Publications

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Fredslund, J. (2006). PHY∙FI: fast and easy online creation and manipulation of phylogeny color figures. BMC Bioinformatics, 7(315). https://doi.org/10.1186/1471-2105-7-315

Christiansen, FB. (2006). Population Genetics with a view towards Bioinformatics. Lecture Notes in Population Genetics. Eget.

Christensen, O. F. (2006). Pseudo-likelihood for non-reversible nucleotide substitution models with neighbour dependent rates. Statistical Applications in Genetics and Molecular Biology, 5(18).

Mailund , Brodal, G. S., Fagerberg, R., Pedersen, C. N. S. & Phillips, D. (2006). Recrafting the Neighbor-Joining Method. BMC Bioinformatics, 7(29).

Christensen, O. F., Roberts, G. & Sköld, M. (2006). Robust Markov chain Monte Carlo methods for spatial generalised linear mixed models. Journal of Computational and Graphical Statistics, 15, 1-17.

Schierup, M. H., Bechsgaard, J. S., Nielsen, L. H. & Christiansen, F. B. (2006). Selection at work in self-incompatible Arabidopsis lyrata: Mating patterns in a natural population. Genetics, 172, 477-484.

Christensen, L. L., Wikman, F., Wiuf, C., Madsen, B. E., Overvad, K., Tjønnland, A., Koed, K. & Ørntoft, T. F. (2006). The Association of Missense and Silent Mutations with the Development of sporadic and Familial Breast Cancer in the Danish Population. Poster session presented at 19th Meeting of the European Association for Cancer Research, Budapest, Hungary.

Bataillon, T., Mailund, T., Thorlacius, S., Steingrimsson, E., Rafnar, T., Halldorsson, M., Calian, V. & Schierup, M. H. (2006). The effective size of the Icelandic population and the prospects for LD mapping: inference from unphased microsatellite markers. European Journal of Human Genetics, 14, 1044–1053. https://doi.org/10.1038/sj.ejhg.5201669

de Silva, E., Thorne, T., Ingram, P., Agrafioti, I., Swire, J., Wiuf, C. & Stumpf, MPH. (2006). The effects of incomplete protein interaction data on structural and evolutionary inferences. BMC Biology, 4(39). https://doi.org/10.1186/1741-7007-4-39

Bach, L. A., Helvik, T. & Christiansen, F. B. (2006). The evolution of n-player cooperation—threshold games and ESS bifurcations. Journal of Theoretical Biology, 238, 426-434.

Andersen, E. S., Rosenblad, M. A., Larsen, N., Westergaard, J. C., Burks, J., Wower, I. K., Wower, J., Gorodkin, J., Samuelsson, T. & Zwieb, C. (2006). The tmRDB and SRPDB resources. Nucleic Acids Res. , 34(Database issue), D163-8.

Bechsgaard, J. S., Castric, V., Charlesworth, D., Vekemans, X. & Schierup, M. H. (2006). The transition to self-compatibility in Arabidopsis thaliana and evolution within S-haplotypes over 10 Myr. Molecular Biology and Evolution, 23(9), 1741-1750.

Ye, J., Fang, L., Zheng, H., Zhang, Y., Chen, J., Zhang, Z., Wang, J., Li, S., Li, R., Bolund, L. & Wang, J. (2006). WEGO: a web tool for plotting GO annotations. Nucleic Acids Research, 34(Web Server issue), W293-7. https://doi.org/10.1093/nar/gkl031

Mailund, T., Besenbacher, S. & Schierup, M. H. (2006). Whole genome association mapping by incompatibilities and local perfect phylogenies. BMC Bioinformatics, 7(454). https://doi.org/10.1186/1471-2105-7-454

Schauser, L., Fredslund, J., Madsen, L. H., Sandal, N. N. & Stougaard, J. (2005). A computational pipeline towards the development of comparative anchor tagged sequence (CATS) markers. In M. O. Humphrey (Ed.), Proceedings of the International Grassland Congress (IGC) (pp. 73-81). Wageningen Academic Publishers.

Schauser, L., Subrahmanyam, S., Madsen, L. H., Sandal, N. N. & Stougaard, J. (2005). An in silico strategy towards the development of legume genome anchor markers using comparative sequence analysis. In In Márquez, A.J. ed. Lotus japonicus handbook (pp. 233-242). Springer.

Mailund , Schierup, M. H., Pedersen, C. N. S., Mechlenborg, P., Madsen, J. N. & Schauser, L. (2005). CoaSim: A Flexible Environment for Simulating Genetic Data under Coalescent Models. BMC Bioinformatics, 6(252). http://www.biomedcentral.com/1471-2105/6/252

Jørgensen, F. G., Hobolth, A., Hornshøj, H., Bendixen, C., Fredholm, M. & Schierup, M. H. (2005). Comparative analysis of protein coding sequences from Human, Mouse and the domesticated Pig. BMC Biology, 3(2). https://doi.org/10.1186/1741-7007-3-2

Nielsen, R. & Wiuf, C. (2005). Composite likelihood estimation applied to Single Nucleotide Polymorphism (SNP) data. ISI Conference Proceedings 2005.. Paper presented at Composite likelihood estimation applied to Single Nucleotide Polymorphism (SNP) data. ISI Conference Proceedings 2005..

Christiansen, C., Mailund , Pedersen, C. N. S. & Randers, M. (2005). Computing the Quartet Distance between Trees of Arbitrary Degree. In Proceedings of the 5th International Workshop on Algorithms in Bioinformatics (WABI) (pp. 77-88)

Aagaard, L. & Villesen, P. (2005). Din indre virus. Jyllands-Posten.

Hein, J., Schierup, M. H. & Wiuf, C. (2005). Gene Genealogies, Variation and Evolution.

Schierup, M. H., Mordhorst, CH., Müller, CP. & Christensen, LS. (2005). Evidence of recombination among early-vaccination era measles virus strains. BMC Evolutionary Biology, 5(52).

Schauser, L., Wieloch, W. & Stougaard, J. (2005). Evolution of NIN-like proteins in Arabidopsis, rice and Lotus japonicus. Journal of Molecular Evolution, 60(2), 229-237. https://doi.org/10.1007/s00239-004-0144-2

Fredslund, J. (2005). Feelix. In H. Domaine (Ed.), Robotics: Cool Science Lerner Publications.

Fredsted, T. & Villesen, P. (2005). Genetik og bevaring af truede aber. Aktuel Naturvidenskab, 4, 16-19.

Fredsted, T. & Villesen, P. (2005). Genetik og bevaring af truede aber. Aktuel Naturvidenskab, (4).

Mailund, T. (2005). Getting Started with CoaSim — An Introduction to the Simulator CoaSim.

Koed, K., Wiuf, C., Christensen, L. L., Wikman, F., Zieger, K., Jensen, K. M.-E., Maase, H. V. D. & Ørntoft, T. F. (2005). High-density single nucleotide polymorphism array defines novel stage and location-dependent allelic imbalances in human bladder tumors. Cancer Research, 65(1), 34-45.

Mailund , Pedersen, C. N. S., Bardino, J., Vinter, B. & Karlsen, H. H. (2005). Initial experiences with GeneRecon on MiG. In Proceedings of The 2005 International Conference on Grid Computing and Applications (GCA)

Madsen, L. H., Fukai, E., Radutoiu, E. S., Yost, C. K., Sandal, N. N., Schauser, L. & Stougaard, J. (2005). LORE1, an active low-copy-number TY3-gypsy retrotransposon family in the model legume Lotus japonicus. Plant. J., 44, 372-381.

Fredsted, T., Schierup, M. H., Pertoldi, C. & Kappeler, M. (2005). Microsatellite analyses reveal fine-scale genetic structure in grey mouse lemurs (Microcebus murinus). Molecular Ecology, 14, 2363-2372.

Wernersson, R., Schierup, M. H., Jørgensen, F. G., Gorodkin, J., Panitz, F., Staerfeldt, HH., Christensen, O. F., Mailund, T., Hornshøj, H., Klein, A., Jun, W., Liu, B., Hu, S., Dong, W., Li, W., Wong, GK.-S., Yu, J., Wang, J., Bendixen, C. ... Bolund, L. (2005). Pigs in Sequence Space: A 0.66X Coverage Pig Genome Survey based on Shotgun Sequencing. BMC Genomics, 6(70). http://www.biomedcentral.com/1471-2164/6/70

Christiansen, F. B. (2005). Population Genetics with a view towards Bioinformatics. Lecture Notes in Molecular Population Genetics. Eget.

Fredslund, J., Schauser, L., Madsen, L. H., Sandal, N. N. & Stougaard, J. (2005). PriFi - Using a Multiple Alignment of Related Sequences to Find Primers for Amplification of Homologs. Nucleic Acids Research, 33(W), 516-520.

Christensen, O. F., Hobolth, A. & Jensen, J. L. (2005). Pseudo-likelihood analysis of codon substitution models with neighbor dependent rates. Journal of Computational Biology, 12, 1166-1182.

Christiansen, C., Mailund , Pedersen, C. N. S. & Randers, M. (2005). Quartet Distance between General Trees. In Proceedings of International Conference on Numerical Analysis and Applied Mathematics (ICNAAM) (pp. 796-799)

Besenbacher, S., Mailund, Westh-Nielsen, L. & Pedersen, C. N. S. (2005). RBT—A Tool for Building Refined Buneman Trees. Bioinformatics, 21(8), 1711-1712.

Zieger, K., Andersen, L. D., Wiuf, C., Jensen, J. L., Andersen, C. L., Jensen, K. M.-E. & Ørntoft, T. F. (2005). Role of activating fibroblast growth factor receptor 3 mutations in the development of bladder tumors. Clinical Cancer Research, 11(21), 7709-7719.

Stumpf, MPH. & Wiuf, C. (2005). Sampling properties of random graphs: The degree distribution. Physical Review E, 72(036118), 1-7.

Christensen, O. F., Roberts, G. & Rosenthal, J. (2005). Scaling limits for the transient phase of local Metropolis-Hastings algorithms. Journal of the Royal Statistical Society, Series B, 67, 253-268.

Ehlers, B., Maurice, S. & Bataillon, T. (2005). Sex inheritance in gynodioecious species: a polygenic view. Proceedings of the Royal Society B: Biological Sciences, 272, 1795 - 1802.

Stumpf, MPH., Ingram, PJ., Nouvel, I. & Wiuf, C. (2005). Statistical model selection methods applied to biological network data. Transactions on Computational Systems Biology, 3, 65-77.

Stumpf, MPH., Wiuf, C. & May, RM. (2005). Subnets of scale-free networks are not scale-free: Sampling properties of networks. Proceedings of the National Academy of Sciences (PNAS), 102, 4221-4224.

Fredslund, J. & Andersen, E. S. (2005). Superjordnøddernes hemmelighed. Aktuel Naturvidenskab, (6), 12-15.

Christensen, O. F., Frydenberg, M., Jensen, J. L. & Pedersen, J. G. (2005). Tests and Confidence Intervals for an Extended Variance Component Using the Modified Likelihood Ratio Statistic.

Aagaard, L., Villesen, P., Kjeldbjerg, A. L. & Pedersen, F. S. (2005). The ~30-million-year-old ERVPb1 envelope gene is evolutionarily conserved among hominoids and Old World monkeys. Genomics, 86(6).

Schierup, M. H., Jensen, T. M. & Wiuf, C. (2005). The effect of a single recombination event. Poster session presented at Genomic Studies and the HapMap, Oxford, United Kingdom.

Thøgersen, L., Olsen, J., Köhn, A., Jørgensen, P., Salek, P. & Helgaker, T. (2005). The trust-region self-consistent field method in Kohn-Sham density-functional theory. Journal of Chemical Physics, 123, 074103-1-17.

Displaying results 1151 to 1200 out of 1390

Revised 13.01.2026

Palle Villesen