

Glémin, S., Ronfort, J. & Bataillon, T. (2003). Patterns of inbreeding depression and architecture of the load in subdivided populations. Genetics, 165(4), 2193-212.

Villesen, P. & Boomsma, JJ. (2003). Patterns of male parentage in the fungus-growing ants. Behavioral Ecology and Sociobiology, 53(4), 246-253.

Schierup, M. H. & Forsberg, R. (2003). Recombination and phylogenetic analysis of HIV-1. Paper presented at Atti dei Convegni Lincei - Tavola rotonda nell'ambito della Conferenza annuale della Ricerca, Roma 28-29 settember, 2001.

Richman, A. D., Herrera, L. G., Nash, D. & Schierup, M. H. (2003). Relative roles of mutation and recombination in generating allelic polymorphism at an MHC class II locus in Peromyscus maniculatus. Genetetical Research, Camb, 82, 89-99.

Posada, D. & Wiuf, C. (2003). Simulating haplotype blocks in the human genome. Bioinformatics, 19(2), 289-290.

Wiuf, C., Laidlaw, Z. & Stumpf, MPH. (2003). Some notes on the combinatorial properties of haplotype tagging. Math. Biosci., 185, 205-216.

Brodal, G. S., Fagerberg, R., Mailund, T., Pedersen, C. N. S. & Phillips, D. (2003). Speeding Up Neighbour-Joining Tree Construction.

Wiuf, C. (2003). The age of a rare mutation. In PJ. Green, NL. Hjort & S. Richardson (Eds.), Highly Structured Stochastic Systems (Vol. 27, pp. 417-422). Oxford University Press.

Borisov, A. Y., Madsen, L. H., Tsyganov, V. E., Umehara, Y., Voroshilova, V. A., Batagov, A. O., Sandal, N. N., Mortensen, A., Schauser, L., Ellis, N., Tikhonovich, I. A. & Stougaard, J. (2003). The Sym35 gene required for root nodule development in Pisum sativum is an ortholog of Nin from Lotus japonicus. Plant Physiology, 131, 1009-1017.

Mailund & Kristensen, L. M. (2002). A Compositional Sweep-Line State Space Exploration Method. In Proceedings of Formal Description Techniques for Distributed Systems and Communication Protocols (FORTE 2002) (pp. 327-343)

Fredslund, J. & Matarić, M. J. (2002). A General Algorithm for Robot Formations Using Local Sensing and Minimal Communication. Transactions on Robotics and Automation, Special Issue on Multi Robot Systems, 18(5), 837-846.

Mailund & Kristensen, L. M. (2002). A Generalised Sweep-Line Method for Safety Properties. In Proceedings of Formal Methods Europe (FME 2002) (pp. 549-567)

Christiansen, F. B., Pedersen, C. N. S., Schauser, L. & Schierup, M. H. (2002). Bioinformatik ved Aarhus Universitet: Etablering af Center for Bioinformatik og en 2-årig kandidatuddannelse. Biozoom, 5(3), 12-16.

Schultz, T. R., Solomon, S. A., Mueller, U. G., Villesen, P., Boomsma, JJ., Adams, R. M. M. & Norden, B. (2002). Cryptic speciation in the fungus-growing ant Cyphomyrmex longiscapus Weber and Cyphomyrmex muelleri Schultz and Solomon, new species (Formicidae, Attini). Insectes Sociaux, 49, 331-343.

Jacobsen, I. S., Boesen, T., Mygind, T., Melkova, R., Birkelund, S., Christiansen, G. & Schierup, M. H. (2002). Determination of recombination in Mycoplasma hominis. Infection, Genetics and Evolution, 1, 277-85.

Thuillet, A.-C., Bru, D., David, J., Roumet, P., Santoni, S., Sourdille, P. & Bataillon, T. (2002). Direct estimation of mutation rate for 10 microsatellite loci in durum wheat, Triticum turgidum (L.) Thell. ssp durum desf. Molecular Biology and Evolution, 19(1), 122-5.

Fredslund, J. & Matarić, M. J. (2002). Huey, Dewey, Louie, and GUI – Commanding Robot Formations. In Proceedings of the 2002 IEEE International Conference on Robotics and Automation (ICRA'02) IEEE.

Villesen, P., Murakami, T., Schultz, T. R. & Boomsma, J. J. (2002). Identifying the transition between single and multiple mating of queens in fungus-growing ants. Proceedings of the Royal Society B: Biological Sciences, 269(1500), 1541-1548.

Villesen, P., Gertsch, P. J. & Boomsma, JJ. (2002). Microsatellite primers for fungus-growing ants. Molecular Ecology Resources, 2(3), 320-322.

Wiuf, C. (2002). On the minimum number of topologies explaining a sample of DNA sequences. Theor Pop Biol, 62, 357-363.

Boesen, I. Z., Søgaard, T., Mygind, T., Melkova, R., Birkelund, S., Schierup, M. H. & Christiansen, G. (2002). Recombination in Mycoplasma hominis. Infection, Genetics and Evolution, 1, 277-285. http://www.elsevier.com/locate/meegid

Hein, J., Pedersen, C. N. S. & Jensen, J. L. (2002). Recursions for Statistical Multiple Alignment. Proceedings of the National Academy of Sciences (PNAS), 100(25), 14960-14965.

Hein, J. & Wiuf, C. (2002). Review of GR Grant and WJ Ewens, `Statistical Methods in Bioinformatics: An Introduction' In Briefings in Bioinformatics (Vol. 3, pp. 318-319). Springer.

Displaying results 1251 to 1300 out of 1414

Revised 13.01.2026

Palle Villesen