Privé, F., Albiñana, C., Arbel, J., Pasaniuc, B.
& Vilhjálmsson, B. J. (2023).
Inferring disease architecture and predictive ability with LDpred2-auto.
American Journal of Human Genetics,
110(12), 2042-2055.
https://doi.org/10.1016/j.ajhg.2023.10.010
Cheng, Z., Little, M. W., Ferris, C., Takeda, H.
, Ingvartsen, K. L., Crowe, M. A., Wathes, D. C. & GplusE Consortium (2023).
Influence of the concentrate inclusion level in a grass silage-based diet on hepatic transcriptomic profiles in Holstein-Friesian dairy cows in early lactation.
Journal of Dairy Science,
106(8), 5805-5824.
https://doi.org/10.3168/jds.2022-22860
Brikell, I., Wimberley, T., Albiñana, C., Vilhjálmsson, B. J., Agerbo, E., Børglum, A. D., Demontis, D., Schork, A. J., LaBianca, S., Werge, T., Hougaard, D. M., Nordentoft, M.
, Mors, O., Mortensen, P. B., Petersen, L. V. & Dalsgaard, S. (2023).
Interplay of ADHD Polygenic Liability With Birth-Related, Somatic, and Psychosocial Factors in ADHD: A Nationwide Study.
The American Journal of Psychiatry (Spanish Edition),
180(1), 73-88.
https://doi.org/10.1176/appi.ajp.21111105
Lassen, J. K., Wang, T., Nielsen, K. L., Hasselstrøm, J. B., Johannsen, M. & Villesen, P. (2023).
Large-Scale metabolomics: Predicting biological age using 10,133 routine untargeted LC–MS measurements.
Aging Cell,
22(5), Article e13813.
https://doi.org/10.1111/acel.13813
Albiñana, C., Zhu, Z., Schork, A. J., Ingason, A., Aschard, H.
, Brikell, I., Bulik, C. M.
, Petersen, L. V., Agerbo, E., Grove, J., Nordentoft, M., Hougaard, D. M., Werge, T.
, Børglum, A. D., Mortensen, P. B., McGrath, J. J., Neale, B. M.
, Privé, F. & Vilhjálmsson, B. J. (2023).
Multi-PGS enhances polygenic prediction by combining 937 polygenic scores.
Nature Communications,
14(1), Article 4702.
https://doi.org/10.1038/s41467-023-40330-w
Lindgren, L. H., Thomsen, T., de Thurah, A., Aadahl, M., Hetland, M. L.
, Kristensen, S. D. & Esbensen, B. A. (2023).
Newly diagnosed with inflammatory arthritis (NISMA)–development of a complex self-management intervention.
BMC Health Services Research,
23(1), Article 123.
https://doi.org/10.1186/s12913-022-09007-w
Jeppesen, L. D., Lildballe, D. L., Hatt, L., Hedegaard, J., Singh, R., Toft, C. L. F., Schelde, P.
, Pedersen, A. S., Knudsen, M. & Vogel, I. (2023).
Noninvasive Prenatal Screening for Cystic Fibrosis Using Circulating Trophoblasts: Detection of the 50 Most Common Disease-Causing Variants.
Obstetrical and Gynecological Survey,
78(7), 393-395.
https://doi.org/10.1097/01.ogx.0000947140.57660.b6
Sørensen, S. G., Shrikhande, A.
, Poulsgaard, G. A., Christensen, M. H., Bertl, J., Laursen, B. E., Hoffmann, E. R.
& Pedersen, J. S. (2023).
Pan-cancer association of DNA repair deficiencies with whole-genome mutational patterns.
eLife,
12, Article e81224.
https://doi.org/10.7554/elife.81224
Rivas-González, I., Rousselle, M., Li, F., Zhou, L.
, Dutheil, J. Y., Munch, K., Shao, Y., Wu, D.
, Schierup, M. H. & Zhang, G. (2023).
Pervasive incomplete lineage sorting illuminates speciation and selection in primates.
Science,
380(6648), eabn4409. Article eabn4409.
https://doi.org/10.1126/science.abn4409
Rolland, T., Cliquet, F., Anney, R. J. L., Moreau, C., Traut, N., Mathieu, A., Huguet, G.
, Duan, J., Warrier, V., Portalier, S., Dry, L., Leblond, C. S., Douard, E., Amsellem, F., Malesys, S., Maruani, A., Toro, R.
, Børglum, A. D., Grove, J. ... Bourgeron, T. (2023).
Phenotypic effects of genetic variants associated with autism.
Nature Medicine,
29(7), 1671-1680.
https://doi.org/10.1038/s41591-023-02408-2
Shao, Y., Zhou, L., Li, F., Zhao, L., Zhang, B. L., Shao, F., Chen, J. W., Chen, C. Y., Bi, X., Zhuang, X. L., Zhu, H. L., Hu, J., Sun, Z., Li, X., Wang, D.
, Rivas-González, I., Wang, S., Wang, Y. M., Chen, W. ... Wu, D. D. (2023).
Phylogenomic analyses provide insights into primate evolution.
Science (New York, N.Y.),
380(6648), 913-924.
https://doi.org/10.1126/science.abn6919
Musliner, K. L., Andersen, K. K.
, Agerbo, E., Albiñana, C., Vilhjalmsson, B. J., Rajagopal, V. M., Bybjerg-Grauholm, J., Bækved-Hansen, M.
, Pedersen, C. B., Pedersen, M. G., Munk-Olsen, T., Benros, M. E.
, Als, T. D., Grove, J., Werge, T.
, Børglum, A. D., Hougaard, D. M.
, Mors, O., Nordentoft, M. ... Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium (2023).
Polygenic liability, stressful life events and risk for secondary-treated depression in early life: a nationwide register-based case-cohort study.
Psychological Medicine,
53(1), 217-226.
https://doi.org/10.1017/S0033291721001410
Wang, X., Walker, A., Revez, J. A., Ni, G., Adams, M. J., McIntosh, A. M. & Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium (2023).
Polygenic risk prediction: why and when out-of-sample prediction R2 can exceed SNP-based heritability.
American Journal of Human Genetics,
110(7), 1207-1215.
https://doi.org/10.1016/j.ajhg.2023.06.006
Ding, Y., Hou, K., Xu, Z., Pimplaskar, A., Petter, E., Boulier, K.
, Privé, F., Vilhjálmsson, B. J., Olde Loohuis, L. M. & Pasaniuc, B. (2023).
Polygenic scoring accuracy varies across the genetic ancestry continuum.
Nature,
618, 774-781.
https://doi.org/10.1038/s41586-023-06079-4
Chalmer, M. A., Kogelman, L. J. A., Ullum, H.
, Sørensen, E., Didriksen, M.
, Mikkelsen, S., Dinh, K. M., Brodersen, T.
, Nielsen, K. R., Bruun, M. T., Banasik, K., Brunak, S.
, Erikstrup, C., Pedersen, O. B., Ostrowski, S. R., Olesen, J.
& Hansen, T. F. (2023).
Population-Based Characterization of Menstrual Migraine and Proposed Diagnostic Criteria.
JAMA network open,
6(5), e2313235.
https://doi.org/10.1001/jamanetworkopen.2023.13235
Cheng, Z., McLaughlin, D. L., Little, M. W., Ferris, C., Salavati, M.
, Ingvartsen, K. L., Crowe, M. A., Wathes, D. C. & GplusE Consortium (2023).
Proportion of Concentrate in the Diet of Early Lactation Dairy Cows Has Contrasting Effects on Circulating Leukocyte Global Transcriptomic Profiles, Health and Fertility According to Parity.
International Journal of Molecular Sciences ,
24(1), Article 39.
https://doi.org/10.3390/ijms24010039
Kringelbach, T., Højgaard, M., Rohrberg, K., Spanggaard, I.
, Laursen, B. E., Ladekarl, M., Haslund, C. A., Harsløf, L., Belcaid, L., Gehl, J.
, Søndergaard, L., Eefsen, R. L., Hansen, K. H., Kodahl, A. R.
, Jensen, L. H., Holt, M. I., Oellegaard, T. H., Yde, C. W., Ahlborn, L. B.
& Lassen, U. (2023).
ProTarget: a Danish Nationwide Clinical Trial on Targeted Cancer Treatment based on genomic profiling – a national, phase 2, prospective, multi-drug, non-randomized, open-label basket trial.
BMC Cancer,
23(1), Article 182.
https://doi.org/10.1186/s12885-023-10632-9
Chatwin, H., Holde, K., Yilmaz, Z., Larsen, J. T., Albiñana, C., Vilhjálmsson, B. J., Mortensen, P. B., Thornton, L. M., Bulik, C. M.
& Petersen, L. V. (2023).
Risk factors for anorexia nervosa: A population-based investigation of sex differences in polygenic risk and early life exposures.
International Journal of Eating Disorders,
56(9), 1703-1716.
https://doi.org/10.1002/eat.23997
Poulsgaard, G. A., Sørensen, S. G., Juul, R. I., Nielsen, M. M. & Pedersen, J. S. (2023).
Sequence dependencies and mutation rates of localized mutational processes in cancer.
Genome Medicine,
15(1), Article 63.
https://doi.org/10.1186/s13073-023-01217-z
Frank, M., Fechete, L. I., Tedeschi, F., Nadzieja, M., Nørgaard, M. M. M., Montiel, J., Andersen, K. R., Schierup, M. H., Reid, D. & Andersen, S. U. (2023).
Single-cell analysis identifies genes facilitating rhizobium infection in Lotus japonicus.
Nature Communications,
14(1), Article 7171.
https://doi.org/10.1038/s41467-023-42911-1
Sokač, M., Kjær, A., Dyrskjøt, L., Haibe-Kains, B., Jwl Aerts, H.
& Birkbak, N. J. (2023).
Spatial transformation of multi-omics data unlocks novel insights into cancer biology.
eLife,
12, Article RP87133.
https://doi.org/10.7554/eLife.87133
Winters, J. F. M., Kobek-Kjeldager, C., Foldager, L., Tecles, F.
& Pedersen, L. J. (2023).
Stress responses in pigs postweaning: Effect of heavier hybrid and weaning intact litters.
Applied Animal Behaviour Science,
269, Article 106106.
https://doi.org/10.1016/j.applanim.2023.106106
Borbye-Lorenzen, N.
, Zhu, Z., Agerbo, E., Albiñana, C., Benros, M. E., Bian, B.
, Børglum, A. D., Bulik, C. M.
, Debost, J.-C. P. G., Grove, J., Hougaard, D. M., McRae, A. F.
, Mors, O., Mortensen, P. B., Musliner, K. L., Nordentoft, M.
, Petersen, L. V., Privé, F., Sidorenko, J.
... McGrath, J. J. (2023).
The correlates of neonatal complement component 3 and 4 protein concentrations with a focus on psychiatric and autoimmune disorders.
Cell Genomics,
3(12), 100457. Article 100457.
https://doi.org/10.1016/j.xgen.2023.100457
Frankell, A. M., Dietzen, M., Al Bakir, M., Lim, E. L., Karasaki, T., Ward, S., Veeriah, S., Colliver, E., Huebner, A., Bunkum, A., Hill, M. S., Grigoriadis, K., Moore, D. A., Black, J. R. M., Liu, W. K., Thol, K., Pich, O., Watkins, T. B. K., Naceur-Lombardelli, C. ... TRACERx Consortium (2023).
The evolution of lung cancer and impact of subclonal selection in TRACERx.
Nature,
616(7957), 525-533.
https://doi.org/10.1038/s41586-023-05783-5
Gao, H., Hamp, T., Ede, J., Schraiber, J. G., McRae, J., Singer-Berk, M., Yang, Y., Dietrich, A. S. D., Fiziev, P. P., Kuderna, L. F. K., Sundaram, L., Wu, Y., Adhikari, A., Field, Y., Chen, C., Batzoglou, S., Aguet, F., Lemire, G., Reimers, R. ... Farh, K. K. H. (2023).
The landscape of tolerated genetic variation in humans and primates.
Science (New York, N.Y.),
380(6648), Article abn8197.
https://doi.org/10.1126/science.abn8197
Murat, F., Mbengue, N.
, Winge, S. B., Trefzer, T., Leushkin, E., Sepp, M., Cardoso-Moreira, M., Schmidt, J., Schneider, C., Mößinger, K., Brüning, T., Lamanna, F.
, Riera Belles, M., Conrad, C., Kondova, I., Bontrop, R., Behr, R., Khaitovich, P., Pääbo, S. ... Kaessmann, H. (2023).
The molecular evolution of spermatogenesis across mammals.
Nature,
613(7943), 308-316.
https://doi.org/10.1038/s41586-022-05547-7
Ahrenfeldt, J., Christensen, D. S., Østergaard, A. B.
, Kisistók, J., Sokač, M. & Birkbak, N. J. (2023).
The ratio of adaptive to innate immune cells differs between genders and associates with improved prognosis and response to immunotherapy.
PLOS ONE,
18(2 ), Article e0281375.
https://doi.org/10.1371/journal.pone.0281375
Abbosh, C., Frankell, A. M., Harrison, T.
, Kisistok, J., Garnett, A., Johnson, L., Veeriah, S., Moreau, M., Chesh, A., Chaunzwa, T. L., Weiss, J., Schroeder, M. R., Ward, S., Grigoriadis, K., Shahpurwalla, A., Litchfield, K., Puttick, C., Biswas, D., Karasaki, T. ... TRACERx Consortium (2023).
Tracking early lung cancer metastatic dissemination in TRACERx using ctDNA.
Nature,
616(7957), 553-562.
https://doi.org/10.1038/s41586-023-05776-4
Chen, Y., Atashi, H., Mota, R. R., Grelet, C., Vanderick, S., Hu, H., GplusE Consortium & Gengler, N. (2023).
Validating genomic prediction for nitrogen efficiency index and its composition traits of Holstein cows in early lactation.
Journal of Animal Breeding and Genetics (Online),
140(6), 695-706.
https://doi.org/10.1111/jbg.12819
Heinz, J. L., Swagemakers, S. M. A., von Hofsten, J., Helleberg, M.
, Thomsen, M. M., De Keukeleere, K., de Boer, J. H.
, Ilginis, T., Verjans, G. M. G. M., van Hagen, P. M., van der Spek, P. J.
& Mogensen, T. H. (2023).
Whole exome sequencing of patients with varicella-zoster virus and herpes simplex virus induced acute retinal necrosis reveals rare disease-associated genetic variants.
Frontiers in Molecular Neuroscience,
16, Article 1253040.
https://doi.org/10.3389/fnmol.2023.1253040
Bergman, J., Pedersen, R., Lundgren, E. J., Lemoine, R. T., Monsarrat, S., Pearce, E. A., Schierup, M. H. & Svenning, J. C. (2023).
Worldwide Late Pleistocene and Early Holocene population declines in extant megafauna are associated with Homo sapiens expansion rather than climate change.
Nature Communications,
14(1), Article 7679.
https://doi.org/10.1038/s41467-023-43426-5
Pedersen, E. M., Agerbo, E., Plana-Ripoll, O., Grove, J., Dreier, J. W., Musliner, K. L., Bækvad-Hansen, M., Athanasiadis, G., Schork, A., Bybjerg-Grauholm, J., Hougaard, D. M., Werge, T., Nordentoft, M.
, Mors, O., Dalsgaard, S., Christensen, J., Børglum, A. D., Mortensen, P. B., McGrath, J. J. ... Vilhjálmsson, B. J. (2022).
Accounting for age of onset and family history improves power in genome-wide association studies.
American Journal of Human Genetics,
109(3), 417-432.
https://doi.org/10.1016/j.ajhg.2022.01.009
Antaki, D., Guevara, J., Maihofer, A. X., Klein, M., Gujral, M.
, Grove, J., Carey, C. E., Hong, O., Arranz, M. J., Hervas, A., Corsello, C., Vaux, K. K., Muotri, A. R., Iakoucheva, L. M., Courchesne, E., Pierce, K., Gleeson, J. G., Robinson, E. B., Nievergelt, C. M. & Sebat, J. (2022).
A phenotypic spectrum of autism is attributable to the combined effects of rare variants, polygenic risk and sex.
Nature Genetics,
54(9), 1284-1292.
https://doi.org/10.1038/s41588-022-01064-5
Wang, T., Nielsen, K. L., Frisch, K., Lassen, J. K., Nielsen, C. B., Andersen, C. U., Villesen, P., Andreasen, M. F., Hasselstrøm, J. B. & Johannsen, M. (2022).
A Retrospective Metabolomics Analysis of Gamma-Hydroxybutyrate in Humans: New Potential Markers and Changes in Metabolism Related to GHB Consumption.
Frontiers in Pharmacology,
13, Article 816376.
https://doi.org/10.3389/fphar.2022.816376
Yengo, L., Vedantam, S., Marouli, E., Sidorenko, J., Bartell, E., Sakaue, S., Graff, M., Eliasen, A. U., Jiang, Y., Raghavan, S., Miao, J., Arias, J. D., Graham, S. E., Mukamel, R. E., Spracklen, C. N., Yin, X., Chen, S.-H., Ferreira, T., Highland, H. H. ... Understanding Society Scientific Group (2022).
A saturated map of common genetic variants associated with human height.
Nature,
610(7933), 704–712.
https://doi.org/10.1038/s41586-022-05275-y
Wurtz, K. E., Tahamtani, F. M.
, Foldager, L., Thodberg, K. & Riber, A. B. (2022).
Association of range use, individual behavior, and welfare indicators of two laying hen hybrids housed under organic conditions. In M. Kjosevski, S. Waiblinger & V. Ilieski (Eds.),
Proceedings of the 55th Congress of the ISAE: Animal Behaviour and Beyond (pp. 56-56).
https://www.applied-ethology.org/res/ISAE_2022_PROCEEDINGS_e-version.pdf