Publications

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Schultz, T. R., Solomon, S. A., Mueller, U. G., Villesen, P., Boomsma, JJ., Adams, R. M. M. & Norden, B. (2002). Cryptic speciation in the fungus-growing ant Cyphomyrmex longiscapus Weber and Cyphomyrmex muelleri Schultz and Solomon, new species (Formicidae, Attini). Insectes Sociaux, 49, 331-343.

Schrempf, D. & Hobolth, A. (2017). An alternative derivation of the stationary distribution of the multivariate neutral Wright–Fisher model for low mutation rates with a view to mutation rate estimation from site frequency data. Theoretical Population Biology, 114, 88-94. https://doi.org/10.1016/j.tpb.2016.12.001

Schoustra, S. E., Bataillon, T., Gifford, D. R. & Kassen, R. (2009). The properties of adaptive walks in evolving populations of fungus. P L o S Biology, 7(11), e1000250. https://doi.org/10.1371/journal.pbio.1000250

Schouby Bock, M., Nørgaard Van Achter, O., Dines, D., Simonsen Speed, M., Correll, C. U., Mors, O., Østergaard, S. D. & Kølbæk, P. (2020). Clinical validation of the self-reported Glasgow Antipsychotic Side-effect Scale using the clinician-rated UKU side-effect scale as gold standard reference. Journal of Psychopharmacology, 34(8), 820-828. https://doi.org/10.1177/0269881120916122

Schoen, D. J., David, J. L. & Bataillon, T. (1998). Deleterious mutation accumulation and the regeneration of genetic resources. Proceedings of the National Academy of Sciences (PNAS), 95(1), 394-9.

Schiøtt, B. & Lie, M. A. (2008). DFT Study of Solvation Effects on the Tautomeric Equlibrium and Catalytic Ylide Generation of Thiamin Models. Journal of Computational Chemistry, 29, 1037-1047.

Schild, S.-L. A., Foldager, L., Bonde, M., Andersen, H. M.-L. & Pedersen, L. J. (2019). Does hut climate matter for piglet survival in organic production? Animal, 13(4), 826-834. https://doi.org/10.1017/S175173111800201X

Schild, S.-L. A., Foldager, L., Bonde, M. K., Andersen, H. M.-L. & Pedersen, L. J. (2019). Hut climate impacts piglet survival. In Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science (Vol. 25, pp. 338). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-890-2

Schild, S. L. A., Foldager, L., Rangstrup-Christensen, L. & Pedersen, L. J. (2020). Characteristics of Piglets Born by Two Highly Prolific Sow Hybrids. Frontiers in Veterinary Science, 7, Article 355. https://doi.org/10.3389/fvets.2020.00355

Schierup, M. H. & Forsberg, R. (2003). Recombination and phylogenetic analysis of HIV-1. Paper presented at Atti dei Convegni Lincei - Tavola rotonda nell'ambito della Conferenza annuale della Ricerca, Roma 28-29 settember, 2001.

Schierup, M. H., Mable, B. K., Awadalla, P. & Charlesworth, D. (2001). Identification and Characterization of a Polymorphic Receptor Kinase Gene Linked to the Self-Incompatibility Locus of Arabidopsis lyrata. Genetics, 158(387-399), 12259-12254.

Schierup, M. H., nullA.M., M. & Hein, J. (2001). Recombination, Balancing Selection and Phylogenies in MHC and Self-Incompatibility Genes. Genetics, 159, 1833-1844.

Schierup, M. H., Bechsgaard, J. S., Nielsen, L. H. & Christiansen, F. B. (2006). Selection at work in self-incompatible Arabidopsis lyrata: Mating patterns in a natural population. Genetics, 172, 477-484.

Schierup, M. H., Jensen, T. M. & Wiuf, C. (2005). The effect of a single recombination event. Poster session presented at Genomic Studies and the HapMap, Oxford, United Kingdom.

Schierup, M. H., Mordhorst, CH., Müller, CP. & Christensen, LS. (2005). Evidence of recombination among early-vaccination era measles virus strains. B M C Evolutionary Biology, 5(52).

Schierup, M. H. (2006). Consanguinity, inbreeding, and genetic drift in Italy by LL Cavalli-Sforza, A Moroni and G Zei. Iden, 96, 336-336.

Schierup, M. H. & Vekemans, X. (2008). Genomic consequences of selection on self-incompatibility genes. Current Opinion in Plant Biology, 116-122. https://doi.org/10.1016/j.pbi.2008.01.003

Schierup, M. H., Bechsgaard, J. S. & Christiansen, F. B. (2008). Selection at work in self-incompatible Arabidopsis lyrata. II. Spatial distribution of S haplotypes in Iceland. Genetics, 180(2), 1051-9. https://doi.org/10.1534/genetics.108.088799

Schierup, M. H., Mailund, T., Li, H., Wang, J., Tjønneland, A., Vogel, U., Bolund, L. & Nexø, B. A. (2009). Haplotype frequencies in a sub-region of chromosome 19q13.3, related to risk and prognosis of cancer, differ dramatically between ethnic groups. B M C Medical Genetics, 10, 20. https://doi.org/10.1186/1471-2350-10-20

Schierup, M. H. & Wiuf, C. H. (2010). The coalescent in bacterial populations. In D. A. Robinson, D. Falush & E. J. Feil (Eds.), Bacterial population genetics in infectious disease (pp. 3-19). Wiley-Blackwell.

Schierup, M. H. (2020). The last pieces of a puzzling early meeting. Science (New York, N.Y.), 369(6511), 1565-1566. https://doi.org/10.1126/science.abe2766

Schick, A., Bailey, S. & Kassen, R. (2015). Evolution of fitness trade-offs in locally adapted populations of Pseudomonas fluorescens. American Naturalist, 186(S1), S48-S59. https://doi.org/10.1086/682932

Schepeler, T., Reinert, T., Ostenfeld, M. S., Christensen, L. L., Silahtaroglu, A. N., Dyrskjøt, L., Wiuf, C., Sørensen, F. J., Kruhøffer, M., Laurberg, S., Kauppinen, S., Ørntoft, T. F. & Andersen, C. L. (2008). Diagnostic and prognostic microRNAs in stage II colon cancer. Cancer Research, 68(15), 6416-24. https://doi.org/10.1158/0008-5472.CAN-07-6110

Schendel, D., Munk Laursen, T., Albiñana, C., Vilhjalmsson, B., Ladd-Acosta, C., Fallin, M. D., Benke, K., Lee, B., Grove, J., Kalkbrenner, A., Ejlskov, L., Hougaard, D., Bybjerg-Grauholm, J., Baekvad-Hansen, M., Børglum, A. D., Werge, T., Nordentoft, M., Mortensen, P. B. & Agerbo, E. (2022). Evaluating the interrelations between the autism polygenic score and psychiatric family history in risk for autism. Autism Research, 15(1), 171-182. https://doi.org/10.1002/aur.2629

Schauser, L., Fredslund, J., Madsen, L. H., Sandal, N. N. & Stougaard, J. (2005). A computational pipeline towards the development of comparative anchor tagged sequence (CATS) markers. In M. O. Humphrey (Ed.), Proceedings of the International Grassland Congress (IGC) (pp. 73-81). Wageningen Academic Publishers.

Schauser, L., Subrahmanyam, S., Madsen, L. H., Sandal, N. N. & Stougaard, J. (2005). An in silico strategy towards the development of legume genome anchor markers using comparative sequence analysis. In In Márquez, A.J. ed. Lotus japonicus handbook (pp. 233-242). Springer.

Schauser, L., Wieloch, W. & Stougaard, J. (2005). Evolution of NIN-like proteins in Arabidopsis, rice and Lotus japonicus. Journal of Molecular Evolution, 60(2), 229-237. https://doi.org/10.1007/s00239-004-0144-2

Scally, A., Dutheil, J. Y., Hillier, L. W., Jordan, G. E., Goodhead, I., Herrero, J., Hobolth, A., Lappalainen, T., Mailund, T., Marques-Bonet, T., McCarthy, S., Montgomery, S. H., Schwalie, P. C., Tang, Y. A., Ward, M. C., Xue, Y., Yngvadottir, B., Alkan, C., Andersen, L. N. ... Durbin, R. (2012). Insights into hominid evolution from the gorilla genome sequence. Nature, 483(7388), 169-75. https://doi.org/10.1038/nature10842

Satterstrom, F. K., Walters, R. K., Singh, T., Wigdor, E. M., Lescai, F., Demontis, D., Kosmicki, J. A., Grove, J., Stevens, C., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Palmer, D. S., Maller, J. B., iPSYCH-Broad Consortium, Nordentoft, M., Mors, O., Robinson, E. B., Hougaard, D. M., Werge, T. M. ... Daly, M. J. (2019). Autism spectrum disorder and attention deficit hyperactivity disorder have a similar burden of rare protein-truncating variants. Nature Neuroscience, 22(12), 1961-1965. https://doi.org/10.1038/s41593-019-0527-8

Satterstrom, F. K., Kosmicki, J. A., Wang, J., Breen, M. S., De Rubeis, S., An, J. Y., Peng, M., Collins, R., Grove, J., Klei, L., Stevens, C., Reichert, J., Mulhern, M. S., Artomov, M., Gerges, S., Sheppard, B., Xu, X., Bhaduri, A., Norman, U. ... Børglum, A. D. (2020). Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism. Cell, 180(3), 568-584.e23. https://doi.org/10.1016/j.cell.2019.12.036

Sanggaard, K. W., Bechsgaard, J. S., Fang, X., Duan, J., Dyrlund, T. F., Gupta, V., Jiang, X., Cheng, L., Fan, D., Feng, Y., Han, L., Huang, Z., Wu, Z., Liao, L., Settepani, V., Thøgersen, I. B., Vanthournout, B., Wang, T., Zhu, Y. ... Wang, J. (2014). Spider genomes provide insight into composition and evolution of venom and silk. Nature Communications, 5, Article 3765. https://doi.org/10.1038/ncomms4765

Sand, A., Brask, A. T., Pedersen, C. N. S., Mailund, T. & Brask, A. T. (2010). HMMlib: A C++ Library for General Hidden Markov Models Exploiting Modern CPUs. In 2010 Ninth International Workshop on Parallel and Distributed Methods in Verification and Second International Workshop on High Performance Computational Systems Biology (pp. 126 - 134 ). IEEE.

Sand, A., Pedersen, C. N. S., Mailund, T., Brodal, G. S. & Fagerberg, R. (2013). A practical O(n log² n) time algorithm for computing the triplet distance on binary trees. B M C Bioinformatics, 14(Suppl 2), S18. https://doi.org/10.1186/1471-2105-14-S2-S18

Sand, A., Holt, M. K., Johansen, J., Fagerberg, R., Pedersen, C. N. S., Brodal, G. S. & Mailund, T. (2013). Algorithms for Computing the Triplet and Quartet Distances for Binary and General Trees. Biology, 2(4), 1189-1209. https://doi.org/10.3390/biology2041189

Sand, A. & Steel, M. (2013). The standard lateral gene transfer model is statistically consistent for pectinate four-taxon trees. Journal of Theoretical Biology, 335, 295-298. https://doi.org/10.1016/j.jtbi.2013.07.002

Sand, A., Kristiansen, M., Pedersen, C. N. S. & Mailund, T. (2013). zipHMMlib: a highly optimised HMM library exploiting repetitions in the input to speed up the forward algorithm. BMC Bioinformatics , 14(339), 339-348. https://doi.org/10.1186/1471-2105-14-339

Sand, A., Holt, M. K., Johansen, J., Brodal, G. S., Mailund, T. & Pedersen, C. N. S. (2014). tqDist: A Library for Computing the Quartet and Triplet Distances Between Binary and General Trees. Bioinformatics, 30(4), 2079-2080. https://doi.org/10.1093/bioinformatics/btu157

Sand, A. (2014). Engineering of Algorithms for Hidden Markov models and Tree Distances. Department of Computer Science, Aarhus University.

Salvador-Martínez, I., Coronado-Zamora, M., Castellano, D., Barbadilla, A. & Salazar-Ciudad, I. (2018). Mapping selection within Drosophila melanogaster embryo's anatomy. Molecular Biology and Evolution, 35(1), 66-79. https://doi.org/10.1093/molbev/msx266

Sall, K., Gessler, F., Foldager, L. & Simonic, M. (2021). Tannins to control Clostridium perfringens in vitro. Poster session presented at Annual Congress of The Danish Microbiological Society, Frederiksberg, Denmark.

Salek, P., Høst, S., Thøgersen, L., Jørgensen, P., Manninen, P., Olsen, J., Jansik, B., Reine, S., Pawlowski, F., Tellgren, E., Helgaker, T. & Coriani, S. (2007). Linear-scaling implementation of molecular electronic self-consistent field theory. Journal of Chemical Physics, 126, 114110-1 - 114110-16.

Salavati, M. & GplusE Consortium (2017). Exploratory classification of multiparous dairy cows based on fertility related phenotypes. In Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science (pp. 402-402). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-859-9

Salavati, M. & GplusE Consortium (2017). Investigating metabolic phenotypes in multiparous dairy cows by component analysis and clustering. In Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science (pp. 404-404). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-859-9

Sahana, G., Lund, M. S., Mailund, T. & Guldbrandtsen, B. (2010). A new powerful method for genome-wide association mapping using local phylogenies in a mixed model. Paper presented at 9th World Congress on Genetics Applied to Livestock Production, Leipzig, Germany.

Sahana, G., Mailund, T., Lund, M. S. & Guldbrandtsen, B. (2011). Local Genealogies in a Linear Mixed Model for Genome-wide Association Mapping in Complex Pedigreed Populations. P L o S One, 6(11).

Saetre, P., Grove, J., Børglum, A., Mors, O., Werge, T. M., Andreassen, O. A., Vares, M., Agartz, I., Terenius, L. & Jönsson, E. G. (2012). Methylenetetrahydrofolate reductase (MTHFR) C677T polymorphism and age at onset of schizophrenia: no consistent evidence for an association in the Nordic population. American Journal of Medical Genetics. Part B: Neuropsychiatric Genetics, 159B(8).

Sadik, A., Dardani, C., Pagoni, P., Havdahl, A., Stergiakouli, E., Khandaker, G. M., Sullivan, S. A., Zammit, S., Jones, H. J., Davey Smith, G., Dalman, C., Karlsson, H., Gardner, R. M., Rai, D. & The iPSYCH Autism Spectrum Disorder Working Group (2022). Parental inflammatory bowel disease and autism in children. Nature Medicine, 28(7), 1406-1411. https://doi.org/10.1038/s41591-022-01845-9

Rydder, P. M., Andreasen, L., Thomsen, S. H., Jensen, U. B., Becher, N., Dunø, M. & Vogel, I. (2025). Mosaic STS gene deletions in chorionic villus samples are often confined to the placenta, and they differ in size from STS gene deletions in patients with X-linked Ichthyosis. Placenta, 165, 16-22. https://doi.org/10.1016/j.placenta.2025.03.016

Rousselle, M., Mollion, M., Nabholz, B., Bataillon, T. & Galtier, N. (2018). Overestimation of the adaptive substitution rate in fluctuating populations. Biology Letters, 14(5), Article 20180055. https://doi.org/10.1098/rsbl.2018.0055

Rousing, T., Rothmann Holm, J., Krogh, M. A., Østergaard, S. & GplusE Consortium (2020). Expert-based development of a generic HACCP-based risk management system to prevent critical negative energy balance in dairy herds. Preventive Veterinary Medicine, 175, Article 104849. https://doi.org/10.1016/j.prevetmed.2019.104849

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Revised 21.08.2024

Palle Villesen