Software
This page contains a list of actively maintained software, that has been developed at BiRC. If you have any questions regarding a particular piece of software/wwwservice please contact the person responsible (listed to the right of each software description).
If you are employed at BiRC and want you software listed on this page, please contact Christian N. S. Pedersen.
WWW Services | ||
| FaBox | FASTA online toolbox | Palle Villesen Fredsted |
| Pfold | RNA 2nd structure prediction from a multiple alignment of RNA sequences. | Zsuzsanna Sükösd |
| PumpClassifier | P-type ATPase sequence classifier and database. | Christian N. S. Pedersen |
| RecPars | Phylogenetic analysis using a parsimony analysis that takes recombination events into account. | Mikkel Heide Schierup |
| RetroSearch | Database of ORF annotated human endogenous retroviruses. | Palle Villesen Fredsted |
Downloadable Software | ||
| Blossoc | Block-Association Mapping. | Thomas Mailund |
| CoAnnealing | Simulated Annealing Search for Coalescent Trees. | Thomas Mailund |
| CoaSim | Simulating the coalescent process. | Thomas Mailund |
| GeneRecon | A coalescent based tool for fine-scale association mapping. | Thomas Mailund |
| HapCluster | HapCluster is a software package for association mapping. | Thomas Mailund |
| PPfold | RNA 2nd structure prediction from a multiple alignment of RNA sequences. PPfold is an efficient implementation of the service Pfold available above. | Zsuzsanna Sükösd |
| QDist | Computation of the quartet distance between evolutationary trees. | Christian N. S. Pedersen |
| QuickJoin | A tool for fast canonical neighbor-joining tree construction but use RapidNJ instead. | Thomas Mailund |
| RapidNJ | A tool for fast canonical neighbor-joining tree construction. | Martin Simonsen |
| SplitDist | Split-Dist calculates the number of splits (edges) that differs for two trees. | Thomas Mailund |