Publications

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Hagberg, O. & Wiuf, C. (2006). Convergence properties of the degree distribution of some network models. Bull Math Biol, 68, 1275-1291. https://doi.org/10.1007/s11538-006-9085-9

Hansen, AJ., Mitchell, D., Wiuf, C., Paniker, L., Brand, TB., Binladen, J., Gilichinsky, DA., Rønn, R. & Willerslev, E. (2006). Crosslinks rather than Strand Breaks Determine Access to Ancient DNA Sequences from Frozen Sediments. Genetics, 173, 1175-1179. https://doi.org/10.1534/genetics.106.057349

Hougaard, B. K., Madsen, L. H., Fredslund, J., Schauser, L., Nielsen, A. M., Sandal, N. N., Rohde, T., Jacobsen, R. H., Bertioli, D. J., Tohme, J., Blair, M. & Stougaard, J. (2006). Development of Legume Anchor Markers: a bioinformatic driven tool for genetic mapping and comparative genomics. Poster session presented at 7th European Nitrogen Fixation Conference, Aarhus, Denmark.

Hougaard, B. K., Madsen, L. H., Fredslund, J., Schauser, L., Nielsen, A. M., Sandal, N. N., Rohde, T., Jacobsen, R. H., Bertioli, D. J., Tohme, J., Blair, M. & Stougaard, J. (2006). Development of Legume Anchor Markers: a bioinformatic driven tool for genetic mapping and comparative genomics. Poster session presented at Crop Genomics, Trait Analysis and Breeding, Hinxton, United Kingdom.

Hougaard, B. K., Madsen, L. H., Fredslund, J., Schauser, L., Nielsen, A. M., Sandal, N. N., Bertioli, D., Blair, M., Tohme, J. & Stougaard, J. (2006). Development of Legume Anchor Markers: a tool for genetic mapping and comparative genomics driven by bioinformatics. Poster session presented at Plant Biotech Denmark Annual meeting 2006, København, Denmark.

Herbsleb, M., Andersen, T. T., Wiuf, C. & Ørntoft, T. F. (2006). Identification of New Transcriptional Correlations in Cancer Using Array Databases and Functional In Vitro Studies , presented at PhD Annual Day, Graduate School of Health, University of Aarhus.. Poster session presented at Identification of New Transcriptional Correlations in Cancer Using Array Databases and Functional In Vitro Studies , presented at PhD Annual Day, Graduate School of Health, University of Aarhus..

Villesen, P. & Fredsted, T. (2006). Fast and non-invasive PCR sexing of primates: apes, Old World monkeys, New World monkeys and Strepsirrhines. BMC Ecology, 6(8).

Christiansen, C., Mailund, T., Pedersen, C. N. S., Randers, M. & Stissing, M. (2006). Fast Calculation of the Quartet Distance Between Trees of Arbitrary Degrees. Algorithms for Molecular Biology, 1(16).

Fredslund, J., Madsen, L. H., Hougaard, B. K., Sandal, N. N., Stougaard, J., Bertioli, D. & Schauser, L. (2006). GeMprospector - online design of cross-species genetic marker candidates in legumes and grasses. Nucleic Acids Research, 34, W670-W675.

Mailund, T., Schierup, M. H., Pedersen, C. N. S., Madsen, J. N., Hein, J. & Schauser, L. (2006). GeneRecon—A coalescent based tool for fine-scale association mapping. Bioinformatics, 22(18), 2317–2318.

Mailund, T. (2006). GeneRecon Users' Manual — A coalescent based tool for fine-scale association mapping.

Lamy, P., Andersen, C. L., Wikman, F. & Wiuf, C. (2006). Genotyping and annotation of Affymetrix SNP arrays. Nucleic Acids Research, 34(14). https://doi.org/10.1093/nar/gkl475

Mailund, T. (2006). Getting Started with Blossoc. http://www.daimi.au.dk/~mailund/Blossoc/download/getting-started-1.1.pdf

Mailund, T. & Schauser, L. (2006). Getting Started with GeneRecon — An Introduction to the Association Mapping Tool GeneRecon.

Mailund, T. (2006). Getting Started with HapCluster: An introduction to the HapCluster association mapping tool.

Jørgensen, F. G., Schierup, M. H. & Clark, A. G. (2006). Heterogeneity in Regional GC Content and Differential Usage of Codons and Amino Acids in GC-Poor and GC-Rich Regions of the Genome of Apis mellifera. Molecular Biology and Evolution. https://doi.org/10.1093/molbev/msl190

Fukai, E., Madsen, L. H., Radutoiu, E. S., Dobrowolska, A., Yost, C. K., Sandal, N. N., Schauser, L. & Stougaard, J. (2006). Identification and characterisation of LORE1 and LORE2, active retrotransposons in model legume Lotus japonicus. Poster session presented at Plant Biotech Denmark Annual meeting 2006, København, Denmark.

Fredsted, T., Wincentz, T. & Villesen, P. (2006). Introgression of mountain hare (Lepus timidus) mitochondrial DNA into wild brown hares (Lepus europaeus) in Denmark. BMC Ecology, 6(17).

Poulsen, N. A., Nielsen, E. E., Schierup, M. H., Loeschcke, V. & Grønkjær, P. (2006). Long-term stability and effective population size in North Sea and Baltic Sea cod (Gadus morhua). Molecular Ecology, 15, 321-331.

Glemin, S., Ronfort, J., Vimond, L., Bataillon, T. & Mignot, A. (2006). Marker-based investigation of inbreeding depression in the endangered species Brassica insularis. Heredity, 97(4), 304-311.

Ronfort, J., Bataillon, T., Santoni, S., Delalande, M., David, J. & Prosperi, J.-M. (2006). Microsatellite diversity and broad scale geographic structure in a model legume: building a set of nested core collection for studying naturally occurring variation in Medicago truncatula. BMC Plant Biology, 6(28). https://doi.org/10.1186/1471-2229-6-28

De Mita, S., Santoni, S., Hochu, I., Ronfort, J. & Bataillon, T. (2006). Molecular evolution and positive selection of the symbiotic gene NORK in Medicago truncatula. Journal of Molecular Evolution, 62(2), 234-244.

Fredsted, T. & Villesen, P. (2006). Operation "Red Aben". Jyllands-Posten, 8-8.

Fredsted, T. & Villesen, P. (2006). Operation "Red aben". Jyllands-Posten.

Fredslund, J. (2006). PHY∙FI: fast and easy online creation and manipulation of phylogeny color figures. BMC Bioinformatics, 7(315). https://doi.org/10.1186/1471-2105-7-315

Christiansen, FB. (2006). Population Genetics with a view towards Bioinformatics. Lecture Notes in Population Genetics. Eget.

Christensen, O. F. (2006). Pseudo-likelihood for non-reversible nucleotide substitution models with neighbour dependent rates. Statistical Applications in Genetics and Molecular Biology, 5(18).

Mailund , Brodal, G. S., Fagerberg, R., Pedersen, C. N. S. & Phillips, D. (2006). Recrafting the Neighbor-Joining Method. BMC Bioinformatics, 7(29).

Christensen, O. F., Roberts, G. & Sköld, M. (2006). Robust Markov chain Monte Carlo methods for spatial generalised linear mixed models. Journal of Computational and Graphical Statistics, 15, 1-17.

Schierup, M. H., Bechsgaard, J. S., Nielsen, L. H. & Christiansen, F. B. (2006). Selection at work in self-incompatible Arabidopsis lyrata: Mating patterns in a natural population. Genetics, 172, 477-484.

Christensen, L. L., Wikman, F., Wiuf, C., Madsen, B. E., Overvad, K., Tjønnland, A., Koed, K. & Ørntoft, T. F. (2006). The Association of Missense and Silent Mutations with the Development of sporadic and Familial Breast Cancer in the Danish Population. Poster session presented at 19th Meeting of the European Association for Cancer Research, Budapest, Hungary.

Bataillon, T., Mailund, T., Thorlacius, S., Steingrimsson, E., Rafnar, T., Halldorsson, M., Calian, V. & Schierup, M. H. (2006). The effective size of the Icelandic population and the prospects for LD mapping: inference from unphased microsatellite markers. European Journal of Human Genetics, 14, 1044–1053. https://doi.org/10.1038/sj.ejhg.5201669

de Silva, E., Thorne, T., Ingram, P., Agrafioti, I., Swire, J., Wiuf, C. & Stumpf, MPH. (2006). The effects of incomplete protein interaction data on structural and evolutionary inferences. BMC Biology, 4(39). https://doi.org/10.1186/1741-7007-4-39

Bach, L. A., Helvik, T. & Christiansen, F. B. (2006). The evolution of n-player cooperation—threshold games and ESS bifurcations. Journal of Theoretical Biology, 238, 426-434.

Andersen, E. S., Rosenblad, M. A., Larsen, N., Westergaard, J. C., Burks, J., Wower, I. K., Wower, J., Gorodkin, J., Samuelsson, T. & Zwieb, C. (2006). The tmRDB and SRPDB resources. Nucleic Acids Res. , 34(Database issue), D163-8.

Bechsgaard, J. S., Castric, V., Charlesworth, D., Vekemans, X. & Schierup, M. H. (2006). The transition to self-compatibility in Arabidopsis thaliana and evolution within S-haplotypes over 10 Myr. Molecular Biology and Evolution, 23(9), 1741-1750.

Ye, J., Fang, L., Zheng, H., Zhang, Y., Chen, J., Zhang, Z., Wang, J., Li, S., Li, R., Bolund, L. & Wang, J. (2006). WEGO: a web tool for plotting GO annotations. Nucleic Acids Research, 34(Web Server issue), W293-7. https://doi.org/10.1093/nar/gkl031

Mailund, T., Besenbacher, S. & Schierup, M. H. (2006). Whole genome association mapping by incompatibilities and local perfect phylogenies. BMC Bioinformatics, 7(454). https://doi.org/10.1186/1471-2105-7-454

Schauser, L., Fredslund, J., Madsen, L. H., Sandal, N. N. & Stougaard, J. (2005). A computational pipeline towards the development of comparative anchor tagged sequence (CATS) markers. In M. O. Humphrey (Ed.), Proceedings of the International Grassland Congress (IGC) (pp. 73-81). Wageningen Academic Publishers.

Schauser, L., Subrahmanyam, S., Madsen, L. H., Sandal, N. N. & Stougaard, J. (2005). An in silico strategy towards the development of legume genome anchor markers using comparative sequence analysis. In In Márquez, A.J. ed. Lotus japonicus handbook (pp. 233-242). Springer.

Mailund , Schierup, M. H., Pedersen, C. N. S., Mechlenborg, P., Madsen, J. N. & Schauser, L. (2005). CoaSim: A Flexible Environment for Simulating Genetic Data under Coalescent Models. BMC Bioinformatics, 6(252). http://www.biomedcentral.com/1471-2105/6/252

Jørgensen, F. G., Hobolth, A., Hornshøj, H., Bendixen, C., Fredholm, M. & Schierup, M. H. (2005). Comparative analysis of protein coding sequences from Human, Mouse and the domesticated Pig. BMC Biology, 3(2). https://doi.org/10.1186/1741-7007-3-2

Nielsen, R. & Wiuf, C. (2005). Composite likelihood estimation applied to Single Nucleotide Polymorphism (SNP) data. ISI Conference Proceedings 2005.. Paper presented at Composite likelihood estimation applied to Single Nucleotide Polymorphism (SNP) data. ISI Conference Proceedings 2005..

Christiansen, C., Mailund , Pedersen, C. N. S. & Randers, M. (2005). Computing the Quartet Distance between Trees of Arbitrary Degree. In Proceedings of the 5th International Workshop on Algorithms in Bioinformatics (WABI) (pp. 77-88)

Aagaard, L. & Villesen, P. (2005). Din indre virus. Jyllands-Posten.

Hein, J., Schierup, M. H. & Wiuf, C. (2005). Gene Genealogies, Variation and Evolution.

Schierup, M. H., Mordhorst, CH., Müller, CP. & Christensen, LS. (2005). Evidence of recombination among early-vaccination era measles virus strains. BMC Evolutionary Biology, 5(52).

Schauser, L., Wieloch, W. & Stougaard, J. (2005). Evolution of NIN-like proteins in Arabidopsis, rice and Lotus japonicus. Journal of Molecular Evolution, 60(2), 229-237. https://doi.org/10.1007/s00239-004-0144-2

Fredslund, J. (2005). Feelix. In H. Domaine (Ed.), Robotics: Cool Science Lerner Publications.

Fredsted, T. & Villesen, P. (2005). Genetik og bevaring af truede aber. Aktuel Naturvidenskab, 4, 16-19.

Displaying results 1151 to 1200 out of 1414

Revised 13.01.2026

Palle Villesen