Publications

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Sanggaard, K. W., Bechsgaard, J. S., Fang, X., Duan, J., Dyrlund, T. F., Gupta, V., Jiang, X., Cheng, L., Fan, D., Feng, Y., Han, L., Huang, Z., Wu, Z., Liao, L., Settepani, V., Thøgersen, I. B., Vanthournout, B., Wang, T., Zhu, Y. ... Wang, J. (2014). Spider genomes provide insight into composition and evolution of venom and silk. Nature Communications, 5, Article 3765. https://doi.org/10.1038/ncomms4765

Nam, K., Munch, K., Hobolth, A., Y. Dutheil, J., Veeramah, K., Woerner, A., F. Hammer, M., Ape Genome Diversity Project, G., Mailund, T. & H. Schierup, M. (2014). Strong selective sweeps associated with ampliconic regions in great ape X chromosomes. ArXiv.

Bay-Richter, C., Buttenschøn, H. N., Foldager, L., Kolstad, H. A., Kaerlev, L., Mors, O. & Wegener, G. (2014). Toxoplasma gondii seropositivity is positively associated with anxiety and burnout-syndrome. Abstract from CINP World Congress, Vancouver, Canada. https://doi.org/10.1017/S1461145714000741

Sand, A., Holt, M. K., Johansen, J., Brodal, G. S., Mailund, T. & Pedersen, C. N. S. (2014). tqDist: A Library for Computing the Quartet and Triplet Distances Between Binary and General Trees. Bioinformatics, 30(4), 2079-2080. https://doi.org/10.1093/bioinformatics/btu157

Munch, K., Schierup, M. H. & Mailund, T. (2014). Unraveling recombination rate evolution using ancestral recombination maps. BioEssays, 36(9), 892-900. https://doi.org/10.1002/bies.201400047

Aagaard, J., Nissen, F., Wernlund, A., Foldager, L. & Merinder, L. (2014). Valuable intervention against the excess mortality of psychiatric patients. Poster session presented at Annual Conference of the International Society for Bipolar Disorder, Seoul, Korea, Republic of. https://doi.org/10.1111/bdi.12189

Li, S., Besenbacher, S., Li, Y., Kristiansen, K., Grarup, N., Albrechtsen, A., Sparsø, T. H., Korneliussen, T. S., Hansen, T., Wang, J., Nielsen, R., Pedersen, O., Bolund, L. & Schierup, M. H. (2014). Variation and association to diabetes in 2000 full mtDNA sequences mined from an exome study in a Danish population. European Journal of Human Genetics. https://doi.org/10.1038/ejhg.2013.282

Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., da Fonseca, R. R., Li, J., Zhang, F., Li, H., Zhou, L., Narula, N., Liu, L. ... Zhang, G. (2014). Whole-genome analyses resolve early branches in the tree of life of modern birds. Science, 346(6215), 1320-31. https://doi.org/10.1126/science.1253451

Thorgeirsson, T. E., Gudbjartsson, D. F., Sulem, P., Besenbacher, S., Styrkarsdottir, U., Thorleifsson, G., Walters, G. B., Furberg, H., Sullivan, P. F., Marchini, J., McCarthy, M. I., Steinthorsdottir, V., Thorsteinsdottir, U., Stefansson, K. & TAG Consortium (2013). A common biological basis of obesity and nicotine addiction. Translational Psychiatry, 3, e308. https://doi.org/10.1038/tp.2013.81

Sand, A., Holt, M. K., Johansen, J., Fagerberg, R., Pedersen, C. N. S., Brodal, G. S. & Mailund, T. (2013). Algorithms for Computing the Triplet and Quartet Distances for Binary and General Trees. Biology, 2(4), 1189-1209. https://doi.org/10.3390/biology2041189

Tataru, P., Sand, A., Hobolth, A., Mailund, T. & Pedersen, C. N. S. (2013). Algorithms for Hidden Markov Models Restricted to Occurrences of Regular Expressions. Biology, 2(4), 1282-1295. https://doi.org/10.3390/biology2041282

Abdallah, M., Larsen, N., Grove, J., Nørgaard-Pedersen, B., Thorsen, P., Mortensen, E. L. & Hougaard, D. M. (2013). Amniotic Fluid Inflammatory Cytokines: Potential Markers of Immunologic Dysfunction in Autism Spectrum Disorders. World Journal of Biological Psychiatry, 14(7), 528-538. https://doi.org/10.3109/15622975.2011.639803

Buttenschøn, H. N., Flint, T. J., Foldager, L., Qin, P., Christoffersen, S., Hansen, N. F., Kristensen, I. B., Mortensen, P. B., Børglum, A. D. & Mors, O. (2013). An association study of suicide and candidate genes in the serotonergic system. Journal of Affective Disorders, 148(2-3), 291-8. https://doi.org/10.1016/j.jad.2012.12.011

Sand, A., Pedersen, C. N. S., Mailund, T., Brodal, G. S. & Fagerberg, R. (2013). A practical O(n log² n) time algorithm for computing the triplet distance on binary trees. B M C Bioinformatics, 14(Suppl 2), S18. https://doi.org/10.1186/1471-2105-14-S2-S18

Hollegaard, M. V., Grauholm, J., Nielsen, R., Grove, J., Mandrup, S. & Hougaard, D. M. (2013). Archived neonatal dried blood spot samples can be used for accurate whole genome and exome-targeted next-generation sequencing. Molecular Genetics and Metabolism, 110(1-2), 65-72. https://doi.org/10.1016/j.ymgme.2013.06.004

Bataillon, T., Joyce, P. & Sniegowski, P. (2013). As it happens: current directions in experimental evolution. Biology Letters, 9(1), Article 20120945. https://doi.org/10.1098/rsbl.2012.0945

Sükösd, Z., Knudsen, B., Anderson, J. WJ., Novák, A., Kjems, J. & Pedersen, C. N. S. (2013). Characterising RNA secondary structure space using information entropy. B M C Bioinformatics, 14 (Suppl 2), 1-9. Article S22. https://doi.org/10.1186/1471-2105-14-S2-S22

Foldager, L., Als, T. D. & Grove, J. (2013). Comparison of methods for genome-wide gene-environment interaction analysis. Poster session presented at XXIst World Congress of Psychiatric Genetics, Boston, United States.

Siuda, I. & Thøgersen, L. (2013). Conformational flexibility of the leucine binding protein examined by protein domain coarse-grained molecular dynamics. Journal of Molecular Modeling, 19(11), 4931-4945. https://doi.org/10.1007/s00894-013-1991-9

Streja, E., Wu, C., Uldall, P. V., Grove, J., Arah, O. & Olsen, J. (2013). Congenital cerebral palsy, child sex and parent cardiovascular risk. PLOS ONE, 8(11), e79071. https://doi.org/10.1371/journal.pone.0079071

Buttenschøn, H. N., Elfving, B., Foldager, L., Plougmann, P. H., Andersen, J. H., Grynderup, M. B., Kærgaard, A., Hansen, Å. M., Kolstad, H. A., Kærlev, L., Bonde, J. P., Mikkelsen, S., Thomsen, J. F., Børglum, A., Wegener, G. & Mors, O. (2013). Depression and BMI influences the serum vascular endothelial growth factor level. Poster session presented at XXIst World Congress of Psychiatric Genetics, Boston, United States.

Brodal, G. S., Fagerberg, R., Mailund, T., Pedersen, C. N. S. & Sand, A. (2013). Efficient Algorithms for Computing the Triplet and Quartet Distance Between Trees of Arbitrary Degree. The Annual A C M - S I A M Symposium on Discrete Algorithms. Proceedings, 24, 1814-1832. http://knowledgecenter.siam.org/0236-000098/0236-000098/1

Nissen, K. K., Laska, M. J., Hansen, B., Terkelsen, T., Villesen, P., Bahrami, S., Petersen, T., Pedersen, F. S. & Nexø, B. A. (2013). Endogenous retroviruses and multiple sclerosis-new pieces to the puzzle. B M C Neurology, 13(111), 1-5. https://doi.org/10.1186/1471-2377-13-111

Sükösd, Z., Swenson, M. S., Kjems, J. & Heitsch, C. E. (2013). Evaluating the accuracy of SHAPE-directed RNA secondary structure predictions. Nucleic Acids Research, 41(5), 2807-2816. https://doi.org/10.1093/nar/gks1283

Castagnini, A., Foldager, L. & Bertelsen, A. (2013). Excess mortality of acute and transient psychotic disorders: comparison with bipolar affective disorder and schizophrenia. Acta Psychiatrica Scandinavica, 128(5), 370-375. https://doi.org/10.1111/acps.12077

Feldman, M. W., Christiansen, F. B. & Otto, S. P. (2013). Gene-culture co-evolution: teaching, learning, and correlations between relatives. Israel Journal of Ecology & Evolution, 59(2), 72-91. https://doi.org/10.1080/15659801.2013.853435

Simonsen, M., Christensen, M. H., Thomsen, R. & Pedersen, C. N. S. (2013). GPU-Accelerated High-Accuracy Molecular Docking using Guided Differential Evolution. In S. tsutsui & P. Collet (Eds.), Massively Parallel Evolutionary Computation on GPGPUs Springer Publishing Company.

Prado-Martinez, J., Sudmant, P. H., Kidd, J. M., Li, H., Kelley, J. L., Lorente-Galdos, B., Veeramah, K. R., Woerner, A. E., O'Connor, T. D., Santpere, G., Cagan, A., Theunert, C., Casals, F., Laayouni, H., Munch, K., Hobolth, A., Halager, A. E., Malig, M., Hernandez-Rodriguez, J. ... Marques-Bonet, T. (2013). Great ape genetic diversity and population history. Nature, 499, 471–475. https://doi.org/10.1038/nature12228

Radel, D., Sand, A. & Steel, M. (2013). Hide and seek: placing and finding an optimal tree for thousands of homoplasy-rich sequences. Molecular Phylogenetics and Evolution, 69(3), 1186–1189. https://doi.org/10.1016/j.ympev.2013.08.001

Ahdidan, J., Foldager, L., Rosenberg, R., Rodell, A., Videbech, P. & Mors, O. (2013). Hippocampal volume and serotonin transporter polymorphism in major depressive disorder. Acta Neuropsychiatrica, 25(4), 206-214. https://doi.org/10.1017/neu.2013.3

Jørgensen, F. G., Mailund, T., Schierup, M. H. & Kjærgaard, P. C. (2013). Hvor kommer du fra? En undersøgelse af danskernes genetiske historie. Biofag, 3, 18-20. http://hvorkommerdufra.dk/fileadmin/hvorkommerdufra.dk/Artikel_fra_biofag.pdf

Grove, J., Foldager, L., Demontis, D., Hollegaard, M. V., Pedersen, C. B., Yolken, R. H., Hougaard, D. M., Mors, O., Mortensen, P. B., The Psychiatric Genomics Consortium – Schizophrenia & Børglum, A. (2013). Interaction between polygenic scores for schizophrenia and infection by herpes simples virus 1 and 2. Poster session presented at XXIst World Congress of Psychiatric Genetics, Boston, United States.

Hollegaard, M. V., Skogstrand, K., Thorsen, P., Nørgaard-Petersen, B., Hougaard, D. & Grove, J. (2013). Joint analysis of SNPs and proteins identifies regulatory IL18 gene variations decreasing the chance of spastic cerebral palsy. Human Mutation, 34(1).

Devantier, T. A., Nørgaard, B. L., Sand, N. P., Mols, R. E., Foldager, L., Diederichsen, A. C. P., Thomsen, K. K., Jensen, J. M. & Videbech, P. (2013). Lack of Correlation Between Depression and Coronary Artery Calcification in a Non-Selected Danish Population. Psychosomatics, 54(5), 458-65. https://doi.org/10.1016/j.psym.2013.01.005

Castagnini, A., Foldager, L. & Bertelsen, A. (2013). Long-term stability of acute and transient psychotic disorders. The Australian & New Zealand Journal of Psychiatry, 47(1), 59-64. https://doi.org/10.1177/0004867412461692

Sengpiel, V., Elind, E., Bacelis, J., Nilsson, S., Grove, J., Myhre, R., Haugen, M., Margrete Meltzer, H., Alexander, J., Jacobsson, B. & Brantsæter, A.-L. (2013). Maternal caffeine intake during pregnancy is associated with birth weight but not with gestational length: results from a large prospective observational cohort study. B M C Medicine, 11(42). https://doi.org/10.1186/1741-7015-11-42

Kristensen, T. G., Nielsen, J. & Pedersen, C. N. S. (2013). Methods for Similarity-Based Virtual Screening. Computational and Structural Biotechnology Journal, 5(6). https://doi.org/10.5936/csbj.201302009

W. Abdallah, M., Larsen, N., Grove, J., Bonefeld-Jørgensen, E. C., Nørgaard-Pedersen, B., M. Hougaard , D. & L. Mortensen, E. (2013). Neonatal chemokine levels and risk of autism spectrum disorders: Findings from a Danish historic birth cohort follow-up study. Cytokine, 61(2), 370–376. https://doi.org/10.1016/j.cyto.2012.11.015

W. Abdallah, M., L. Mortensen, E., Greaves-Lord, K., Larsen, N., Bonefeld-Jørgensen, E. C., Nørgaard-Pedersen, B., M. Hougaard, D. & Grove, J. (2013). Neonatal Levels of Neurotrophic Factors and Risk of Autism Spectrum Disorders. Acta Psychiatrica Scandinavica, 128(1). https://doi.org/10.1111/acps.12020

Anderson, J. W. J., Haas, P. A., Mathieson, L.-A., Volynkin, V., Lyngsø, R., Tataru, P. & Hein, J. (2013). Oxfold: Kinetic Folding of RNA using Stochastic Context-Free Grammars and Evolutionary Information. Bioinformatics, 29(6), 704-710. https://doi.org/10.1093/bioinformatics/btt050

Dalby, R. B., Elfving, B., Poulsen, P. H. P., Foldager, L., Frandsen, J., Videbech, P. & Rosenberg, R. (2013). Plasma brain-derived neurotrophic factor and prefrontal white matter integrity in late-onset depression and normal aging. Acta Psychiatrica Scandinavica, 128(5), 387-396. https://doi.org/10.1111/acps.12085

Anderson, J. W., Novák, A., Sükösd, Z., Golden, M., Arunapuram, P., Edvardsson, I. & Hein, J. (2013). Quantifying variances in comparative RNA secondary structure prediction. B M C Bioinformatics, 14, Article 149. https://doi.org/10.1186/1471-2105-14-149

Nexø, B. A., Hansen, B., Nissen, K. K., Gundestrup, L., Terkelsen, T., Villesen, P., Bahrami, S., Petersen, T., Pedersen, F. S. & Laska, M. J. (2013). Restriction genes for retroviruses influence the risk of multiple sclerosis. PLOS ONE, 8(9), e74063. https://doi.org/10.1371/journal.pone.0074063

Møllegaard Friborg, R., Bjørndalen, J. M. & Vinter, B. (2013). Scaling PyCSP. Paper presented at Communicating Process Architectures 2013, Edinburgh, United Kingdom.

Paape, T., Bataillon, T., Zhou, P., J Y Kono, T., Briskine, R., Young, N. D. & Tiffin, P. (2013). Selection, genome-wide fitness effects and evolutionary rates in the model legume Medicago truncatula. Molecular Ecology, 22(13), 3525-3538. https://doi.org/10.1111/mec.12329

Li, S., Li, R., Li, H., Lu, J., Li, Y., Bolund, L., Schierup, M. H. & Wang, J. (2013). SOAPindel: efficient identiﬁcation of indels from short paired reads. Genome Research, 23(1), 195-200. https://doi.org/10.1101/gr.132480.111

Holmstrup, M., Sørensen, J. G., Schmidt, I. K., Nielsen, P. L., Mason, S., Tietema, A., Smith, A. R., Bataillon, T., Beier, C. & Ehlers, B. K. (2013). Soil microarthropods are only weakly impacted after 13 years of repeated drought treatment in wet and dry heathland soils. Soil Biology & Biochemistry, 66, 110-118. https://doi.org/10.1016/j.soilbio.2013.06.023

Arunapuram, P., Edvardsson, I., Golden, M., Anderson, J. W. J., Novák, A., Sükösd, Z. & Hein, J. (2013). StatAlign 2.0: Combining statistical alignment with RNA secondary structure prediction. Bioinformatics, 29(5), 654-655. https://doi.org/10.1093/bioinformatics/btt025

Sand, A. & Steel, M. (2013). The standard lateral gene transfer model is statistically consistent for pectinate four-taxon trees. Journal of Theoretical Biology, 335, 295-298. https://doi.org/10.1016/j.jtbi.2013.07.002

Roug, A. S., Nederby, L., Kjeldsen, E., Villesen, P. & Nyvold, C. G. (2013). Two Hematological Pre-Malignancies In a Pair Of Homozygous Twins Revealing Differences In Their Pre-and Postnatal Development. Blood, 122(21), 5262-5262.

Displaying results 701 to 750 out of 1355

Revised 21.08.2024

Palle Villesen