Publications

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Dahl-Pedersen, K., Foldager, L., Herskin, M. S., Houe, H. & Thomsen, P. T. (2018). Lameness scoring and assessment of fitness for transport in dairy cows: Agreement among and between farmers, veterinarians and livestock drivers. Research in Veterinary Science, 119, 162-166. https://doi.org/10.1016/j.rvsc.2018.06.017

Bjerg, J. T., Boschker, H. T. S., Larsen, S., Berry, D., Schmid, M., Millo, D., Tataru, P., Meysman, F. J. R., Wagner, M., Nielsen, L. P. & Schramm, A. (2018). Long-distance electron transport in individual, living cable bacteria. Proceedings of the National Academy of Sciences (PNAS), 115(22), 5786-5791. https://doi.org/10.1073/pnas.1800367115

Salvador-Martínez, I., Coronado-Zamora, M., Castellano, D., Barbadilla, A. & Salazar-Ciudad, I. (2018). Mapping selection within Drosophila melanogaster embryo's anatomy. Molecular Biology and Evolution, 35(1), 66-79. https://doi.org/10.1093/molbev/msx266

Gengler, N., Mineur, A., Vanderick, S., Hammami, H. & GplusE Consortium (2018). Milk mid-infrared spectra based biomarkers contributing to genetic improvement for udder health, fertility and longevity. In J. Bryant, M. Burke, R. Cook, B. Harris, C. Mosconi & B. Wickham (Eds.), Proceedings of the ICAR Conference (Vol. 23, pp. 221-227) https://www.icar.org/wp-content/uploads/2018/07/ICAR-Technical-Series-23-Auckland-2018-Proceedings.pdf

Birkenkamp-Demtröder, K., Christensen, E., Nordentoft, I. K., Knudsen, M., Taber, A., Høyer, S., Lamy, P., Agerbæk, M., Jensen, J. B. & Dyrskjøt, L. (2018). Monitoring treatment response and metastatic relapse in advanced bladder cancer by liquid biopsy analysis. European Urology, 73(4), 535-540. https://doi.org/10.1016/j.eururo.2017.09.011

Schumer, M., Xu, C., Powell, D. L., Durvasula, A., Skov, L., Holland, C., Blazier, J. C., Sankararaman, S., Andolfatto, P., Rosenthal, G. G. & Przeworski, M. (2018). Natural selection interacts with recombination to shape the evolution of hybrid genomes. Science, 360(6389), 656-660. https://doi.org/10.1126/science.aar3684

Castellano, D., James, J. & Eyre-Walker, A. (2018). Nearly Neutral Evolution across the Drosophila melanogaster Genome. Molecular Biology and Evolution, 35(11), 2685-2694. https://doi.org/10.1093/molbev/msy164

Waltoft, B. L. & Hobolth, A. (2018). Non-parametric estimation of population size changes from the site frequency spectrum. Statistical Applications in Genetics and Molecular Biology, 17(3), Article 20170061. https://doi.org/10.1515/sagmb-2017-0061

Rousselle, M., Mollion, M., Nabholz, B., Bataillon, T. & Galtier, N. (2018). Overestimation of the adaptive substitution rate in fluctuating populations. Biology Letters, 14(5), Article 20180055. https://doi.org/10.1098/rsbl.2018.0055

Hornshøj, H., Nielsen, M. M., Sinnott-Armstrong, N. A., Świtnicki, M. P., Juul, M., Madsen, T., Sallari, R., Kellis, M., Ørntoft, T., Hobolth, A. & Pedersen, J. S. (2018). Pan-cancer screen for mutations in non-coding elements with conservation and cancer specificity reveals correlations with expression and survival. npj Genomic Medicine, 3(1), 1. Article 40. https://doi.org/10.1038/s41525-017-0040-5

Mollion, M., Ehlers, B., Figuet, E., Santoni, S., Lenormand, T., Maurice, S., Galtier, N. & Bataillon, T. (2018). Patterns of genome-wide nucleotide diversity in the gynodioecious plant Thymus vulgaris are compatible with recent sweeps of cytoplasmic genes. Genome Biology and Evolution, 10(1), 239-248. https://doi.org/10.1093/gbe/evx272

Zheng, J., Richardson, T. G., Millard, L. A. C., Hemani, G., Elsworth, B. L., Raistrick, C. A., Vilhjalmsson, B., Neale, B. M., Haycock, P. C., Smith, G. D. & Gaunt, T. R. (2018). PhenoSpD: an integrated toolkit for phenotypic correlation estimation and multiple testing correction using GWAS summary statistics. GigaScience, 7(8), 1-10. https://doi.org/10.1093/gigascience/giy090

Ludvigsen, M., Bjerregård Pedersen, M., Lystlund Lauridsen, K., Svenstrup Poulsen, T., Hamilton-Dutoit, S. J., Besenbacher, S., Bendix, K., Møller, M. B., Nørgaard, P., d'Amore, F. & Honoré, B. (2018). Proteomic profiling identifies outcome-predictive markers in patients with peripheral T-cell lymphoma, not otherwise specified. Blood Advances, 2(19), 2533-2542. https://doi.org/10.1182/bloodadvances.2018019893

Nielsen, M. M., Tataru, P., Madsen, T., Hobolth, A. & Pedersen, J. S. (2018). Regmex: A statistical tool for exploring motifs in ranked sequence lists from genomics experiments. Algorithms for Molecular Biology, 13(1), Article 17. https://doi.org/10.1186/s13015-018-0135-2

Nielsen, L. S., Villesen, P. & Lindholst, C. (2018). Stability of amphetamine impurity profiles during 12 months of storage. Forensic Science International, 290, 129-136. https://doi.org/10.1016/j.forsciint.2018.06.039

Kongsted, H., Foldager, L. & Sørensen, J. T. (2018). Sygdomsproblemer hos økologiske grise og frilandsgrise. DCA - Nationalt Center for Fødevarer og Jordbrug. DCA rapport No. 128 http://web.agrsci.dk/djfpublikation/index.asp?action=show&id=1271

Thornton, L. M., Munn-Chernoff, M. A., Baker, J. H., Juréus, A., Parker, R., Henders, A. K., Larsen, J. T., Petersen, L., Watson, H. J., Yilmaz, Z., Kirk, K. M., Gordon, S., Leppä, V. M., Martin, F. C., Whiteman, D. C., Olsen, C. M., Werge, T. M., Pedersen, N. L., Kaye, W. ... Bulik, C. M. (2018). The anorexia nervosa genetics initiative (ANGI): Overview and methods. Contemporary Clinical Trials, 74, 61-69. https://doi.org/10.1016/j.cct.2018.09.015

Munch, D., Gupta, V., Bachmann, A., Busch, W., Kelly, S., Mun, T. & Andersen, S. U. (2018). The Brassicaceae family displays divergent, shoot-skewed NLR resistance gene expression. Plant Physiology, 176(2), 1598-1609. https://doi.org/10.1104/pp.17.01606

Fragata, I., Matuszewski, S., Schmitz, M. A., Bataillon, T., Jensen, J. D. & Bank, C. (2018). The fitness landscape of the codon space across environments. Heredity, 121(5), 422-437. https://doi.org/10.1038/s41437-018-0125-7

Pedersen, C. B., Bybjerg-Grauholm, J., Pedersen, M. G., Grove, J., Agerbo, E., Bækvad-Hansen, M., Poulsen, J. B., Hansen, C. S., McGrath, J. J., Als, T. D., Goldstein, J. I., Neale, B. M., Daly, M. J., Hougaard, D. M., Mors, O., Nordentoft, M., Børglum, A. D., Werge, T. & Mortensen, P. B. (2018). The iPSYCH2012 case-cohort sample: new directions for unravelling genetic and environmental architectures of severe mental disorders. Molecular Psychiatry, 23(1), 6–14. https://doi.org/10.1038/mp.2017.196

Kong, A., Thorleifsson, G., Frigge, M. L., Vilhjalmsson, B. J., Young, A. I., Thorgeirsson, T. E., Benonisdottir, S., Oddsson, A., Halldorsson, B. V., Masson, G., Gudbjartsson, D. F., Helgason, A., Bjornsdottir, G., Thorsteinsdottir, U. & Stefansson, K. (2018). The nature of nurture: Effects of parental genotypes. Science, 359(6374), 424-428. https://doi.org/10.1126/science.aan6877

Østergaard, S. D., Foldager, L., Mors, O., Bech, P. & Correll, C. U. (2018). The validity and sensitivity of PANSS-6 in treatment-resistant schizophrenia. Acta Psychiatrica Scandinavica, 138(5), 420-431. https://doi.org/10.1111/acps.12952

Østergaard, S. D., Foldager, L., Mors, O., Beck, P. & Correll, C. U. (2018). The validity and sensitivity of PANSS-6 in treatment-resistant schizophrenia. Schizophrenia Bulletin, 44(Suppl_1), S341-S342.

Ernst, E. H., Nielsen, J., Ipsen, M. B., Villesen, P. & Lykke-Hartmann, K. (2018). Transcriptome analysis of long non-coding RNAs and genes encoding paraspeckle proteins during human ovarian follicle development. Frontiers in Cell and Developmental Biology, 6(78), Article 78. https://doi.org/10.3389/fcell.2018.00078

Winge, S. B., Dalgaard, M. D., Belling, K. G., Jensen, J. M., Nielsen, J. E., Aksglaede, L., Schierup, M. H., Brunak, S., Skakkebæk, N. E., Juul, A., Rajpert-De Meyts, E. & Almstrup, K. (2018). Transcriptome analysis of the adult human Klinefelter testis and cellularity-matched controls reveals disturbed differentiation of Sertoli- and Leydig cells article. Cell Death and Disease, 9(6), Article 586. https://doi.org/10.1038/s41419-018-0671-1

Winge, S. B., Dalgaard, M. D., Jensen, J. M., Graem, N., Schierup, M. H., Juul, A., Rajpert-De Meyts, E. & Almstrup, K. (2018). Transcriptome profiling of fetal Klinefelter testis tissue reveals a possible involvement of long non-coding RNAs in gonocyte maturation. Human Molecular Genetics, 27(3), 430-439. https://doi.org/10.1093/hmg/ddx411

Bai, H., Guo, X., Narisu, N., Lan, T., Wu, Q., Xing, Y., Zhang, Y., Bond, S. R., Pei, Z., Zhang, Y., Zhang, D., Jirimutu, J., Zhang, D., Yang, X., Morigenbatu, M., Zhang, L., Ding, B., Guan, B., Cao, J. ... Yin, Y. (2018). Whole-genome sequencing of 175 Mongolians uncovers population-specific genetic architecture and gene flow throughout North and East Asia. Nature Genetics, 50(12), 1696–1704. https://doi.org/10.1038/s41588-018-0250-5

Murra, M., Lützen, L., Barut, A., Zbinden, R., Lund, M., Villesen, P. & Nørskov-Lauritsen, N. (2018). Whole-genome sequencing of aggregatibacter species isolated from human clinical specimens and description of Aggregatibacter kilianii sp. Nov. Journal of Clinical Microbiology, 56(7), Article UNSP e00053-18. https://doi.org/10.1128/JCM.00053-18

Leppälä, K., Nielsen, S. & Mailund, T. (2017). admixturegraph: an R package for admixture graph manipulation and fitting. Bioinformatics (Online), 33(11), 1738-1740. https://doi.org/10.1093/bioinformatics/btx048

Mailund, T. (2017). Advanced Object-Oriented Programming in R: Statistical Programming for Data Science, Analysis, and Finance . Apress.

Prüfer, K., de Filippo, C., Grote, S., Mafessoni, F., Korlević, P., Hajdinjak, M., Vernot, B., Skov, L., Hsieh, P., Peyrégne, S., Reher, D., Hopfe, C., Nagel, S., Maricic, T., Fu, Q., Theunert, C., Theunert, C., Rogers, R., Skoglund, P. ... Pääbo, S. (2017). A high-coverage Neandertal genome from Vindija Cave in Croatia. Science, 358(6363), 655-658. https://doi.org/10.1126/science.aao1887

Schrempf, D. & Hobolth, A. (2017). An alternative derivation of the stationary distribution of the multivariate neutral Wright–Fisher model for low mutation rates with a view to mutation rate estimation from site frequency data. Theoretical Population Biology, 114, 88-94. https://doi.org/10.1016/j.tpb.2016.12.001

Skov, L., Schierup, M. H. & Danish Pan Genome Consortium (2017). Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion. PLoS Genetics, 13(8), Article e1006834. https://doi.org/10.1371/journal.pgen.1006834

Palmgren, M., Engström, K., Hallström, B. M., Wahlberg, K., Søndergaard, D. A., Säll, T., Vahter, M. & Broberg, K. (2017). AS3MT-mediated tolerance to arsenic evolved by multiple independent horizontal gene transfers from bacteria to eukaryotes. PLoS One, 12(4), e0175422. Article e0175422. https://doi.org/10.1371/journal.pone.0175422

St Pourcain, B., Robinson, E. B., Anttila, V., Sullivan, B. B., Maller, J., Golding, J., Skuse, D., Ring, S., Evans, D. M., Zammit, S., Fisher, S. E., Neale, B. M., Anney, R. J. L., Ripke, S., Hollegaard, M. V., Werge, T., Ronald, A., Grove, J., Hougaard, D. M. ... iPSYCH-SSI-Broad Autism Group (2017). ASD and schizophrenia show distinct developmental profiles in common genetic overlap with population-based social communication difficulties. Molecular Psychiatry, 23, 263-270. https://doi.org/10.1038/mp.2016.198

Bertl, J., Guo, Q., Rasmussen, M. J., Besenbacher, S., Nielsen, M. M., Hornshøj, H., Pedersen, J. S. & Hobolth, A. (2017). A Site Specific Model And Analysis Of The Neutral Somatic Mutation Rate In Whole-Genome Cancer Data. https://doi.org/10.1101/122879

Jensen, J. M., Villesen, P., Friborg, R. M., Mailund, T., Besenbacher, S., Schierup, M. H. & Danish Pan-Genome Consortium (Jakob Grove, member of -) (2017). Assembly and analysis of 100 full MHC haplotypes from the Danish population. Genome Research, 27(9), 1597-1607. https://doi.org/10.1101/gr.218891.116

Álvarez-Álvarez, M. M., Zanetti, D., Carreras-Torres, R., Moral, P. & Athanasiadis, G. (2017). A survey of sub-Saharan gene flow into the Mediterranean at risk loci for coronary artery disease. European Journal of Human Genetics, 25(4), 472-476. https://doi.org/10.1038/ejhg.2016.200

Mailund, T. (2017). Beginning Data Science in R: Data Analysis, Visualization, and Modelling for the Data Scientist. Apress.

Duan, J. (2017). Biological insights from next-generation sequencing data analysis.

Okholm, T. L. H., Nielsen, M. M., Hamilton, M., Christensen, L.-L., Vang, S., Hedegaard, J., Hansen, T. B., Kjems, J., Dyrskjøt, L. & Pedersen, J. S. (2017). Circular RNA expression is abundant and correlated to aggressiveness in early-stage bladder cancer. npj Genomic Medicine, 2(1), Article 36. https://doi.org/10.1038/s41525-017-0038-z

Debost, J.-C., Debost, M., Grove, J., Mors, O., Hougaard, D. M., Børglum, A. D., Mortensen, P. B. & Petersen, L. (2017). COMT Val158Met and MTHFR C677T moderate risk of schizophrenia in response to childhood adversity. Acta Psychiatrica Scandinavica, 136(1), 85-95. https://doi.org/10.1111/acps.12761

Aschard, H., Guillemot, V., Vilhjalmsson, B., Patel, C. J., Skurnik, D., Ye, C. J., Wolpin, B., Kraft, P. & Zaitlen, N. (2017). Covariate selection for association screening in multiphenotype genetic studies. Nature Genetics, 49(12), 1789-1795. https://doi.org/10.1038/ng.3975

Foldager, L., Gildbjerg, L. B., Voss, H., Trénel, P., Munksgaard, L. & Thomsen, P. T. (2017). Daily eating activity of dairy cows from 3D accelerometer data and RFID signals: prediction by random forests and detection of sick cows. In P. Linde (Ed.), Symposium i Anvendt Statistik (pp. 109-122)

Jónsson, H., Sulem, P., Kehr, B., Kristmundsdottir, S., Zink, F., Hjartarson, E., Hardarson, M. T., Hjorleifsson, K. E., Eggertsson, H. P., Gudjonsson, S. A., Ward, L. D., Arnadottir, G. A., Helgason, E. A., Helgason, H., Gylfason, A., Jonasdottir, A., Jonasdottir, A., Rafnar, T., Besenbacher, S. ... Stefansson, K. (2017). Data Descriptor: Whole genome characterization of sequence diversity of 15,220 Icelanders. Scientific Data, 4, Article 170115. https://doi.org/10.1038/sdata.2017.115

Midzi, N., Mduluza, T., Mudenge, B., Foldager, L. & Leutscher, P. D. C. (2017). Decrease in Seminal HIV-1 RNA Load After Praziquantel Treatment of Urogenital Schistosomiasis Coinfection in HIV-Positive Men—An Observational Study. Open Forum Infectious Diseases, 4(4), Article ofx199. https://doi.org/10.1093/ofid/ofx199

Boel, M. & Foldager, L. (2017). Development of a predictive algorithm for a pig farming decision support system. In P. Linde (Ed.), Symposium i Anvendt Statistik (pp. 123-123)

Brodersen, D. E., Bendtsen, K. L., Xu, K., Luckmann, M., Winther, K., Shah, S. A. & Pedersen, C. N. S. (2017). Discrete Structural Dynamics of Pseudo-Palindromic Motifs Control DNA Binding of Bacterial Toxin-Antitoxin Complexes. F A S E B Journal, 31(No. 1 supplement), Article 777.2. http://www.fasebj.org/doi/abs/10.1096/fasebj.31.1_supplement.777.2

James, J., Esteve, D. C. & Eyre-Walker, A. (2017). DNA sequence diversity and the efficiency of natural selection in animal mitochondrial DNA. Heredity, 118(1), 88-95. https://doi.org/10.1038/hdy.2016.108

Ernst, E. H., Grøndahl, M. L., Grund, S., Hardy, K., Heuck, A., Sunde, L., Franks, S., Andersen, C. Y., Villesen, P. & Lykke-Hartmann, K. (2017). Dormancy and activation of human oocytes from primordial and primary follicles: molecular clues to oocyte regulation. Human Reproduction, 32(8), 1684-1700. https://doi.org/10.1093/humrep/dex238

Displaying results 501 to 550 out of 1384

Revised 13.01.2026

Palle Villesen