Publications

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Bataillon, T., Galtier, N., Bernard, A., Cryer, N. H. K., Faivre, N., Santoni, S., Severac, D., Mikkelsen, T., Larsen, K., Beier, C., Sørensen, J. G., Holmstrup, M. & Ehlers, B. (2016). A replicated climate change field experiment reveals rapid evolutionary response in an ecologically important soil invertebrate. Global Change Biology, 22(7), 2370-2379. https://doi.org/10.1111/gcb.13293

Aagaard, J., Buus, N., Wernlund, A. G., Foldager, L. & Merinder, L. (2016). Clinically useful predictors for premature mortality among psychiatric patients visiting a psychiatric emergency room. International Journal of Social Psychiatry, 62(5), 462-470. https://doi.org/10.1177/0020764016642490

Agrawal, A. F. & Hartfield, M. (2016). Coalescence with background and balancing selection in systems with Bi- and uniparental reproduction: Contrasting partial asexuality and selfing. Genetics, 202(1), 313-326. https://doi.org/10.1534/genetics.115.181024

Hartfield, M., Wright, S. I. & Agrawal, A. F. (2016). Coalescent times and patterns of genetic diversity in species with facultative sex: Effects of gene conversion, population structure, and heterogeneity. Genetics, 202(1), 297-312. https://doi.org/10.1534/genetics.115.178004

Nielsen, L. S., Lindholst, C. & Villesen, P. (2016). Cocaine classification using alkaloid and residual solvent profiling. Forensic Science International, 269, 42-49. https://doi.org/10.1016/j.forsciint.2016.11.007

Søndergaard, D. A., Knudsen, M. & Pedersen, C. S. (2016). Computational Classification of P-Type ATPases. Methods in Molecular Biology, 1377, 493-502. https://doi.org/10.1007/978-1-4939-3179-8

Knudsen, M., Søndergaard, D. A., Tofting-Olesen, C., Hansen, F. T., Brodersen, D. E. & Pedersen, C. S. (2016). Computational discovery of specificity-conferring sites in non-ribosomal peptide synthetases. Bioinformatics, 32(3), 325-329. https://doi.org/10.1093/bioinformatics/btv600

Lobon, I., Tucci, S., de Manuel, M., Ghirotto, S., Benazzo, A., Prado-Martinez, J., Lorente-Galdos, B., Nam, K., Dabad, M., Hernandez-Rodriguez, J., Comas, D., Navarro, A., Schierup, M. H., Andrés, A. M., Barbujani, G., Hvilsom, C. & Marques-Bonet, T. (2016). Demographic History of the Genus Pan Inferred from Whole Mitochondrial Genome Reconstructions. Genome Biology and Evolution, 8(6), 2020-2030. https://doi.org/10.1093/gbe/evw124

Waltoft, B. L. (2016). Designs and Methods for Association Studies and Population Size Inference in Statistical Genetics. Aarhus Universitet.

Lucotte, E. A., Laurent, R., Heyer, E., Segurel, L. & Toupance, B. (2016). Detection of Allelic Frequency Differences between the Sexes in Humans: A Signature of Sexually Antagonistic Selection. Genome Biology and Evolution, 8(5), 1489-1500. https://doi.org/10.1093/gbe/evw090

Dahl-Pedersen, K., Foldager, L., Houe, H., Herskin, M. S. & Thomsen, P. T. (2016). Do farmers, veterinarians and livestock drivers agree when assessing dairy cow lameness and fitness for transport. In Abstracts book (pp. 161)

Castagnini, A., Foldager, L., Caffo, E. & Thomsen, P. H. (2016). Early-adult outcome of child and adolescent mental disorders as evidenced by a national-based case register survey. European Psychiatry, 38, 45-50. https://doi.org/10.1016/j.eurpsy.2016.04.005

Blanquart, F. & Bataillon, T. (2016). Epistasis and the Structure of Fitness Landscapes: Are Experimental Fitness Landscapes Compatible with Fisher's Geometric Model? Genetics, 203(2), 847-862. https://doi.org/10.1534/genetics.115.182691

Jimenez Mena, B. (2016). Estimation of the effective population size (Ne) and its application in the management of small populations.

Hartfield, M. (2016). Evolutionary genetic consequences of facultative sex and outcrossing. Journal of Evolutionary Biology, 29(1), 5-22. https://doi.org/10.1111/jeb.12770

Finster, K., Wang, T., Borchsenius, F. & Christiansen, F. B. (Eds.) (2016). Evolutionsbiologiske milepæle. (1 ed.) Aarhus Universitetsforlag.

Leppälä, K. (2016). EXPLICIT LOWER BOUNDS FOR LINEAR FORMS. Mathematics of Computation, 85(302), 2995-3008. https://doi.org/10.1090/mcom/3078

Abascal, F., Corvelo, A., Cruz, F., Villanueva-Cañas, J. L., Vlasova, A., Marcet-Houben, M., Martínez-Cruz, B., Cheng, J. Y., Prieto, P., Quesada, V., Quilez, J., Li, G., García, F., Rubio-Camarillo, M., Frias, L., Ribeca, P., Capella-Gutiérrez, S., Rodríguez, J. M., Câmara, F. ... Godoy, J. A. (2016). Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx. Genome Biology (Online), 17(1), 251. Article 251. https://doi.org/10.1186/s13059-016-1090-1

Hanghøj, K., Seguin, A., Schubert, M., Madsen, T., Pedersen, J. S., Willerslev, E. & Orlando, L. (2016). Fast, accurate and automatic ancient nucleosome and methylation maps with epiPALEOMIX. Molecular Biology and Evolution, 33(12), 3284-3298. https://doi.org/10.1093/molbev/msw184

Hernandez-de Sosa, N., Athanasiadis, G., Malouf, J., Laiz, A., Muñoz-Marin, A. M., Herrera, S., Farrerons, J., Soria, J. M. & Casademont, J. (2016). Genetic Contribution of Femoral Neck Bone Geometry to the Risk of Developing Osteoporosis: A Family-Based Study. PLoS One, 11(5), Article 0154833. https://doi.org/10.1371/journal.pone.0154833

Jimenez Mena, B., Hospital, F. & Bataillon, T. (2016). Heterogeneity of effective population size and its implications in conservation genetics and animal breeding. Conservation Genetics Resources, 8(1), 35-41. https://doi.org/10.1007/s12686-015-0508-5

Shah, N., Hirakawa, H., Kusakabe, S., Sandal, N., Stougaard, J., Schierup, M. H., Sato, S. & Andersen, S. U. (2016). High-resolution genetic maps of Lotus japonicus and L. burttii based on re-sequencing of recombinant inbred lines. D N A Research, 23(5), 487-495. https://doi.org/10.1093/dnares/dsw033

Hobolth, A. (2016). Hvem er bedst? metoder til rangering i sport og videnskab. Aktuel Naturvidenskab, 5, 26-29.

Nielsen, L. S., Lindholst, C. & Villesen, P. (2016). Illegal drugs and bioinformatics - Classification and stability of amphetamine impurities applied in criminal investigations.

Mun, T., Bachmann, A., Gupta, V., Stougaard, J. & Andersen, S. U. (2016). Lotus Base: An integrated information portal for the model legume Lotus japonicus. Scientific Reports, 6, Article 39447. https://doi.org/10.1038/srep39447

Nielsen, S., Simonsen, S. & Hobolth, A. (2016). Inferring Population Genetic Parameters: Particle Filtering, HMM, Ripley’s K-Function or Runs of Homozygosity? In M. Frith & C. Nørgaard Storm Pedersen (Eds.), Algorithms in Bioinformatics - 16th International Workshop, WABI 2016, Proceedings (Vol. 9838, pp. 234-245). Springer. https://doi.org/10.1007/978-3-319-43681-4_19

Hancl, J. & Leppälä, K. (2016). IRRATIONALITY MEASURES FOR CONTINUED FRACTIONS WITH ASYMPTOTIC CONDITIONS. Kyushu journal of mathematics, 70(2), 205-216. https://doi.org/10.2206/kyushujm.70.205

Wiuf, C., Pallesen, J., Foldager, L. & Grove, J. (2016). LandScape: a simple method to aggregate p--Values and other stochastic variables without a priori grouping. Statistical Applications in Genetics and Molecular Biology, 15(4), 349-361. https://doi.org/10.1515/sagmb-2015-0085

Cheng, J. Y. (2016). Learning with Admixture: Modeling, Optimization, and Applications in Population Genetics. http://www.jade-cheng.com/au/tmp/thesis/thesis.pdf

Hartfield, M. & Glemin, S. (2016). Limits to Adaptation in Partially Selfing Species. Genetics, 203(2), 959-+. https://doi.org/10.1534/genetics.116.188821

Pebesma, E., Mailund, T. & Hiebert, J. (2016). Measurement units in R. The R Journal, 8(2), 486-494. https://doi.org/10.32614/rj-2016-061

Nielsen, M. M., Tataru, P., Madsen, T., Hobolth, A. & Pedersen, J. S. (2016). Motif discovery in ranked lists of sequences. (pp. 1-4). http://biorxiv.org/content/biorxiv/suppl/2016/01/11/035956.DC2/035956-1.pdf

Athanasiadis, G., Cheng, J. Y., Vilhjálmsson, B. J., Jørgensen, F. G., Als, T. D., Le Hellard, S., Espeseth, T., Sullivan, P. F., Hultman, C. M., Kjærgaard, P. C., Schierup, M. H. & Mailund, T. (2016). Nationwide Genomic Study in Denmark Reveals Remarkable Population Homogeneity. Genetics, 204(2), 711-722. https://doi.org/10.1534/genetics.116.189241

Christiansen, F. B. (2016). Naturlig selektion. In K. Finster, T. Wang, F. Borchsenius & F. B. Christiansen (Eds.), Evolutionsbiologiske milepæle (pp. 20-39). Aarhus Universitetsforlag.

Jimenez Mena, B., Tataru, P., Brøndum, R. F., Sahana, G., Guldbrandtsen, B. & Bataillon, T. (2016). One size fits all? Direct evidence for the heterogeneity of genetic drift throughout the genome. Biology Letters, 12(7), Article 20160426. https://doi.org/10.1098/rsbl.2016.0426

Hartfield, M. (2016). On the origin of asexual species by means of hybridization and drift. Molecular Ecology, 25(14), 3264-3265. https://doi.org/10.1111/mec.13713

Lamy, P., Nordentoft, I. K., Birkenkamp-Demtröder, K., Thomsen, M. B. H., Villesen, P., Vang, S., Hedegaard, J., Borre, M., Jensen, J. B., Ørntoft, T. F. & Andersen, L. D. (2016). Paired exome analysis reveals clonal evolution and potential therapeutic targets in urothelial carcinoma. Cancer Research, 76(19), 5894-5906. https://doi.org/10.1158/0008-5472.CAN-16-0436

Nielsen, A. L.-L., Olsen, L. C., Saetrom, P., Drabløs, F., Besenbacher, S., Steenberg, L. R., Johansen, C. & Iversen, L. (2016). Pathway Analysis of Skin from Psoriasis Patients after Adalimumab Treatment Reveals New Early Events in the Anti-Inflammatory Mechanism of Anti-TNF-α. PLoS One, 11(12), e0167437. Article e0167437. https://doi.org/10.1371/journal.pone.0167437

Jimenez Mena, B., Schad, K., Hanna, N. & Lacy, R. C. (2016). Pedigree analysis for the genetic management of group-living species. Ecology and Evolution, 6(10), 3067-3078. https://doi.org/10.1002/ece3.1831

Świtnicki, M. P., Rasmussen, M. J., Madsen, T., Sørensen, K. D. & Pedersen, J. S. (2016). PINCAGE: Probabilistic integration of cancer genomics data for perturbed gene identification and sample classification. Bioinformatics, 32(9), 1353-1365. https://doi.org/10.1093/bioinformatics/btv758

Höglund, J., Sørensen, M. T., Larsen, T., Foldager, L., Ferris, C., Bell, M., Carter, F., Santoro, A., Crowe, M. & Ingvartsen, K. L. (2016). Potential for novel metabolite measurements in milk as biomarker phenotypes for dairy traits. In Book of abstracts of the 67th Annual Meeting of the European Federation of Animal Science (pp. 299). Wageningen Academic Publishers, The Netherlands. https://doi.org/10.3920/978-90-8686-830-8

Aschard, H., Vilhjálmsson, B. J., Joshi, A. D., Price, A. L. & Kraft, P. (2016). Response to Day et al. American Journal of Human Genetics, 98(2), 394-5. https://doi.org/10.1016/j.ajhg.2015.12.020

Hauberg, M. E., Holm-Nielsen, M. H., Mattheisen, M., Askou, A. L., Grove, J., Børglum, A. D. & Corydon, T. J. (2016). Schizophrenia risk variants affecting microRNA function and site-specific regulation of NT5C2 by miR-206. European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology, 26(9), 1522-6. https://doi.org/10.1016/j.euroneuro.2016.06.014

Munch, K., Nam, K., Schierup, M. H. & Mailund, T. (2016). Selective sweeps across twenty millions years of primate evolution. Molecular Biology and Evolution, 33(12), 3065-3074. https://doi.org/10.1093/molbev/msw199

Athanasiadis, G., Jorgensen, F. G., Cheng, J. Y., Kjaergaard, P. C., Schierup, M. H. & Mailund, T. (2016). Spitting for Science: Danish High School Students Commit to a Large-Scale Self-Reported Genetic Study. PLoS One, 11(8), Article e0161822. https://doi.org/10.1371/journal.pone.0161822

Nielsen, L. S., Villesen, P. & Lindholst, C. (2016). Stability of cocaine impurity profiles during 12 months of storage. Forensic Science International, 264, 56-62. https://doi.org/10.1016/j.forsciint.2016.03.012

Malolepszy, A., Mun, T., Sandal, N., Gupta, V., Dubin, M., Urbanski, D. F., Shah, N., Bachmann, A., Fukai, E., Hirakawa, H., Tabata, S., Nadzieja, M., Markmann, K., Su, J., Umehara, Y., Soyano, T., Miyahara, A., Sato, S., Hayashi, M. ... Andersen, S. U. (2016). The LORE1 insertion mutant resource. The Plant Journal, 88(2), 306-317. https://doi.org/10.1111/tpj.13243

Hobolth, A. & Siren, J. (2016). The multivariate Wright–Fisher process with mutation: Moment-based analysis and inference using a hierarchical Beta model. Theoretical Population Biology, 108, 36-50. https://doi.org/10.1016/j.tpb.2015.11.001

Stevison, L. S., Woerner, A. E., Kidd, J. M., Kelley, J. L., Veeramah, K. R., McManus, K. F., Bustamante, C. D., Hammer, M. F., Wall, J. D., Great Ape Genome Project & Schierup, M. H. (2016). The Time Scale of Recombination Rate Evolution in Great Apes. Molecular Biology and Evolution, 33(4), 928-945. https://doi.org/10.1093/molbev/msv331

Rajkumar, A. P., Christensen, J. H., Mattheisen, M., Jacobsen, I., Bache, I., Pallesen, J., Grove, J., Qvist, P., Mcquillin, A., Gurling, H. M., Tümer, Z., Mors, O. & Børglum, A. D. (2015). Analysis of t(9;17)(q33.2;q25.3) chromosomal breakpoint regions and genetic association reveals novel candidate genes for bipolar disorder. Bipolar Disorders (English Edition, Online), 17(2), 205-211. https://doi.org/10.1111/bdi.12239

Displaying results 601 to 650 out of 1390

Revised 13.01.2026

Palle Villesen