2004

• Szalay, P. G., Thøgersen, L. S., Olsen, J., Kállay, M., Gauss, J., 2004, "Equilibrium Geometry of the Ethynyl (CCH) Radical", Journal of Physical Chemistry Part A: Molecules, Spectroscopy, Kinetics, Environment and General Theory, vol. 108, s. 3030-3034. Journal article
• Rivas, S., Rougon-Cardoso, A., Smoker, M., Schauser, L., Yoshioka, H., Jones, J., 2004, "CITRX thioredoxin interacts with the tomato Cf-9 resistance protein and negatively regulates defence", The EMBO Journal, vol. 23, s. 2156-2165. Journal article
• Rafnar, T., Thorlacius, S., Steingrimsson, E., Schierup, M., Madsen, J., Calian, V., Eldon, B., Jonsson, T., Hein, J., Thorgeirsson, S., 2004, "The Icelandic Cancer Project--a population-wide approach to studying cancer", Nat Rev Cancer Jun, vol. 4, nr. 6, s. 488-492. Journal article
• Pedersen, J., Forsberg, R., Meyer, I., Hein, J., 2004, "An evolutionary model for protein-coding regions with conserved RNA structure", Mol Biol Evol. Oct;21, vol. 10, s. 1913-1922. Journal article
• Pedersen, J., Meyer, I., Forsberg, R., Simmonds, P., nullJA, H., 2004, "Comparative method for finding and folding RNA secondary structures within protein-coding regions", Nucleic Acids Res Sep 24, vol. 32, nr. 16, s. 4925-4936. Journal article
• Munkacsi, A., Pan, J., Villesen, P., Mueller, U., Blackwell, M., McLaughlin, D., 2004, "Convergent coevolution in the domestication of coral mushrooms by fungus-growing ants", Proc r soc lond b biol sci, vol. 271, nr. (1550), s. 1777-1782. Journal article
• Munkacsi, A. B., Pan, J. J., Villesen, P., Mueller, U. G., Blackwell, M., McLaughlin, D. J., 2004, "Convergent coevolution in the domestication of coral mushrooms by fungus-growing ants", Royal Society of London. Proceedings. Biological Sciences, vol. 271, nr. 1550, s. 1777-1782. Journal article
• Munkacsi, A. B., Nees, J. P., Villesen, P., Mueller, U. G., Blackwell, M., McLaughlin, D. J., 7.9.2004, "Convergent coevolution in the domestication of coral mushrooms by fungus-growing ants", Royal Society of London. Proceedings. Biological Sciences, vol. 271, nr. 1550, s. 1777-82. Journal article
• McKhann, H. I., Camilleri, C., Bérard, A., Bataillon, T., David, J. L., Reboud, X., Le Corre, V., Caloustian, C., Gut, I. G., Brunel, D., 1.4.2004, "Nested core collections maximizing genetic diversity in Arabidopsis thaliana", Plant Journal, vol. 38, nr. 1, s. 193-202. Journal article
• Mailund, , Pedersen, C. N. S., 2004, "QDist—Quartet Distance Between Evolutionary Trees", Bioinformatics, vol. 20, nr. 10, s. 1636-1637. Journal article
• Mailund, , Pedersen, C. N. S., 2004, "QuickJoin—Fast Neighbour-Joining Tree Reconstruction", Bioinformatics, vol. 20, nr. 17, s. 3261-3262. Journal article
• Mailund, T., Pedersen, C., 2004, "QDist - Quartet Distance between Evolutionary Trees", Bioinformatics, vol. 20, nr. 10, s. 1636-1637. Journal article
• Mailund, T., Pedersen, C., 2004, "Qdist--quartet distance between evolutionary trees", Bioinformatics, vol. 20, s. 1636-1637. Journal article
• Mailund, T., Pedersen, C., 2004, "QuickJoin -- Fast neighbor-joining tree reconstruction", Bioinformatics, vol. 20, s. 3261-3262. Journal article
• Jensen, E., Hobolth, A., Frandsen, J., Vestergaard-Poulsen, P., Østergaard, L., 2004, "Bayesian regularization of diffusion tensor images". Report
• Hein, J., Schierup, M. H., Wiuf, C., 2004, "Gene genealogies, variation and evolution". Book
• Hannila, M., Jensen, E., Hobolth, A., Nyengaard, J., 2004, "Spatial particle shape modeling from planar central sections - a case study", Journal of Microscopy, vol. 215, s. 183-190. Journal article
• Goldringer, I., Bataillon, T., 1.9.2004, "On the distribution of temporal variations in allele frequency: consequences for the estimation of effective population size and the detection of loci undergoing selection", Genetics, vol. 168, nr. 1, s. 563-8. Journal article
• Fredsted, T., Villesen, P., 2004, "Fast, reliable sexing of prosimian dna", American Journal of Primatology, vol. 64, s. 345-350. Journal article
• Fredsted, T., Villesen, P., 2004, "Fast, reliable sexing of prosimian DNA", American Journal of Primatology, vol. 64, s. 345-350. Journal article
• Einer-Jensen, K., Ahrens, P., Forsberg, R., Lorenzen, N., 2004, "Evolution of the fish rhabdovirus viral haemorrhagic septicaemia virus", Journal of General Virology, vol. 85, nr. 5, s. 1167-1179. Journal article
• Christiansen, F. B., 2004, "Lecture Notes in Population Genetics.". Compendium/lecture notes
• Christensen, O., Cassiani, G., Diggle, P., Ribeiro, P., Andreotti, G., 2004, "Statistical estimation of the relative efficiency of natural attenuation mechanisms in contaminated aquifers", Stochastic environmental research and risk assessment (SERRA), vol. 18, s. 339-350. Journal article
• Brown, P., Christensen, O., Clough, H., Diggle, P., Hart, C., Hazel, S., Kemp, R., Leatherbarrow, A., Moore, A., Sutherst, J., Turner, J., Williams, N., Wright, E., French, N., 2004, "The frequency and spatial distribution of environmental campylobacter spp", Applied Environmental Microbiology, vol. 70, s. 6501-6511. Journal article
• Boni, M., Gog, J., Andreasen, V., Christiansen, F., 2004, "Influenza drift and epidemic size:", Theoretical Population Biology, vol. 65, s. 179-191. Journal article
• Billington, J., Gallasch, G. E., Kristensen, L. M., Mailund, , 2004, "Exploiting Equivalence Reduction and the Sweep-Line Method for Detecting Terminal States", I E E E Transactions on Systems, Man and Cybernetics, Part A: Systems & Humans, vol. 34, nr. 1, s. 23-37. Journal article
• Billington, J., Gallasch, G., LM Kristensen, L., Mailund, T., 2004, "Exploiting Equivalence Reduction and the Sweep-Line Method for Detecting Terminal States", I E E E Transactions on Systems, Man and Cybernetics, Part A: Systems & Humans, vol. 34, nr. 1, s. 23-37. Journal article
• Besenbacher, S., Mailund, T., Westh-Nielsen, L., Pedersen, C. S., 2004, "RBT -- A tool for building refined Buneman trees", Bioinformatics, vol. doi:10.1093/bti195, s. in press. Journal article
• Bechsgaard, J., Bataillon, T., Schierup, M. H., 2004, "Uneven segregation of sporophytic self-incompatibility alleles in Arabidopsis lyrata", J. Evol. Biol., vol. 17, s. 554-561. Journal article
• Bechsgaard, J., Bataillon, T., Schierup, M., 2004, "Uneven segregation of sporophytic self-incompatibility alleles in arabidopsis lyrata", Journal of Evolutionary Biology, vol. 17, nr. 3, s. 554-561. Journal article
• Aagaard, L., Villesen, P., 2004, "Din indre virus", Aktuel Naturvidenskab, vol. 6, s. 10-13. Journal article
• Aagaard, L., Villesen, P., 2004, "Din indre virus", Aktuel Naturvidenskab, nr. 6. Journal article

2003

• Wiuf, C., Laidlaw, Z., Stumpf, M., 2003, "Some notes on the combinatorial properties of haplotype tagging", Math. Biosci., vol. 185, s. 205-216. Journal article
• Wiuf, C., Posada, D., 2003, "A coalescent model of hotspot recombination. Genetics 164: 407-417", Genetics, vol. 164, s. 407-417. Journal article
• Wiuf, C., 2003, "Inferring population history from geneaological trees", J Math Biol, vol. 46, s. 241-264. Journal article
• Willerslev, E., Hansen, A., Binladen, J., Brand, T., Gilbert, M., Shapiro, B., Bunce, M., Wiuf, C., Gilichinsky, D., Cooper, A., 2003, "Diverse plant and animal genetic records from holocene and pleistocene sediments.", Kexue (Shanghai), vol. 300, s. 791-795. Journal article
• Villesen, P., Boomsma, J., 2003, "Patterns of male parentage in the fungus-growing ants", Behavioral Ecology and Sociobiology, vol. 53, nr. 4, s. 246-253. Journal article
• Richman, A., Herrera, L., Nash, D., Schierup, M. H., 2003, "Relative roles of mutation and recombination in generating allelic polymorphism at an MHC class II locus in Peromyscus maniculatus", Genetetical Research, Camb, vol. 82, s. 89-99. Journal article
• Posada, D., Wiuf, C., 2003, "Simulating haplotype blocks in the human genome", Bioinformatics, vol. 19, nr. 2, s. 289-290. Journal article
• Mable, B., Schierup, M. H., Charlesworth, D., 2003, "Estimating the number, frequency, and dominance of S-alleles in a natural population of Arabidopsis lyrata (Brassicaceae) with sporophytic control of self-incompatibility", Iden, vol. 90, s. 422-431. Journal article
• Glémin, S., Ronfort, J., Bataillon, T., 1.12.2003, "Patterns of inbreeding depression and architecture of the load in subdivided populations", Genetics, vol. 165, nr. 4, s. 2193-212. Journal article
• Forsberg, R., Christiansen, F., 2003, "A codon-based model of host-specific selection in parasites, with an application to the influenza A virus", Mol. Biol. Evol., vol. 20, nr. 8, s. 1252-1259. Journal article
• Eskildsen, S., Justesen, J., Schierup, M. H., Hartmann, R., 2003, "Characterization of the 2′-5′-oligoadenylate synthetase ubiquitin-like family", Nucl. Acids Res., vol. 31, s. 3166-3173. Journal article
• Eskildsen, S., Justesen, J., Schierup, M. H., Hartmann, R., 2003, "Characterization of the 2'-5'-oligoadenylate synthetase ubiquitin-like family", Nucleic Acids Research, vol. 31, nr. 12, s. 3166-3173. Journal article
• Christiansen, F. B., 2003, "Lecture Notes in Population Genetics.". Compendium/lecture notes
• Charlesworth, D., Bartolomé, C., Schierup, M. H., Mable, B., 2003, "Haplotype structure of the stigmatic self-incompatibility gene in natural populations of Arabidopsis lyrata", Mol. Biol. Evol., vol. 20, nr. 11, s. 1741-1753. Journal article
• Charlesworth, D., Mable, B., Schierup, M., Bartolomé, C., Awadalla, P., Schierup, M. H., 2003, "Diversity and linkage of genes in the self-incompatibility gene family in Arabidopsis lyrata", Genetics, vol. 164, s. 1519-1535. Journal article
• Brodal, G. S., Fagerberg, R., Pedersen, C. N. S., 2003, "Computing the Quartet Distance Between Evolutionary Trees in Time O(n log n)", Algorithmica, vol. 38, nr. 2, s. 377-395. Journal article
• Borisov, A. Y., Madsen, L. H., Tsyganov, V. E., Umehara, Y., Voroshilova, V. A., Batagov, A. O., Sandal, N. N., Mortensen, A., Schauser, L., Ellis, N., Tikhonovich, I. A., Stougaard, J., 2003, "The Sym35 gene required for root nodule development in Pisum sativum is an ortholog of Nin from Lotus japonicus", Plant Physiology, vol. 131, s. 1009-1017. Journal article

2002

• Wiuf, C., 2002, "On the minimum number of topologies explaining a sample of DNA sequences", Theor Pop Biol, vol. 62, s. 357-363. Journal article