Publications

Sort by: Date | Author | Title

The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium (2020). Pan-cancer analysis of whole genomes. Nature, 578(7793), 82-93. https://doi.org/10.1038/s41586-020-1969-6

Kumar, S., Warrell, J., Li, S., McGillivray, P. D., Meyerson, W., Salichos, L., Harmanci, A., Martinez-Fundichely, A., Chan, C. W. Y., Nielsen, M. M., Lochovsky, L., Zhang, Y., Li, X., Lou, S., Pedersen, J. S., Herrmann, C., Getz, G., Khurana, E. & Gerstein, M. B. (2020). Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences. Cell, 180(5), 915-927.e16. https://doi.org/10.1016/j.cell.2020.01.032

Reyna, M. A., Haan, D., Paczkowska, M., Verbeke, L. P. C., Vazquez, M., Kahraman, A., Pulido-Tamayo, S., Barenboim, J., Wadi, L., Dhingra, P., Shrestha, R., Getz, G., Lawrence, M. S., Pedersen, J. S., Rubin, M. A., Wheeler, D. A., Brunak, S., Izarzugaza, J. M. G., Khurana, E. ... PCAWG Consortium (2020). Pathway and network analysis of more than 2500 whole cancer genomes. Nature Communications, 11(1), Article 729. https://doi.org/10.1038/s41467-020-14367-0

Watkins, T. B. K., Lim, E. L., Petkovic, M., Elizalde, S., Birkbak, N. J., Wilson, G. A., Moore, D. A., Grönroos, E., Rowan, A., Dewhurst, S. M., Demeulemeester, J., Dentro, S. C., Horswell, S., Au, L., Haase, K., Escudero, M., Rosenthal, R., Bakir, M. A., Xu, H. ... Swanton, C. (2020). Pervasive chromosomal instability and karyotype order in tumour evolution. Nature, 587, 126-132. https://doi.org/10.1038/s41586-020-2698-6

Mikalsen, S.-O., Tausen, M. & Kongsstovu, S. I. (2020). Phylogeny of teleost connexins reveals highly inconsistent intra- and interspecies use of nomenclature and misassemblies in recent teleost chromosome assemblies. BMC Genomics, 21(1), Article 223. https://doi.org/10.1186/s12864-020-6620-2

Tataru, P. & Bataillon, T. (2020). polyDFE: Inferring the distribution of fitness effects and properties of beneficial mutations from polymorphism data. In J. Y. Dutheil (Ed.), Statistical population genomics (pp. 125-146). Humana Press. https://doi.org/10.1007/978-1-0716-0199-0_6

Castellano, D. & Munch, K. (2020). Population Genomics in the Great Apes. In J. Y. Dutheil (Ed.), Methods in Molecular Biology (pp. 453-463). Springer. https://doi.org/10.1007/978-1-0716-0199-0_19

Grelet, C., Froidmont, E., Foldager, L., Salavati, M., Hostens, M., Ferris, C. P., Ingvartsen, K. L., Crowe, M., Sørensen, M. T., Fernandez Pierna, J. A., Vanlierde, A., Gengler, N., GplusE Consortium & Dehareng, F. (2020). Potential of milk mid-infrared spectra to predict nitrogen use efficiency of individual dairy cows in early lactation. Journal of Dairy Science, 103(5), 4435-4445. https://doi.org/10.3168/jds.2019-17910

Foldager, L., Gaillard, C., Sørensen, M. T., Larsen, T., Matthews, E., O'Flaherty, R., Carter, F., Crowe, M., Grelet, C., Salavati, M., Hostens, M., GplusE Consortium, Ingvartsen, K. L. & Krogh, M. A. (2020). Predicting physiological imbalance in Holstein dairy cows by three different sets of milk biomarkers. Preventive Veterinary Medicine, 179, Article 105006. https://doi.org/10.1016/j.prevetmed.2020.105006

Biswas, D., Birkbak, N. J., Rosenthal, R., Hiley, C. T., Lim, E. L., Papp, K., Boeing, S., Krzystanek, M., Djureinovic, D., La Fleur, L., Greco, M., Döme, B., Fillinger, J., Brunnström, H., Wu, Y., Moore, D. A., Skrzypski, M., Abbosh, C., Litchfield, K. ... TRACERx Consortium (2020). Publisher Correction: A clonal expression biomarker associates with lung cancer mortality . Nature Medicine, 26(7), Article 1148. https://doi.org/10.1038/s41591-020-0899-z

Gokuldass, A., Draghi, A., Papp, K., Borch, T., Nielsen, M., Wulff Westergaard, M. C., Andersen, R., Schina, A., Bol, K. F., Chamberlain, C. A., Presti, M., Met, Ö., Harbst, K., Lauss, M., Soraggi, S., Csabai, I., Szallasi, Z., Jönsson, G., Svane, I. M. & Donia, M. (2020). Qualitative Analysis of Tumor-Infiltrating Lymphocytes across Human Tumor Types Reveals a Higher Proportion of Bystander CD8⁺ T Cells in Non-Melanoma Cancers Compared to Melanoma. Cancers, 12(11), 1-15. Article 3344. https://doi.org/10.3390/cancers12113344

Cavassim, M. I. A. (2020). Recombination and horizontal gene transfer through the lens of phylogenomics. [PhD dissertation, Aarhus University]. Aarhus Universitet.

Bailey, M. H., Meyerson, W. U., Dursi, L. J., Wang, L. B., Dong, G., Liang, W. W., Weerasinghe, A., Li, S., Kelso, S., Akbani, R., Anur, P., Bailey, M. H., Buchanan, A., Chiotti, K., Covington, K., Creason, A., Ding, L., MC3 Working Group, PCAWG novel somatic mutation calling methods working group & PCAWG Consortium (2020). Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nature Communications, 11(1), Article 4748. https://doi.org/10.1038/s41467-020-18151-y

Nathan, N. O., Mørch, L. S., Wu, C. S., Olsen, J., Hetland, M. L., Li, J. & Rom, A. L. (2020). Rheumatoid arthritis and risk of spontaneous abortion: a Danish nationwide cohort study. Rheumatology (Oxford, England), 59(8), 1984-1991. https://doi.org/10.1093/rheumatology/kez565

Ørbæk, M., Thorsteinsson, K., Moseholm Larsen, E., Katzenstein, T. L., Storgaard, M., Johansen, I. S., Pedersen, G., Bach, D., Helleberg, M., Weis, N. & Lebech, A. M. (2020). Risk factors during pregnancy and birth-related complications in HIV-positive versus HIV-negative women in Denmark, 2002–2014. HIV Medicine, 21(2), 84-95. https://doi.org/10.1111/hiv.12798

Hartfield, M. & Bataillon, T. (2020). Selective Sweeps Under Dominance and Inbreeding. G3 (Bethesda, Md.), 10(3), 1063-1075. https://doi.org/10.1534/g3.119.400919

Li, C. H., Prokopec, S. D., Sun, R. X., Yousif, F., Schmitz, N., PCAWG Tumour Subtypes and Clinical Translation, Boutros, P. C. & PCAWG Consortium (2020). Sex differences in oncogenic mutational processes. Nature Communications, 11, Article 4330. https://doi.org/10.1038/s41467-020-17359-2

Thomsen, A. H., Hougen, H. P., Villesen, P., Brink, O. & Leth, P. M. (2020). Sharp Force Homicide in Denmark 1992-2016. Journal of Forensic Sciences, 65(3), 833-839. https://doi.org/10.1111/1556-4029.14244

Cavassim, M. I. A., Moeskjær, S., Moslemi, C., Fields, B., Bachmann, A., Vilhjálmsson, B. J., Schierup, M. H., W Young, J. P. & Andersen, S. U. (2020). Symbiosis genes show a unique pattern of introgression and selection within a Rhizobium leguminosarum species complex. Microbial Genomics, 6(4), Article 000351. https://doi.org/10.1099/mgen.0.000351

Frandsen, P., Fontsere, C., Nielsen, S. V., Hanghøj, K., Castejon-Fernandez, N., Lizano, E., Hughes, D., Hernandez-Rodriguez, J., Korneliussen, T. S., Carlsen, F., Siegismund, H. R., Mailund, T., Marques-Bonet, T. & Hvilsom, C. (2020). Targeted conservation genetics of the endangered chimpanzee. Heredity, 125(1-2), 15-27. https://doi.org/10.1038/s41437-020-0313-0

Foldager, L., Trenel, P., Munksgaard, L. & Thomsen, P. T. (2020). Technical note: Random forests prediction of daily eating time of dairy cows from 3-dimensional accelerometer and radiofrequency identification. Journal of Dairy Science, 103(7), 6271–6275. https://doi.org/10.3168/jds.2019-17613

Schierup, M. H. (2020). The last pieces of a puzzling early meeting. Science (New York, N.Y.), 369(6511), 1565-1566. https://doi.org/10.1126/science.abe2766

Skov, L., Coll Macià, M., Sveinbjörnsson, G., Mafessoni, F., Lucotte, E. A., Einarsdóttir, M. S., Jonsson, H., Halldorsson, B., Gudbjartsson, D. F., Helgason, A., Schierup, M. H. & Stefansson, K. (2020). The nature of Neanderthal introgression revealed by 27,566 Icelandic genomes. Nature, 582(7810), 78-83. https://doi.org/10.1038/s41586-020-2225-9

Okholm, T. L. H., Sathe, S., Park, S. S., Kamstrup, A. B., Rasmussen, A. M., Shankar, A., Chua, Z. M., Fristrup, N., Nielsen, M. M., Vang, S., Dyrskjøt, L., Aigner, S., Damgaard, C. K., Yeo, G. W. & Pedersen, J. S. (2020). Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression. Genome Medicine, 12(112), Article 112. https://doi.org/10.1186/s13073-020-00812-8

Moutinho, A. F., Bataillon, T. & Dutheil, J. Y. (2020). Variation of the adaptive substitution rate between species and within genomes. Evolutionary Ecology, 34(3), 315-338. https://doi.org/10.1007/s10682-019-10026-z

Lavigne, F., Martin, G., Anciaux, Y., Papaix, J. & Roques, L. (2020). When sinks become sources: Adaptive colonization in asexuals. Evolution, 74(1), 29-42. https://doi.org/10.1111/evo.13848

Biswas, D., Birkbak, N. J., Rosenthal, R., Hiley, C. T., Lim, E. L., Papp, K., Boeing, S., Krzystanek, M., Djureinovic, D., La Fleur, L., Greco, M., Döme, B., Fillinger, J., Brunnström, H., Wu, Y., Moore, D. A., Skrzypski, M., Abbosh, C., Litchfield, K. ... TRACERx Consortium (2019). A clonal expression biomarker associates with lung cancer mortality. Nature Medicine, 25(10), 1540-1548. https://doi.org/10.1038/s41591-019-0595-z

Coronado-Zamora, M., Salvador-Martınez, I., Castellano, D., Barbadilla, A. & Salazar-Ciudad, I. (2019). Adaptation and conservation throughout the drosophila melanogaster life-cycle. Genome Biology and Evolution, 11(5), 1463-1482. https://doi.org/10.1093/gbe/evz086

Grelet, C., Froidmont, E., Hostens, M., Foldager, L., Salavati, M., Vanlierde, A., Sørensen, M. T., Ingvartsen, K. L., Crowe, M., Ferris, C. P., GplusE Consortium & Dehareng, F. (2019). A first approach to predict nitrogen efficiency of individual dairy cows through milk MIR spectra. Poster session presented at ICAR 2019, Prag, Czech Republic.

Foldager, L. & Ingvartsen, K. L. (2019). A follow-up on blood metabolic clusters in dairy cows. In Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science (Vol. 25, pp. 151). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-890-2

Speed, M., Balding, D. J. & Hobolth, A. (2019). A general framework for moment-based analysis of genetic data. Journal of Mathematical Biology, 78(6), 1727-1769. https://doi.org/10.1007/s00285-018-01325-0

Besenbacher, S., Mailund, T., Vilhjálmsson, B. J. & Schierup, M. H. (2019). Association mapping and disease: Evolutionary perspectives. In M. Anisimova (Ed.), Evolutionary genomics: Statistical and computational methods (2 ed., pp. 533-553). Springer. https://doi.org/10.1007/978-1-4939-9074-0_17

Satterstrom, F. K., Walters, R. K., Singh, T., Wigdor, E. M., Lescai, F., Demontis, D., Kosmicki, J. A., Grove, J., Stevens, C., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Palmer, D. S., Maller, J. B., iPSYCH-Broad Consortium, Nordentoft, M., Mors, O., Robinson, E. B., Hougaard, D. M., Werge, T. M. ... Daly, M. J. (2019). Autism spectrum disorder and attention deficit hyperactivity disorder have a similar burden of rare protein-truncating variants. Nature Neuroscience, 22(12), 1961-1965. https://doi.org/10.1038/s41593-019-0527-8

Foldager, L. & Jensen, M. B. (2019). Behaviour changes associated with diarrhoea and respiratory diseases in Danish pre-weaned dairy calves. In P. Linde (Ed.), Symposium i anvendt statistik 2019 (pp. 15-16).

Paternoster, V., Svanborg, M., Edhager, A. V., Rajkumar, A. P., Eickhardt, E. A., Pallesen, J., Grove, J., Qvist, P., Fryland, T., Wegener, G., Nyengaard, J. R., Mors, O., Palmfeldt, J., Børglum, A. D. & Christensen, J. H. (2019). Brain proteome changes in female Brd1+/- mice unmask dendritic spine pathology and show enrichment for schizophrenia risk. Neurobiology of Disease, 124, 479-488. https://doi.org/10.1016/j.nbd.2018.12.011

Griffiths, A. G., Moraga, R., Tausen, M., Gupta, V., Bilton, T. P., Campbell, M. A., Ashby, R., Nagy, I., Khan, A., Larking, A., Anderson, C., Franzmayr, B., Hancock, K., Scott, A., Ellison, N. W., Cox, M. P., Asp, T., Mailund, T., Schierup, M. H. & Andersen, S. U. (2019). Breaking Free: The Genomics of Allopolyploidy-Facilitated Niche Expansion in White Clover. The Plant Cell, 31(7), 1466-1487. https://doi.org/10.1105/tpc.18.00606

Pedersen, H. S., Liu, Y., Foldager, L., Callesen, H., Larsen, K. E. & Sørensen, M. T. (2019). Calibration of sperm concentration for in vitro fertilization in a mouse reprotoxicity model. Toxicology in Vitro, 55, 58-61. https://doi.org/10.1016/j.tiv.2018.11.009

Sun, C., Luecke, S., Bodda, C., Jønsson, K. L., Cai, Y., Zhang, B. C., Jensen, S. B., Nordentoft, I., Jensen, J. M., Jakobsen, M. R. & Paludan, S. R. (2019). Cellular Requirements for Sensing and Elimination of Incoming HSV-1 DNA and Capsids. Journal of Interferon & Cytokine Research, 39(4), 191-204. https://doi.org/10.1089/jir.2018.0141

Mota, R. R., Hammami, H., Vanderick, S., Naderi, S., Gengler, N. & GplusE Consortium (2019). Chromosome regions affecting MIR spectra indirect predictors of cheese--making properties in cattle. In Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science (Vol. 25, pp. 607). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-890-2

Liu, Y., Pedersen, H. S., Larsen, K. E., Kristensen, K., Foldager, L., Callesen, H. & Sørensen, M. T. (2019). Combined in vitro fertilization and culture (IVF/IVC) in mouse for reprotoxicity assessment of xenobiotic exposure. Reproductive Toxicology, 89(October), 115-123. https://doi.org/10.1016/j.reprotox.2019.07.006

Castellano, D., Macià, M. C., Tataru, P., Bataillon, T. & Munch, K. (2019). Comparison of the Full Distribution of Fitness Effects of New Amino Acid Mutations Across Great Apes. Genetics, 213(3), 953-966. https://doi.org/10.1534/genetics.119.302494

Besenbacher, S., Hvilsom, C., Marques-Bonet, T., Mailund, T. & Schierup, M. H. (2019). Direct estimation of mutations in great apes reconciles phylogenetic dating. Nature Ecology & Evolution, 3(2), 286-292. https://doi.org/10.1038/s41559-018-0778-x

Demontis, D., Walters, R. K., Martin, J., Mattheisen, M., Als, T. D., Agerbo, E., Baldursson, G., Belliveau, R., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Cerrato, F., Chambert, K., Churchhouse, C., Dumont, A., Eriksson, N., Gandal, M., Goldstein, J. I., Grasby, K. L., Grove, J. ... Børglum, A. D. (2019). Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder. Nature Genetics, 51(1), 63–75. https://doi.org/10.1038/s41588-018-0269-7

Verhoef, E., Demontis, D., Burgess, S., Shapland, C. Y., Dale, P. S., Okbay, A., Neale, B. M., Faraone, S. V., iPSYCH-Broad-PGC ADHD Consortium & Dalsgaard, S. (2019). Disentangling polygenic associations between attention-deficit/hyperactivity disorder, educational attainment, literacy and language. Translational Psychiatry, 9(1), Article 35. https://doi.org/10.1038/s41398-018-0324-2

Schild, S.-L. A., Foldager, L., Bonde, M., Andersen, H. M.-L. & Pedersen, L. J. (2019). Does hut climate matter for piglet survival in organic production? Animal, 13(4), 826-834. https://doi.org/10.1017/S175173111800201X

Bechsgaard, J., Schou, M. F., Vanthournout, B., Hendrickx, F., Knudsen, B., Settepani, V., Schierup, M. H. & Bilde, T. (2019). Evidence for Faster X Chromosome Evolution in Spiders. Molecular Biology and Evolution, 36(6), 1281-1293. https://doi.org/10.1093/molbev/msz074

Foo, J. C., Streit, F., Frank, J., Treutlein, J., Baune, B. T., Moebus, S., Joeckel, K.-H., Forstner, A. J., Noethen, M. M., Rietschel, M., Sartorius, A., Kranaster, L. & Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium (Jakob Grove, member of -) (2019). Evidence for increased genetic risk load for major depression in patients assigned to electroconvulsive therapy. American Journal of Medical Genetics. Part B: Neuropsychiatric Genetics, 180(1), 35-45. https://doi.org/10.1002/ajmg.b.32700

Anciaux, Y. E. (2019). Fitness Lanscape properties across environments: How to infer Fisher's Geometric Model properties from empirical fitness landscapes across environements . Poster session presented at Nordita meeting, Stockholm, Sweden.

Hübel, C., Gaspar, H. A., Coleman, J. R. I., Hanscombe, K. B., Purves, K., Prokopenko, I., Graff, M., Ngwa, J. S., Workalemahu, T., O’Reilly, P. F., Bulik, C. M., Breen, G., ADHD Working Group of the Psychiatric Genomics Consortium, Meta-Analyses of Glucose- and Insulin-related traits Consortium (MAGIC), Autism Working Group of the Psychiatric Genomics Consortium, Bipolar Disorder Working Group of the Psychiatric Genomics Consortium, Eating Disorders Working Group of the Psychiatric Genomics Consortium, Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, OCD & Tourette Syndrome Working Group of the Psychiatric Genomics Consortium ... International Headache Genetics Consortium (2019). Genetic correlations of psychiatric traits with body composition and glycemic traits are sex- and age-dependent. Nature Communications, 10(1), Article 5765. https://doi.org/10.1038/s41467-019-13544-0

Pettersson, E., Lichtenstein, P., Larsson, H., Song, J., Attention Deficit/Hyperactivity Disorder Working Group of the iPSYCH-Broad-PGC Consortium, Autism Spectrum Disorder Working Group of the iPSYCH-Broad-PGC Consortium, Bipolar Disorder Working Group of the PGC, Eating Disorder Working Group of the PGC, Major Depressive Disorder Working Group of the PGC, Obsessive Compulsive Disorders and Tourette Syndrome Working Group of the PGC, Schizophrenia CLOZUK, Substance Use Disorder Working Group of the PGC , Agrawal, A., Borglum, A. D., Bulik, C. M., Daly, M. J., Davis, L. K., Demontis, D., Edenberg, H. J., Grove, J., Gelernter, J., Neale, B. M., Pardiñas, A. F., Stahl, E., Walters, J. T. R., Walters, R. ... Polderman, T. J. C. (2019). Genetic influences on eight psychiatric disorders based on family data of 4 408 646 full and half-siblings, and genetic data of 333 748 cases and controls. Psychological Medicine, 49(7), 1166-1173. https://doi.org/10.1017/S0033291718002039

Displaying results 401 to 450 out of 1406

Revised 13.01.2026

Palle Villesen