Publications

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Sahana, G., Mailund, T., Lund, M. S. & Guldbrandtsen, B. (2011). Local Genealogies in a Linear Mixed Model for Genome-wide Association Mapping in Complex Pedigreed Populations. PLoS One, 6(11).

Andersen, L. N. & Asmussen, S. (2011). Local time asymptotics for centered Lévy processes with two-sided reflection. Stochastic Models, 27(2), 202-219. https://doi.org/10.1080/15326349.2011.567928

Gregersen, N., Buttenschøn, H. N., Dahl, HA., Foldager, L., Kristensen, A. S., Woldbye, D. P. D., Kofoed, P., Joensen, S., Kruse, T. A., Wang, A. G., Børglum, A. & Mors, O. (2011). Markers on chromosome 19p13 are associated with panic disorder. Poster session presented at PhD Day 2011, Aarhus University, Faculty of Health Sciences, Aarhus, Denmark.

Asmussen, S. & Hobolth, A. (2011). Markov bridges, bisection and variance reduction. Thiele Centre, Institut for Matematiske Fag, Aarhus Universitet.

Knudsen, M., Feliu, E. & Wiuf, C. H. (2011). Mathematical Modeling of Phosphorelay Dynamics. Poster session presented at The XII International Congress on Molecular Systems Biology, Lleida, Spain.

De Mita, S., Chantret, N., Loridon, K., Ronfort, J. & Bataillon, T. (2011). Molecular adaptation in flowering and symbiotic recognition pathways: insights from patterns of polymorphism in the legume Medicago truncatula. BMC Evolutionary Biology, 11(1), 229-241. https://doi.org/10.1186/1471-2148-11-229

Lie, M. A., Thomsen, R., Pedersen, C. N. S., Schiøtt, B. & Christensen, M. H. (2011). Molecular Docking with Ligand Attached Water Molecules. Journal of Chemical Information and Modeling, 51(4), 909-917. https://doi.org/10.1021/ci100510m

Grivet, D., Sebastiani, F., Alía, R., Bataillon, T., Torre, S., Zabal-Aguirre, M., Vendramin, G. G. & González-Martínez, S. C. (2011). Molecular footprints of local adaptation in two Mediterranean conifers. Molecular Biology and Evolution, 28(1), 101-16. https://doi.org/10.1093/molbev/msq190

Rafnar, T., Gudbjartsson, D. F., Sulem, P., Jonasdottir, A., Sigurdsson, A., Jonasdottir, A., Besenbacher, S., Lundin, P., Stacey, S. N., Gudmundsson, J., Magnusson, O. T., le Roux, L., Orlygsdottir, G., Helgadottir, H. T., Johannsdottir, H., Gylfason, A., Tryggvadottir, L., Jonasson, J. G., de Juan, A. ... Stefansson, K. (2011). Mutations in BRIP1 confer high risk of ovarian cancer. Nature Genetics, 43(11), 1104-7. https://doi.org/10.1038/ng.955

Sonntag, Y., Musgaard, M., Olesen, C., Schiøtt, B., Møller, J. V., Nissen, P. & Thøgersen, L. (2011). Mutual adaptation of a membrane protein and its lipid bilayer during conformational changes. Nature Communications, 2, 304. https://doi.org/10.1038/ncomms1307

Hobolth, A., Andersen, L. N. & Mailund, T. (2011). On computing the coalescence time density in an isolation-with-migration model with few samples. Genetics, 187, 1242-1243. https://doi.org/10.1534/genetics.110.124164

Larsen, J. K., Foldager, L., Bendsen, B. B. & Munk-Jørgensen, P. (2011). Prematurity and low birth weight as risk factors for the development of affective disorder, especially depression and schizophrenia: a register study. Poster session presented at American Psychiatric Association 164th Annual Meeting, Honolulu, Hawaii, United States.

Musgaard, M., Thøgersen, L. & Schiøtt, B. (2011). Protonation States of Important Acidic Residues in the Central Ca²⁺ Ion Binding Sites of the Ca²⁺-ATPase: A Molecular Modeling Study. Biochemistry, 50(51), 11109-11120. https://doi.org/10.1021/bi201164b

Abdallah, M., Greaves-Lord, K., Grove, J., Nørgaard-Pedersen, B., Hougaard, D. M. & Mortensen, E. L. (2011). Psychiatric Comorbidities in Autism Spectrum Disorders: Findings from a Danish Historic Birth Cohort. European Child & Adolescent Psychiatry, 20(11-12), 599-601. https://doi.org/10.1007/s00787-011-0220-2

Simonsen, M. & Pedersen, C. N. S. (2011). Rapid Computation of Distance Estimators from Nucleotide and Amino Acid Alignments. In Proceedings of the 26th Annual ACM Symposium on Applied Computing Association for Computing Machinery.

Østergaard, S. D. & Foldager, L. (2011). Reply. Acta Psychiatrica Scandinavica, 124(1), 75-6. https://doi.org/10.1111/j.1600-0447.2011.01694.x

Hvidtjørn, D., Grove, J., Schendel, D., Schieve, L., Sværke, C., Ernst, E. & Thorsen, P. (2011). Risk of Autism Spectrum Disorders in children born after assisted conception. A population based follow-up study. Journal of Epidemiology & Community Health, 65(6), 497-502. https://doi.org/10.1136/jech.2009.093823

Hollegaard, M. V., Grove, J., Grauholm, J., Kreiner-Moller, E., Bonnelykke, K., Nørgaard, M., Benfield, T. L., Norgaard-Pedersen, B., Mortensen, P. B., Mors, O., Sørensen, H. T., Harboe, Z. B., Børglum, A., Demontis, D., Ørntoft, T. F., Bisgaard, H. & Hougaard, D. M. (2011). Robustness of genome-wide scanning using archived dried blood spot samples as a DNA source. BMC Genetics, 12(1), 58. https://doi.org/10.1186/1471-2156-12-58

Østergaard, S. D., Dinesen, P. T. & Foldager, L. (2011). Sensitivity x PPV is a recognized test called the clinical utility index (CUI+). The Authors Reply. European Journal of Epidemiology, 26, 252-252. https://doi.org/10.1007/s10654-011-9561-x

Lorenzen, E. D., Nogués-Bravo, D., Orlando, L., Weinstock, J., Binladen, J., Marske, K. A., Ugan, A., Borregaard, M. K., Gilbert, M. T. P., Nielsen, R., Ho, S. Y. W., Goebel, T., Graf, K. E., Byers, D., Stenderup, J., Rasmussen, M., Campos, P., Leonard, J. A., Koepfli, K.-P. ... Willerslev, E. (2011). Species-specific responses of Late Quaternary megafauna to climate and humans. Nature, 479(7373), 359-64. https://doi.org/10.1038/nature10574

Andersen, L. N. (2011). Subexponential loss rate asymptotics for Lévy processes. Mathematical Methods of Operations Research, 73(1), 91-108. https://doi.org/10.1007/s00186-010-0335-0

Hobolth, A. & Jensen, J. L. (2011). Summary statistics for endpoint-conditioned continuous-time Markov chains. Journal of Applied Probability, 48(4), 911-924. https://doi.org/10.1239/jap/1324046009

Balslev, H., Arge, L. A., Svenning, J.-C., Schierup, M. H. & Jensen, C. S. (Eds.) (2011). Symposium on Biodiversity in the Silicon Age - Abstracts. The Royal Danish Academy of Sciences and Letters.

Østergaard, S. D. & Foldager, L. (2011). The association between physical illness and major depressive episode in general practice. Acta Psychiatrica Scandinavica, 123(4), 290-296. https://doi.org/10.1111/j.1600-0447.2010.01668.x

Stukenbrock, E. H., Bataillon, T., Dutheil, J. Y., Hansen, T. T., Li, R., Zala, M., McDonald, B. A., Wang, J. & Schierup, M. H. (2011). The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species. Genome Research, 21, 2157-2166. https://doi.org/10.1101/gr.118851.110

Kristensen, T. G., Nielsen, J. & Pedersen, C. N. S. (2011). Using Inverted Indices for Accelerating LINGO Calculations. Journal of Chemical Information and Modeling, 51(3), 597-600. https://doi.org/10.1021/ci100437e

Andersen, F. F., Villesen, P., Knudsen, B., Wiuf, C. H., Desideri, A. & Knudsen, B. R. (2011). Utilization of Computer Science for Construction and Characterization of DNA nano-Structures. In DNA Microarrays, Synthesis and Synthetic DNA Nova Science Publishers.

Kristensen, T. G. (2011). Virtual screening algorithms. Department of Computer Science, Aarhus University.

Branca, A., Paape, T. D., Zhou, P., Briskine, R., Farmer, A. D., Mudge, J., Bharti, A. K., Woodward, J. E., May, G. D., Gentzbittel, L., Ben, C., Denny, R., Sadowsky, M. J., Ronfort, J., Bataillon, T., Young, N. D. & Tiffin, P. (2011). Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula. Proceedings of the National Academy of Sciences (PNAS), 108(42), 864-870. https://doi.org/10.1073/pnas.1104032108

Nielsen, J., le Quach, P., Emborg, C., Foldager, L. & Correll, C. U. (2010). 10-Year trends in the treatment and outcomes of patients with first-episode schizophrenia. Acta Psychiatrica Scandinavica, 122(5), 356-66. https://doi.org/10.1111/j.1600-0447.2010.01576.x

Mai, D. M., Sahana, G., Christiansen, F. & Guldbrandtsen, B. (2010). A genome-wide association study for milk production traits in Danish Jersey cattle using a 50K single nucleotide polymorphism chip. Journal of Animal Science, 88, 3522-3528.

Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K. S., Manichanh, C., Nielsen, T., Pons, N., Levenez, F., Yamada, T., Mende, D. R., Li, J., Xu, J., Li, S., Li, D., Cao, J., Wang, B., Liang, H., Zheng, H. ... MetaHIT Consortium (2010). A human gut microbial gene catalogue established by metagenomic sequencing. Nature, 464(7285), 59-65. https://doi.org/10.1038/nature08821

Feliu, E., Knudsen, M., Wiuf, C. H. & Andersen, L. N. (2010). An Algebraic Approach to Signaling Cascades with n Layers. Poster session presented at The 11th International Conference on Systems Biology, Edinburgh, United Kingdom.

Zacharov, T. F., Qin, P., Buttenschøn, H. N., Kristensen, I. B., Christoffersen, S., Hansen, N. F., Foldager, L., Mortensen, P. B., Børglum, A. & Mors, O. (2010). An association study of suicide and candidate genes in the serotonergic system. Abstract from Psykiatriens 5. Forskningsdag, Risskov, Denmark.

Sahana, G., Lund, M. S., Mailund, T. & Guldbrandtsen, B. (2010). A new powerful method for genome-wide association mapping using local phylogenies in a mixed model. Paper presented at 9th World Congress on Genetics Applied to Livestock Production, Leipzig, Germany.

Pedersen, K., Wiechec, E., Madsen, B. E., Overgaard, J. & Hansen, L. L. (2010). A simple way to evaluate self-designed probes for tumor specific Multiplex Ligation-dependent Probe Amplification (MLPA). BMC Research Notes, 3(1), 179.

Gregersen, N., Buttenschøn, H. N., Dahl, H. A., Foldager, L., Als, T. D., Wang, A., Joensen, S., Kristensen, A. S., Woldbye, D., Koefoed, P., Kruse, T. A., Børglum, A. & Mors, O. (2010). Association mellem markører på kromosom 19p13 og panikangst. Poster session presented at Psykiatriens 5. Forskningsdag, Risskov, Denmark.

Kristensen, T. G., Nielsen, J. & Pedersen, C. N. S. (2010). A tree-based method for the rapid screening of chemical fingerprints. Algorithms for Molecular Biology, 5(9). https://doi.org/10.1186/1748-7188-5-9

Simonsen, M., Mailund, T. & Pedersen, C. N. S. (2010). Building Very Large Neighbour-Joining Trees. In A. Fred, J. Filipe & H. Gamboa (Eds.), BIOINFORMATICS 2010: Proceedings of the First International Conference on Bioinformatics (part of the 3rd International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2010) (pp. 26). Institute for Systems and Technologies of Information, Control and Communication.

Nyegaard, M., Demontis, D., Foldager, L., Hedemand, A., Flint, T. J., Sørensen, K. M., Andersen, P. S., Nordentoft, M., Werge, T., Pedersen, C. B., Hougaard, D. M., Mortensen, P. B., Mors, O. & Børglum, A. D. (2010). CACNA1C (rs1006737) is associated with schizophrenia. Molecular Psychiatry, 15(2), 119-21. https://doi.org/10.1038/mp.2009.69

Kristensen, T. G. & Pedersen, C. N. S. (2010). Data Structures for Accelerating Tanimoto Queries on Real Valued Vectors. In V. Moulton & M. Singh (Eds.), Algorithms in Bioinformatics: 10th International Workshop (WABI 2010) (Vol. 6293, pp. 28-39). Springer.

Li, R., Zhu, H., Ruan, J., Qian, W., Fang, X., Shi, Z., Li, Y., Li, S., Shan, G., Kristiansen, K., Li, S., Yang, H., Wang, J. & Wang, J. (2010). De novo assembly of human genomes with massively parallel short read sequencing. Genome Research, 20(2), 265-72. https://doi.org/10.1101/gr.097261.109

Justesen, P. (2010). Distinct Candidates Optimization: A Novel Approach to Applied Evolutionary Multi- and Many-Objective Optimization (1 ed.).

Christiansen, F. (2010). Epidemier: Truslen fra det ukendte. In M. A. Nielsen (Ed.), Det fremmede som historisk drivkraft: Danmark efter 1742 (pp. 68-76). Det Kongelige Danske Videnskabernes Selskab.

Nexø, B. A., Laska, M. J., Christensen, T., Møller-Larsen, A., Pedersen, F. S. & Villesen, P. (2010). Estimating disease risk of individual having/developing multiple sclerosis involves in genetic material sample from individual, assessing sequence polymorphism in specific genetic regions of human chromosome, obtaining and estimating step. (Patent No. WO2010112033).

Lohmann, G. V., Shimoda, Y., Nielsen, M. W., Jørgensen, F. G., Grossmann, C., Sandal, N., Sørensen, K., Thirup, S., Madsen, L. H., Tabata, S., Sato, S., Stougaard, J. & Radutoiu, S. (2010). Evolution and regulation of the Lotus japonicus LysM receptor gene family. Molecular plant-microbe interactions, 23(4), 510-21. https://doi.org/10.1094/MPMI-23-4-0510

Wang, J., Zhang, J., Li, R., Zheng, H., Li, J., Zhang, Y., Li, H., Ni, P., Li, S., Li, S., Wang, J., Liu, D., McDermott, J., Samudrala, R., Liu, S., Wang, J., Yang, H., Yu, J. & Wong, G. K.-S. (2010). Evolutionary transients in the rice transcriptome. Genomics Proteomics & Bioinformatics, 8(4), 211-28. https://doi.org/10.1016/S1672-0229(10)60023-X

Branscheid, A., Sieh, D., Pant, B. D., May, P., Devers, E. A., Elkrog, A., Schauser, L., Scheible, W.-R. & Krajinski, F. (2010). Expression pattern suggests a role of MiR399 in the regulation of the cellular response to local Pi increase during arbuscular mycorrhizal symbiosis. Molecular plant-microbe interactions, 23(7), 915-26. https://doi.org/10.1094/MPMI-23-7-0915

Penner, R., Knudsen, M., Wiuf, C. H. & Andersen, J. E. (2010). Fatgraph Models of Proteins. Communications on Pure and Applied Mathematics, 63(10), 1249-1297. https://doi.org/10.1002/cpa.20340

Andersen, C. L., Lamy, P., Thorsen, K., Kjeldsen, E., Wikman, F., Villesen, P., Øster, B., Laurberg, S. & Ørntoft, T. F. (2010). Frequent genomic loss at chr16p13.2 is associated with poor prognosis in colorectal cancer. International Journal of Cancer. https://doi.org/10.1002/ijc.25841

Displaying results 901 to 950 out of 1405

Revised 13.01.2026

Palle Villesen