2010

• Lamy, P., Wiuf, C., Ørntoft, T. F., Andersen, C. L., 5.12.2010, "Rseg - an R package to optimize segmentation of SNP array data", Bioinformatics. Journal article
• Kristensen, T. G., 2010, "Transforming Tanimoto queries on real valued vectors to range queries in Euclidian space", Journal of Mathematical Chemistry, vol. 48, nr. 2, s. 287-289. Journal article
• Kristensen, T. G., Nielsen, J., Pedersen, C. N. S., 2010, "A tree-based method for the rapid screening of chemical fingerprints", Algorithms for Molecular Biology, vol. 5, nr. 9. Journal article
• Knudsen, M., Wiuf, C. H., 2010, "The CATH Database", Human Genomics (Online). Journal article
• Knudsen, M., 2010, "Mathematical Models of Protein Interaction Networks and Protein Domain Structures". Ph.d. thesis
• Kesmodel, U. S., Underbjerg, M., Kilburn, T. R., Bakketeig, L. S., Mortensen, E. L., Landrø, N. I., Schendel, D., Bertrand, J., Grove, J., Ebrahim, S., Thorsen, P., 2010, "Lifestyle during pregnancy: neurodevelopmental effects at 5 years og age", Scandinavian Journal of Public Health, vol. 38, nr. 2, s. 208-219. Journal article
• Justesen, P., 2010, "Distinct Candidates Optimization". Ph.d. thesis
• Hvidtjørn, D., Grove, J., Schendel, D., Schieve, L., Sværke, C., Jacobsson, B., Uldall, P. V., Ernst, E., Thorsen, P., 8.2010, "Multiplicity and early gestational age contribute to an increased risk of cerebral palsy from assisted conception: a population-based cohort study", Human Reproduction, vol. 25, nr. 8, s. 2115-23. Journal article
• Gregersen, N., Buttenschøn, H. N., Atli Dahl, H., Foldager, L., Kristensen, A. S., Woldby, D., Koefoed, P., Wang, A., Joensen, S., Kruse, T., Børglum, A., Mors, O., 2010, "Markers on chromosome 19p13 associated with panic disorder", XVIIIth World Congress on Psychiatric Genetics. Book of abstracts., s. 288-289. Conference abstract in journal
• Castric, V., Bechsgaard, J. S., Grenier, S., Noureddine, R., Schierup, M. H., Vekemans, X., 2010, "Molecular evolution within and between self-incompatibility specificities", Molecular Biology and Evolution, vol. 27, nr. 1, s. 11-20. Journal article
• Branscheid, A., Sieh, D., Pant, B. D., May, P., Devers, E. A., Elkrog, A., Schauser, L., Scheible, W., Krajinski, F., 2010, "Expression pattern suggests a role of MiR399 in the regulation of the cellular response to local Pi increase during arbuscular mycorrhizal symbiosis", Molecular Plant - Microbe Interactions, vol. 23, nr. 7, s. 915-26. Journal article
• Andersen, C. L., Lamy, P., Thorsen, K., Kjeldsen, E., Wikman, F., Villesen, P., Øster, B., Laurberg, S., Ørntoft, T. F., 10.12.2010, "Frequent genomic loss at chr16p13.2 is associated with poor prognosis in colorectal cancer", International Journal of Cancer. Journal article

2009

• Zieger, K., Wiuf, C. H., Jensen, K. M., Ørntoft, T. F., Andersen, L. D., 2009, "Chromosomal imbalance in the progression of high-risk non-muscle invasive bladder cancer.", B M C Cancer, vol. 9, s. 149. Journal article
• Zieger, K., Wiuf, C., Jensen, K. M., Ørntoft, T. F., Andersen, L. D., 1.1.2009, "Chromosomal imbalance in the progression of high-risk non-muscle invasive bladder cancer", B M C Cancer, vol. 9, s. 149. Journal article
• Wiuf, C. H., Andersen, C. L., 2009, "Statistics and Informatics in Molecular Cancer Research". Book
• Wiuf, C. H., Andersen, C. L., 2009, "Statistics and Informatics in Molecular Cancer Research". Anthology
• Wang, K., Li, J., Li, S., Bolund, L., Wiuf, C., 2009, "Estimation of tumor heterogeneity using CGH array data", B M C Bioinformatics, vol. 10, nr. 1, s. 12. Journal article
• Staunstrup, N. H., Moldt, B., Mátés, L., Villesen, P., Jakobsen, M., Ivics, Z., Izsvák, Z., Mikkelsen, J. G., 1.7.2009, "Hybrid Lentivirus-transposon Vectors With a Random Integration Profile in Human Cells", Molecular Therapy, vol. 17, nr. 7, s. 1205-14. Journal article
• Schoustra, S. E., Bataillon, T., Gifford, D. R., Kassen, R., 2009, "The properties of adaptive walks in evolving populations of fungus", P L o S Biology, vol. 7, nr. 11, s. e1000250. Journal article
• Schierup, M. H., Mailund, T., Li, H., Wang, J., Tjønneland, A., Vogel, U., Bolund, L., Nexø, B. A., 2009, "Haplotype frequencies in a sub-region of chromosome 19q13.3, related to risk and prognosis of cancer, differ dramatically between ethnic groups", B M C Medical Genetics, vol. 10, s. 20. Journal article
• Ratmann, O., Wiuf, C. H., Pinney, J. W., 2009, "From evidence to inference", H F S P Journal, vol. 3, nr. 5, s. 290-306. Journal article
• Ratmann, O., Andrieu, C., Wiuf, C. H., Richardson, S., 2009, "Model criticism based on likelihood-free inference", National Academy of Sciences. Proceedings, vol. 106, s. 10576-10581. Journal article
• Preker, P., Nielsen, J., Schierup, M. H., Jensen, T. H., 2009, "RNA polymerase plays both sides: Vivid and bidirectional transcription around and upstream of active promoters", Cell Cycle, vol. 8, nr. 8, s. 1106-1107. Review
• Pradal, C., Olesen, J. M., Wiuf, C. H., 2009, "Temporal development and collapse of an Arctic plant-pollinator network", B M C Ecology, vol. 9. Journal article
• Nielsen, J., Foldager, L., Meyer, J. M., 2009, "Increased use of antibiotics in patients treated with clozapine", European Neuropsychopharmacology, vol. 19, nr. 7, s. 483-486. Journal article
• Liljas, A., Liljas, L., Piskur, J., Lindblom, G., Nissen, P., Kjeldgaard, M., 2009, "Textbook on Structural Biology". Book
• Li, J., Wang, K., Li, S., Timmermans-Wielenga, V., Rank, F., Wiuf, C., Zhang, X., Yang, H., Bolund, L., 2009, "DNA copy number aberrations in breast cancer by array comparative genomic hybridization", Genomics Proteomics & Bioinformatics, vol. 7, nr. 1-2, s. 13-24. Journal article
• Li, J., Gao, F., Li, N., Li, S., Yin, G., Tian, G., Jia, S., Wang, K., Zhang, X., Yang, H., Nielsen, A. L., Bolund, L., 2009, "An improved method for genome wide DNA methylation profiling correlated to transcription and genomic instability in two breast cancer cell lines", B M C Genomics, vol. 10, s. 223. Journal article
• Kristensen, T. G., Nielsen, J., Pedersen, C. N. S., 2009, "A tree based method for the rapid screening of chemical fingerprints", Lecture Notes in Computer Science, vol. 5724, s. 194-205. Conference article
• Kristensen, L. S., Wojdacz, T. K., Thestrup, B. B., Wiuf, C. H., Hager, H., Hansen, L. L., 2009, "Quality assessment of DNA derived from up to 30 years old formalin fixed paraffin embedded (FFPE) tissue for PCR-based methylation analysis using SMART-MSP and MS-HRM", B M C Cancer, vol. 9, nr. 453, s. 453. Journal article
• Jørgensen, F. G., Schierup, M. H., 2009, "Increased rate of human mutations where DNA and RNA polymerases collide", Trends in Genetics, vol. 25, nr. 12, s. 523-527. Journal article
• Høgslund, N., Radutoiu, S., Krusell, L., Voroshilova, V., Hannah, M. A., Goffard, N., Sanchez, D. H., Lippold, F., Ott, T., Sato, S., Tabata, S., Liboriussen, P., Lohmann, G. V., Schauser, L., Weiller, G. F., Udvardi, M. K., Stougaard, J., 7.8.2009, "Dissection of symbiosis and organ development by integrated transcriptome analysis of lotus japonicus mutant and wild-type plants", P L o S One, vol. 4, nr. 8, s. e6556. Journal article
• Hollegaard, M., Grauholm, J., Børglum, A., Nyegaard, M., Nørgaard-Pedersen, B., Ørntoft, T., Mortensen, P. B., Wiuf, C., Mors, O., Didriksen, M., Thorsen, P., Hougaard, D. M., 2009, "Genome-wide scans using archived neonatal dried blood spot samples", B M C Genomics, vol. 10, s. 297. Journal article
• Hobolth, A., Wiuf, C. H., 2009, "The genealogy, site frequency spectrum and ages of two nested mutant alleles", Theoretical Population Biology, vol. 75, nr. 4, s. 260-265. Journal article
• Hobolth, A., Stone, E., 2009, "Simulation from endpoint-conditioned, continuous-time Markov chains on a finite state space, with applications to molecular evolution", Annals of Applied Statistics, vol. 3, nr. 3, s. 1204-1231. Journal article
• Guo, Y., Bechsgaard, J. S., Slotte, T., Neuffer, B., Lascoux, M., Weigel, D., Schierup, M. H., 2009, "Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck", National Academy of Sciences. Proceedings, vol. 106, nr. 13, s. 5246-51. Journal article
• Glémin, S., Bataillon, T., 2009, "A comparative view of the evolution of grasses under domestication", New Phytologist, vol. 183, nr. 2, s. 273-90. Journal article
• Emily, M., Mailund, T., Hein, J., Schauser, L., Schierup, M. H., 2009, "Using biological networks to search for interacting loci in genomewide association studies", European Journal of Human Genetics. Journal article
• Dutheil, J., Ganapathy, G., Hobolth, A., Mailund, T., Uyenoyama, M., Schierup, M. H., 2009, "Ancestral population genomics", Genetics, vol. 183, nr. 1, s. 259–274. Journal article
• Dittmer, J., Thøgersen, L., Underhaug, J., Bertelsen, K., Vosegaard, T., Pedersen, J. M., Schiøtt, H. B., Tajkhorshid, E., Skrydstrup, T., Nielsen, N. C., 2009, "Incorporation of Antimicrobial Peptides into Membranes", Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, vol. 113, nr. 19, s. 6928-6937. Journal article
• Christiansen, F., Fenchel, T., 2009, "Evolution - Den forudsigelige vilkårlighed". Book
• Boggs, N. A., Dwyer, K. G., Shah, P., McCulloch, A. A., Bechsgaard, J., Schierup, M. H., Nasrallah, M. E., Nasrallah, J. B., 2009, "Expression of distinct self-incompatibility specificities in Arabidopsis thaliana", Genetics, vol. 182, nr. 4, s. 1313-21. Journal article
• Besenbacher, S., Mailund, T., Pedersen, C. S., 2009, "A fast algorithm for genome wide haplotype pattern mining", B M C Bioinformatics, nr. suppl. 1, s. 772. Conference article
• Besenbacher, S., Mailund, T., Pedersen, C. S., 2009, "A fast algorithm for genome wide haplotype pattern mining", B M C Bioinformatics, vol. 10, nr. S1. Journal article
• Besenbacher, S., Mailund, T., Schierup, M. H., 2009, "Local phylogeny mapping of quantitative traits: Higher accuracy and better ranking than single marker association in genomewide scans", Genetics, vol. 181, s. 747-753. Journal article
• Bertioli, D., Moretzsohn, M., Madsen, L., Sandal, N., Leal-Bertioli, S., Guimaraes, P., Hougaard, B., Fredslund, J., Schauser, L., Nielsen, A., Sato, S., Tabata, S., Cannon, S., Stougaard, J., 2009, "An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes", B M C Genomics, vol. 10, nr. 1, s. 45. Journal article
• Bertelsen, K., Jensen, B. P., Thøgersen, L., Tajkhorshid, E., Schiøtt, H. B., Skrydstrup, T., Nielsen, N. C., Vosegaard, T., 2009, "Residue-Specific Information about the Dynamics of Antimicrobial Peptides from ¹H−¹⁵N and ²H Solid-State NMR Spectroscopy", American Chemical Society. Journal, vol. 131, nr. 51, s. 18335–18342. Journal article
• Andersen, L. N., Mandjes, M., 2009, "Structural properties of reflected Lévy processes", Queueing Systems, vol. 63, nr. 1-4, s. 301-322. Journal article

2008

• de Groot, S., Mailund, T., Lunter, G., Hein, J., 2008, "Investigating Selection on Viruses: A Statistical Alignment Approach", B M C Bioinformatics, vol. 9, nr. 308. Journal article
• d'Amore, F., Chan, E., Iqbal, J., Geng, H., Young, K., Xiao, L., Hess, M. M., Sanger, W. G., Smith, L., Wiuf, C., Hagberg, O., Fu, K., Chan, W. C., Dave, B. J., 2008, "Clonal evolution in t(14;18)-positive follicular lymphoma, evidence for multiple common pathways, and frequent parallel clonal evolution", Clinical Cancer Research, vol. 14, nr. 22, s. 7180-7. Journal article