Publications

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Albiñana, C., Grove, J., McGrath, J. J., Agerbo, E., Wray, N. R., Bulik, C. M., Nordentoft, M., Hougaard, D. M., Werge, T., Børglum, A. D., Mortensen, P. B., Privé, F. & Vilhjálmsson, B. J. (2021). Leveraging both individual-level genetic data and GWAS summary statistics increases polygenic prediction. American Journal of Human Genetics, 108(6), 1001-1011. https://doi.org/10.1016/j.ajhg.2021.04.014

Nielsen, M. M. & Pedersen, J. S. (2021). miRNA activity inferred from single cell mRNA expression. Scientific Reports, 11(1), Article 9170. https://doi.org/10.1038/s41598-021-88480-5

Julienne, H., Laville, V., McCaw, Z. R., He, Z., Guillemot, V., Lasry, C., Ziyatdinov, A., Nerin, C., Vaysse, A., Lechat, P., Ménager, H., Le Goff, W., Dube, M.-P., Kraft, P., Ionita-Laza, I., Vilhjálmsson, B. J. & Aschard, H. (2021). Multitrait GWAS to connect disease variants and biological mechanisms. PLoS Genetics, 17(8), Article e1009713. https://doi.org/10.1371/journal.pgen.1009713

Dominguez-Valentin, M., Plazzer, J. P., Sampson, J. R., Engel, C., Aretz, S., Jenkins, M. A., Sunde, L., Bernstein, I., Capella, G., Balaguer, F., Macrae, F., Winship, I. M., Thomas, H., Evans, D. G., Burn, J., Greenblatt, M., de Vos tot Nederveen Cappel, W. H., Sijmons, R. H., Nielsen, M. ... Møller, P. (2021). No difference in penetrance between truncating and missense/aberrant splicing pathogenic variants in mlh1 and msh2: A prospective lynch syndrome database study. Journal of Clinical Medicine, 10(13), Article 2856. https://doi.org/10.3390/jcm10132856

Ehlers, B., Bataillon, T. & Damgaard, C. (2021). Ongoing decline in insect-pollinated plants across Danish grasslands. Biology Letters, 17(11), Article 20210493. https://doi.org/10.1098/rsbl.2021.0493

Krogh, U., Højberg, O., Foldager, L., Rani, S., Nørskov, N. P. & Sørensen, M. T. (2021). Performance and mineral status of weaning pigs fed diets with different levels of glyphosate and tryptophan. Livestock Science, 252, Article 104681. https://doi.org/10.1016/j.livsci.2021.104681

Riber, A. B., Herskin, M. S., Foldager, L., Sandercock, D. A., Murrell, J. & Tahamtani, F. (2021). Post-mortem examination of fast-growing broilers with different degrees of identifiable gait defects. Veterinary Record, 189(7), Article e454. https://doi.org/10.1002/vetr.454

Kjældgaard, A. L., Pilely, K., Olsen, K. S., Jessen, A. H., Lauritsen, A. Ø., Pedersen, S. W., Svenstrup, K., Karlsborg, M., Thagesen, H., Blaabjerg, M., Theódórsdóttir, Á., Elmo, E. G., Møller, A. T., Bonefeld, L., Berg, M., Garred, P. & Møller, K. (2021). Prediction of survival in amyotrophic lateral sclerosis: a nationwide, Danish cohort study. BMC Neurology, 21(1), Article 164. https://doi.org/10.1186/s12883-021-02187-8

Winters, J., Kobek-Kjeldager, C., Foldager, L. & Pedersen, L. J. (2021). Preliminary results on the effect of keeping pigs in home environment post weaning. In E. Strandberg, L. Pinotti, S. Messori, D. Kenny, M. Lee, J. F. Hocquette, V. A. P. Cadavez, S. Millet, R. Evans, T. Veldkamp, M. Pastell & G. Pollott (Eds.), Book of Abstracts of the 72nd Annual Meeting of the European Federation of Animal Science (pp. 356-356). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-918-3

Draghi, A., Chamberlain, C. A., Khan, S., Papp, K., Lauss, M., Soraggi, S., Radic, H. D., Presti, M., Harbst, K., Gokuldass, A., Kverneland, A., Nielsen, M., Westergaard, M. C. W., Andersen, M. H., Csabai, I., Jönsson, G., Szallasi, Z., Svane, I. M. & Donia, M. (2021). Rapid Identification of the Tumor-Specific Reactive TIL Repertoire via Combined Detection of CD137, TNF, and IFNγ, Following Recognition of Autologous Tumor-Antigens. Frontiers in Immunology, 12, Article 705422. https://doi.org/10.3389/fimmu.2021.705422

Cavassim, M. I. A., Andersen, S. U., Bataillon, T. & Schierup, M. H. (2021). Recombination facilitates adaptive evolution in rhizobial soil bacteria. Molecular Biology and Evolution, 38(12), 5480-5490. https://doi.org/10.1093/molbev/msab247

Norager, N. H., Olsen, M. H., Pedersen, S. H., Riedel, C. S., Czosnyka, M. & Juhler, M. (2021). Reference values for intracranial pressure and lumbar cerebrospinal fluid pressure: a systematic review. Fluids and Barriers of the CNS, 18(1), Article 19. https://doi.org/10.1186/s12987-021-00253-4

Wathes, D. C., Cheng, Z., Salavati, M., Buggiotti, L., Takeda, H., Tang, L., Becker, F., Ingvartsen, K. L., Ferris, C. P., Hostens, M., Crowe, M. A. & GplusE Consortium (2021). Relationships between metabolic profiles and gene expression in liver and leukocytes of dairy cows in early lactation. Journal of Dairy Science, 104(3), 3596-3616. https://doi.org/10.3168/jds.2020-19165

Agerbo, E., Trabjerg, B. B., Børglum, A. D., Schork, A. J., Vilhjálmsson, B. J., Pedersen, C. B., Hakulinen, C., Albiñana, C., Hougaard, D. M., Grove, J., McGrath, J. J., Bybjerg-Grauholm, J., Mors, O., Plana-Ripoll, O., Werge, T., Wray, N. R., Mortensen, P. B. & Musliner, K. L. (2021). Risk of Early-Onset Depression Associated With Polygenic Liability, Parental Psychiatric History, and Socioeconomic Status. JAMA Psychiatry, 78(4), 387-397. https://doi.org/10.1001/jamapsychiatry.2020.4172

Demontis, D., Walters, R. K., Rajagopal, V. M., Waldman, I. D., Grove, J., Als, T. D., Dalsgaard, S., Ribasas, M., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Werge, T., Nordentoft, M., Mors, O., Mortensen, P. B., ADHD Working Group of the Psychiatric Genomics Consortium (PGC), Cormand, B., Hougaard, D. M., Neale, B. M., Franke, B. ... Børglum, A. D. (2021). Risk variants and polygenic architecture of disruptive behavior disorders in the context of attention-deficit/hyperactivity disorder. Nature Communications, 12(1), Article 576. https://doi.org/10.1038/s41467-020-20443-2

Munn-Chernoff, M. A., Johnson, E. C., Chou, Y.-L., Coleman, J. R. I., Thornton, L. M., Walters, R. K., Yilmaz, Z., Baker, J. H., Hübel, C., Gordon, S., Medland, S. E., Watson, H. J., Gaspar, H. A., Bryois, J., Hinney, A., Leppä, V. M., Mattheisen, M., Ripke, S., Yao, S. ... Agrawal, A. (2021). Shared genetic risk between eating disorder- and substance-use-related phenotypes: Evidence from genome-wide association studies. Addiction Biology, 26(1), Article e12880. https://doi.org/10.1111/adb.12880

De, T., Goncalves, A., Speed, D., Froguel, P., NFBC consortium, Gaffney, D. J., Johnson, M. R., Jarvelin, M.-R. & Coin, L. J. (2021). Signatures of TSPAN8 variants associated with human metabolic regulation and diseases. iScience, 24(8), Article 102893. https://doi.org/10.1016/j.isci.2021.102893

Mørup, N., Stakaitis, R., Golubickaite, I., Riera, M., Dalgaard, M. D., Schierup, M. H., Jørgensen, N., Daugaard, G., Juul, A. & Almstrup, K. (2021). Small RNAs in Seminal Plasma as Novel Biomarkers for Germ Cell Tumors. Cancers, 13(10), Article 2346. https://doi.org/10.3390/cancers13102346

Maag, E., Kulasingam, A., Grove, E. L., Pedersen, K. S., Kristensen, S. D. & Hvas, A. M. (2021). Statistical and machine learning methods for analysis of multiplex protein data from a novel proximity extension assay in patients with ST-elevation myocardial infarction. Scientific Reports, 11(1), Article 13787. https://doi.org/10.1038/s41598-021-93162-3

Capion, N., Raundal, P., Foldager, L. & Thomsen, P. T. (2021). Status of claw recordings and claw health in Danish dairy cattle from 2013 to 2017. The Veterinary Journal, 277, Article 105749. https://doi.org/10.1016/j.tvjl.2021.105749

Bergeron, L. A., Besenbacher, S., Schierup, M. H. & Zhang, G. (2021). Studying mutation rate evolution in primates-a need for systematic comparison of computational pipelines. GigaScience, 10(10), Article giab072. https://doi.org/10.1093/gigascience/giab072

Mikic, N., Poulsen, F. R., Kristoffersen, K. B., Laursen, R. J., Guldberg, T. L., Skjøth-Rasmussen, J., Wong, E. T., Møller, S., Dahlrot, R. H., Sørensen, J. C. H. & Korshøj, A. R. (2021). Study protocol for OptimalTTF-2: enhancing Tumor Treating Fields with skull remodeling surgery for first recurrence glioblastoma: a phase 2, multi-center, randomized, prospective, interventional trial. BMC Cancer, 21(1), Article 1010. https://doi.org/10.1186/s12885-021-08709-4

Sall, K., Gessler, F., Foldager, L. & Simonic, M. (2021). Tannins to control Clostridium perfringens in vitro. Poster session presented at Annual Congress of The Danish Microbiological Society, Frederiksberg, Denmark.

Bulik, C. M., Thornton, L. M., Parker, R., Kennedy, H., Baker, J. H., MacDermod, C., Guintivano, J., Cleland, L., Miller, A. L., Harper, L., Larsen, J. T., Yilmaz, Z., Grove, J., Sullivan, P. F., Petersen, L. V., Jordan, J., Kennedy, M. A. & Martin, N. G. (2021). The Eating Disorders Genetics Initiative (EDGI): study protocol. BMC Psychiatry, 21(1), Article 234. https://doi.org/10.1186/s12888-021-03212-3

Bergeron, L. A., Besenbacher, S., Bakker, J., Zheng, J., Li, P., Pacheco, G., Sinding, M. H. S., Kamilari, M., Gilbert, M. T. P., Schierup, M. H. & Zhang, G. (2021). The germline mutational process in rhesus macaque and its implications for phylogenetic dating. GigaScience, 10(5), Article giab029. https://doi.org/10.1093/gigascience/giab029

Juul, R. I., Nielsen, M. M., Juul, M., Feuerbach, L. & Pedersen, J. S. (2021). The landscape and driver potential of site-specific hotspots across cancer genomes. npj Genomic Medicine, 6(1), Article 33. https://doi.org/10.1038/s41525-021-00197-6

Pathi, A., Wright, M., Smed, M. K., Nelson, J. L., Olsen, J., Hetland, M. L., Zoffmann, V. & Jawaheer, D. (2021). The rheumatoid arthritis gene expression signature among women who improve or worsen during pregnancy: A pilot study. Journal of Rheumatology, 48(7), 985-991. https://doi.org/10.3899/jrheum.201128

Miles, A. E., Dos Santos, F. C., Byrne, E. M., Renteria, M. E., McIntosh, A. M., Adams, M. J., Pistis, G., Castelao, E., Preisig, M., Baune, B. T., Schubert, K. O., Lewis, C. M., Jones, L. A., Jones, I., Uher, R., Smoller, J. W., Perlis, R. H., Levinson, D. F., Potash, J. B. ... Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium (2021). Transcriptome-based polygenic score links depression-related corticolimbic gene expression changes to sex-specific brain morphology and depression risk. Neuropsychopharmacology, 46(13), 2304-2311. https://doi.org/10.1038/s41386-021-01189-x

Breddam Mosegaard, S., Rytter, S., Madsen, F., Odgaard, A., Søballe, K. & Stilling, M. (2021). Two-year fixation and ten-year clinical outcomes of total knee arthroplasty inserted with normal-curing bone cement and slow-curing bone cement: a randomized controlled trial in 54 patients. Knee, 33, 110-124. https://doi.org/10.1016/j.knee.2021.08.027

Hartfield, M., Poulsen, N. A., Guldbrandtsen, B. & Bataillon, T. (2021). Using singleton densities to detect recent selection in Bos taurus. Evolution Letters, 5(6), 595-606. https://doi.org/10.1002/evl3.263

Tedde, A., Grelet, C., Ho, P. N., Pryce, J. E., Hailemariam, D., Wang, Z., Plastow, G., Gengler, N., Brostaux, Y., Froidmont, E., Dehareng, F., Bertozzi, C., Crowe, M. A., Dufrasne, I., GplusE Consortium & Soyeurt, H. (2021). Validation of dairy cow bodyweight prediction using traits easily recorded by dairy herd improvement organizations and its potential improvement using feature selection algorithms. Animals, 11(5), Article 1288. https://doi.org/10.3390/ani11051288

Atashi, H., Salavati, M., De Koster, J., Crowe, M., Opsomer, G., Hostens, M. & GplusE Consortium (2020). A Genome-Wide Association Study for Calving Interval in Holstein Dairy Cows Using Weighted Single-Step Genomic BLUP Approach. Animals, 10(3), 1-13. Article 500. https://doi.org/10.3390/ani10030500

Rheinbay, E., Nielsen, M. M., Abascal, F., Wala, J. A., Shapira, O., Tiao, G., Hornshøj, H., Hess, J. M., Juul, R. I., Lin, Z., Feuerbach, L., Sabarinathan, R., Madsen, T., Kim, J., Mularoni, L., Shuai, S., Lanzós, A., Herrmann, C., Maruvka, Y. E. ... PCAWG Consortium (2020). Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nature, 578(7793), 102-111. https://doi.org/10.1038/s41586-020-1965-x

Cheng, J. Y. & Mailund, T. (2020). Ancestral population genomics with Jocx, a coalescent hidden markov model. In J. Y. Dutheil (Ed.), Statistical population genomics (pp. 167-189). Humana Press. https://doi.org/10.1007/978-1-0716-0199-0_8

Hobolth, A., Guo, Q., Kousholt, A. & Jensen, J. L. (2020). A Unifying Framework and Comparison of Algorithms for Non-negative Matrix Factorisation. International Statistical Review, 88(1), 29-53. https://doi.org/10.1111/insr.12331

Krogh, M. A., Hostens, M., Salavati, M., Grelet, C., Sørensen, M. T., Wathers, D. C., Ferris, C. P., Marchitelli, C., Signorelli, F., Napolitano, F., Becker, F., Larsen, T., Matthews, E., Carter, F., Vanlierde, A., Opsomer, G., Gengler, N., Dehareng, F., Crowe, M. A. ... Foldager, L. (2020). Between- and within-herd variation in blood and milk biomarkers in Holstein cows in early lactation. Animal, 14(5), 1067-1075. Article 1751731119002659. https://doi.org/10.1017/S1751731119002659

Birkbak, N. J. & McGranahan, N. (2020). Cancer Genome Evolutionary Trajectories in Metastasis. Cancer Cell, 37(1), 8-19. https://doi.org/10.1016/j.ccell.2019.12.004

Carlevaro-Fita, J., Lanzós, A., Feuerbach, L., Hong, C., Mas-Ponte, D., Pedersen, J. S., PCAWG Drivers and Functional Interpretation Group, Johnson, R. & PCAWG Consortium (2020). Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis. Communications Biology, 3(1), Article 56. https://doi.org/10.1038/s42003-019-0741-7

Schild, S. L. A., Foldager, L., Rangstrup-Christensen, L. & Pedersen, L. J. (2020). Characteristics of Piglets Born by Two Highly Prolific Sow Hybrids. Frontiers in Veterinary Science, 7, Article 355. https://doi.org/10.3389/fvets.2020.00355

Hollensen, A. K., Thomsen, H. S., Lloret-Llinares, M., Kamstrup, A. B., Jensen, J. M., Luckmann, M., Birkmose, N., Palmfeldt, J., Jensen, T. H., Hansen, T. B. & Damgaard, C. K. (2020). circZNF827 nucleates a transcription inhibitory complex to balance neuronal differentiation. eLife, 9, 1-29. Article e58478. https://doi.org/10.7554/eLife.58478

Schouby Bock, M., Nørgaard Van Achter, O., Dines, D., Simonsen Speed, M., Correll, C. U., Mors, O., Østergaard, S. D. & Kølbæk, P. (2020). Clinical validation of the self-reported Glasgow Antipsychotic Side-effect Scale using the clinician-rated UKU side-effect scale as gold standard reference. Journal of Psychopharmacology, 34(8), 820-828. https://doi.org/10.1177/0269881120916122

Shuai, S., PCAWG Drivers and Functional Interpretation Working Group, Gallinger, S., Stein, L. & PCAWG Consortium (2020). Combined burden and functional impact tests for cancer driver discovery using DriverPower. Nature Communications, 11(1), Article 734. https://doi.org/10.1038/s41467-019-13929-1

Kongsted, H., Foldager, L. & Sørensen, J. T. (2020). Data from routine meat inspection is a poor indicator of the prevalence of tail lesions in undocked pigs. Porcine Health Management, 6(1), Article 10. https://doi.org/10.1186/s40813-020-00149-z

Duan, H., Mansour, S., Reed, R., Gillis, M. K., Parent, B., Liu, B., Sztupinszki, Z., Birkbak, N., Szallasi, Z., Elia, A. E. H., Garber, J. E. & Pathania, S. (2020). E3 ligase RFWD3 is a novel modulator of stalled fork stability in BRCA2-deficient cells. The Journal of Cell Biology, 219(6), Article e201908192. https://doi.org/10.1083/jcb.201908192

Ettema, J., Krogh, M. A., Østergaard, S. & GplusE Consortium (2020). Economic value of information from an alert system on physiological imbalance in fresh cows. Preventive Veterinary Medicine, 181, Article 105039. https://doi.org/10.1016/j.prevetmed.2020.105039

Østergaard, S. D., Speed, M. S., Kellner, C. H., Mueller, M., McClintock, S. M., Husain, M. M., Petrides, G., McCall, W. V., Lisanby, S. H. & for the CORE/PRIDE workgroup (2020). Electroconvulsive therapy (ECT) for moderate-severity major depression among the elderly: Data from the pride study. Journal of Affective Disorders, 274, 1134-1141. https://doi.org/10.1016/j.jad.2020.05.039

Nielsen, M. M., Trolle, C., Vang, S., Hornshøj, H., Skakkebaek, A., Hedegaard, J., Nordentoft, I., Pedersen, J. S. & Gravholt, C. H. (2020). Epigenetic and transcriptomic consequences of excess X-chromosome material in 47,XXX syndrome-A comparison with Turner syndrome and 46,XX females. American Journal of Medical Genetics. Part C: Seminars in Medical Genetics, 184(2), 279-293. https://doi.org/10.1002/ajmg.c.31799

Athanasiadis, G., Speed, D., Andersen, M. K., Appel, E. V. R., Grarup, N., Brandslund, I., Jørgensen, M. E., Larsen, C. V. L., Bjerregaard, P., Hansen, T. & Albrechtsen, A. (2020). Estimating narrow-sense heritability using family data from admixed populations. Heredity, 124(6), 751-762. https://doi.org/10.1038/s41437-020-0311-2

Speed, D., Holmes, J. & Balding, D. J. (2020). Evaluating and improving heritability models using summary statistics. Nature Genetics, 52(4), 458-462. https://doi.org/10.1038/s41588-020-0600-y

Waldvogel, A. M., Feldmeyer, B., Rolshausen, G., Exposito-Alonso, M., Rellstab, C., Kofler, R., Mock, T., Schmid, K., Schmitt, I., Bataillon, T., Savolainen, O., Bergland, A., Flatt, T., Guillaume, F. & Pfenninger, M. (2020). Evolutionary genomics can improve prediction of species’ responses to climate change. Evolution Letters, 4(1), 4-18. https://doi.org/10.1002/evl3.154

Displaying results 301 to 350 out of 1378

Revised 13.01.2026

Palle Villesen