Publications

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Zieger, K., Andersen, L. D., Wiuf, C., Jensen, J. L., Andersen, C. L., Jensen, K. M-E. & Ørntoft, T. F. (2005). Role of activating fibroblast growth factor receptor 3 mutations in the development of bladder tumors. Clinical Cancer Research, 11(21), 7709-7719.

Zieger, K., Wiuf, C. H., Jensen, K. M-E., Ørntoft, T. F. & Andersen, L. D. (2009). Chromosomal imbalance in the progression of high-risk non-muscle invasive bladder cancer. B M C Cancer, 9, 149.

Zieger, K., Wiuf, C., Jensen, K. M-E., Ørntoft, T. F. & Andersen, L. D. (2009). Chromosomal imbalance in the progression of high-risk non-muscle invasive bladder cancer. B M C Cancer, 9, 149. https://doi.org/10.1186/1471-2407-9-149

Zhou, Y., Zhan, X., Jin, J., Zhou, L., Bergman, J., Li, X., Rousselle, M. M. C., Belles, M. R., Zhao, L., Fang, M., Chen, J., Fang, Q., Kuderna, L., Marques-Bonet, T., Kitayama, H., Hayakawa, T., Yao, Y. G., Yang, H., Cooper, D. N. ... Zhang, G. (2023). Eighty million years of rapid evolution of the primate Y chromosome. Nature Ecology and Evolution, 7(7), 1114-1130. https://doi.org/10.1038/s41559-022-01974-x

Zheng, J., Richardson, T. G., Millard, L. A. C., Hemani, G., Elsworth, B. L., Raistrick, C. A., Vilhjalmsson, B., Neale, B. M., Haycock, P. C., Smith, G. D. & Gaunt, T. R. (2018). PhenoSpD: an integrated toolkit for phenotypic correlation estimation and multiple testing correction using GWAS summary statistics. GigaScience, 7(8), 1-10. https://doi.org/10.1093/gigascience/giy090

Zhang, Q., Cai, Z., Lhomme, M., Sahana, G., Lesnik, P., Guerin, M., Fredholm, M. & Karlskov-Mortensen, P. (2020). Inclusion of endophenotypes in a standard GWAS facilitate a detailed mechanistic understanding of genetic elements that control blood lipid levels. Scientific Reports, 10(1), Article 18434. https://doi.org/10.1038/s41598-020-75612-6

Zhang, Q., Privé, F., Vilhjálmsson, B. & Speed, D. (2021). Improved genetic prediction of complex traits from individual-level data or summary statistics. Nature Communications, 12(1), Article 4192. https://doi.org/10.1038/s41467-021-24485-y

Zhang, B. L., Chen, W., Wang, Z., Pang, W., Luo, M. T., Wang, S., Shao, Y., He, W. Q., Deng, Y., Zhou, L., Chen, J., Yang, M. M., Wu, Y., Wang, L., Fernández-Bellon, H., Molloy, S., Meunier, H., Wanert, F., Kuderna, L. ... Wu, D. D. (2023). Comparative genomics reveals the hybrid origin of a macaque group. Science Advances, 9(22), Article eadd3580. https://doi.org/10.1126/sciadv.add3580

Zhang, C., Reid, K., Sands, A. F., Fraimout, A., Schierup, M. H. & Merilä, J. (2023). De Novo Mutation Rates in Sticklebacks. Molecular Biology and Evolution, 40(9), Article msad192. https://doi.org/10.1093/molbev/msad192

Zacharov, T. F., Qin, P., Buttenschøn, H. N., Kristensen, I. B., Christoffersen, S., Hansen, N. F., Foldager, L., Mortensen, P. B., Børglum, A. & Mors, O. (2010). An association study of suicide and candidate genes in the serotonergic system. Abstract from Psykiatriens 5. Forskningsdag, Risskov, Denmark.

Yengo, L., Vedantam, S., Marouli, E., Sidorenko, J., Bartell, E., Sakaue, S., Graff, M., Eliasen, A. U., Jiang, Y., Raghavan, S., Miao, J., Arias, J. D., Graham, S. E., Mukamel, R. E., Spracklen, C. N., Yin, X., Chen, S-H., Ferreira, T., Highland, H. H. ... Understanding Society Scientific Group (2022). A saturated map of common genetic variants associated with human height. Nature, 610(7933), 704–712. https://doi.org/10.1038/s41586-022-05275-y

Ye, J., Fang, L., Zheng, H., Zhang, Y., Chen, J., Zhang, Z., Wang, J., Li, S., Li, R., Bolund, L. & Wang, J. (2006). WEGO: a web tool for plotting GO annotations. Nucleic Acids Research, 34(Web Server issue), W293-7. https://doi.org/10.1093/nar/gkl031

Yang, C., Zhou, Y., Marcus, S., Formenti, G., Bergeron, L. A., Song, Z., Bi, X., Bergman, J., Rousselle, M. M. C., Zhou, C., Zhou, L., Deng, Y., Fang, M., Xie, D., Zhu, Y., Tan, S., Mountcastle, J., Haase, B., Balacco, J. ... Zhang, G. (2021). Evolutionary and biomedical insights from a marmoset diploid genome assembly. Nature, 594(7862), 227-233. https://doi.org/10.1038/s41586-021-03535-x

Wurtz, K. E., Thodberg, K., Berenjian, A., Foldager, L., Tahamtani, F. M. & Riber, A. B. (2022). Commercial layer hybrids kept under organic conditions: a comparison of range use, welfare, and egg production in two layer strains. Poultry Science, 101(9), Article 102005. https://doi.org/10.1016/j.psj.2022.102005

Wurtz, K. E., Tahamtani, F. M., Foldager, L., Thodberg, K. & Riber, A. B. (2022). Association of range use, individual behavior, and welfare indicators of two laying hen hybrids housed under organic conditions. In M. Kjosevski, S. Waiblinger & V. Ilieski (Eds.), Proceedings of the 55th Congress of the ISAE: Animal Behaviour and Beyond (pp. 56-56). https://www.applied-ethology.org/res/ISAE_2022_PROCEEDINGS_e-version.pdf

Wurtz, K. E., Tahamtani, F. M., Foldager, L., Thodberg, K. & Riber, A. B. (2023). Associations of range use with individual behaviour, clinical welfare indicators, fear response and gastrointestinal characteristics of two laying hen hybrids. Applied Animal Behaviour Science, 265, Article 105978. https://doi.org/10.1016/j.applanim.2023.105978

Wright, M., Smed, M. K., Nelson, J. L., Olsen, J., Hetland, M. L., Zoffmann, V. & Jawaheer, D. (2021). Is gene expression among women with rheumatoid arthritis dysregulated during a postpartum flare? Arthritis Research and Therapy, 23, Article 30. https://doi.org/10.1186/s13075-021-02418-w

Wiuf, C. (2004). Inference on recombination and block structure using unphased data. Genetics, 166, 537-545.

Wiuf, C., Zhao, K., Innan, H. & Nordborg, M. (2004). The probability and chromosomal extent of trans-specific polymorphisms. Genetics, 168, 2363-2372.

Wiuf, C. & Stumpf, MPH. (2006). Binomial subsampling. Proceedings of the Royal Society A: Mathematical, Physical & Engineering, 462, 1181-1195. https://doi.org/10.1098/rspa.2005.1622

Wiuf, C. (2006). Consistency of estimators of population scaled parameters using composite likelihood. J Math Biol, 53, 821-841. https://doi.org/10.1007/s00285-006-0031-0

Wiuf, C., Laidlaw, Z. & Stumpf, MPH. (2003). Some notes on the combinatorial properties of haplotype tagging. Math. Biosci., 185, 205-216.

Wiuf, C., Brameier, M., Hagberg, O. & Stumpf, MPH. (2006). A likelihood approach to analysis of network data. Proceedings of the National Academy of Sciences, 103(20), 7566-7570.

Wiuf, C. & Posada, D. (2003). A coalescent model of hotspot recombination. Genetics 164: 407-417. Genetics, 164, 407-417.

Wiuf, C. (2003). Inferring population history from geneaological trees. J Math Biol, 46, 241-264. https://doi.org/10.1007/s00285-002-0180-8

Wiuf, C. (2002). On the minimum number of topologies explaining a sample of DNA sequences. Theor Pop Biol, 62, 357-363.

Wiuf, C. (2001). Recombination in human mitochondrial DNA? Genetics, 159, 749-756.

Wiuf, C., Christensen, T. & Hein, J. (2001). A simulation study of the reliability of recombination detection methods. Mol. Biol. Evol., 18, 1929-1939.

Wiuf, C. (2001). Rare Alleles and Selection. Theoretical Population Biology, 59(4), 287-296. https://doi.org/10.1006/tpbi.2001.1523

Wiuf, C. (2001). Do ΔF508 heterozygotes have a selective advantage? Genet Res, 78, 41-47. https://doi.org/10.1017/S0016672301005195

Wiuf, C. (2000). On the genealogy of a sample of neutral rare alleles. Theor Pop Biol, 58(1), 61-75. https://doi.org/10.1006/tpbi.2000.1469

Wiuf, C. (2000). A coalescence approach to gene conversion. Theor Pop Biol, 57(4), 357-367. https://doi.org/10.1006/tpbi.2000.1462

Wiuf, C. & Hein, J. (2000). The coalescent with gene conversion. Genetics, 155, 451-462.

Wiuf, C. & Donelly, P. (1999). Conditional Genealogies and the Age of a Neutral Mutant. Theoretical Population Biology, 56(2), 183-201. https://doi.org/10.1006/tpbi.1998.1411

Wiuf, C. & Hein, J. (1999). Recombination as a Point Process along Sequences. Theoretical Population Biology, 55(3), 248-259. https://doi.org/10.1006/tpbi.1998.1403

Wiuf, C. & Hein, J. (1999). The ancestry of a sample of sequences subject to recombination. Genetics, 151, 1217-1228.

Wiuf, C. & Hein, J. (1997). On the number of ancestors to a DNA sequence. Genetics, 147, 1459-1468.

Wiuf, C. (2003). The age of a rare mutation. In PJ. Green, NL. Hjort & S. Richardson (Eds.), Highly Structured Stochastic Systems (Vol. 27, pp. 417-422). Oxford University Press.

Wiuf, C. & Hein, J. (1999). Discussion of a paper by JT Chang, `Recent common ancestors of all present-day individuals' Adv. Appl. Prob., 31, 1029-1030.

Wiuf, C. (1994). A generalization of a von Mises-Fisher conditional distribution result. Research Reports no 296. Department of Theoretical Statistics, University of Aarhus.

Wiuf, C. (1994). Dual spaces and β-orthogeodesic models. Research Reports no 286: . Department of Theoretical Statistics, University of Aarhus.

Wiuf, C. & Ratmann, O. (2007). Statistical analysis of biological network data. In P. Linde (Ed.), Symposium i Anvendt Statistik 2007 (pp. 147-156)

Wiuf, C., Ratmann, O. & Knudsen, M. (2008). Analysis of biological network data using likelihood-free inference techniques. In M. Ahdesmäki, K. Strimmer, N. Radde, J. Rahnenführer, K. Klemm, H. Lähdesmäki & O. Yli-Harja (Eds.), Ikke angivet (pp. 185-188). <Forlag uden navn>.

Wiuf, C. H. & Andersen, C. L. (Eds.) (2009). Statistics and Informatics in Molecular Cancer Research. (1 ed.) Oxford University Press.

Wiuf, C. H. & Andersen, C. L. (Eds.) (2009). Statistics and Informatics in Molecular Cancer Research. Oxford University Press.

Wiuf, C. H., Lamy, P. & Andersen, C. L. (2009). Methods for derivation of LOH and allelic copy numbers using SNP arrays. In C. H. Wiuf & C. L. Andersen (Eds.), Statistics and Informatics in Molecular Cancer Research (pp. 62-77). Oxford University Press.

Wiuf, C. H. & Stumpf, M. (2010). Incomplete and noisy network data as a percolation process. Journal of the Royal Society. Interface, 7(51), 1411-1419.

Wiuf, C., Pallesen, J., Foldager, L. & Grove, J. (2016). LandScape: a simple method to aggregate p--Values and other stochastic variables without a priori grouping. Statistical Applications in Genetics and Molecular Biology, 15(4), 349-361. https://doi.org/10.1515/sagmb-2015-0085

Winters, J., Kobek-Kjeldager, C., Foldager, L. & Pedersen, L. J. (2021). Preliminary results on the effect of keeping pigs in home environment post weaning. In E. Strandberg, L. Pinotti, S. Messori, D. Kenny, M. Lee, J. F. Hocquette, V. A. P. Cadavez, S. Millet, R. Evans, T. Veldkamp, M. Pastell & G. Pollott (Eds.), Book of Abstracts of the 72nd Annual Meeting of the European Federation of Animal Science (pp. 356-356). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-918-3

Winters, J. F. M., Schönherz, A. A., Canibe, N., Foldager, L. & Pedersen, L. J. (2022). Weaning intact litters in farrowing pens for loose housed sows: diarrhoea and microbiota composition . In Book of Abstracts of the 73rd Annual Meeting of the European Federation of Animal Science (pp. 348-348). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-937-4

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Revised 17.04.2023

Palle Villesen